Wall clock time and date at job start Tue Mar 31 2020 03:58:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.47013 * 110.99969 * 2 1 4 4 C 1.53096 * 109.25876 * 182.39381 * 3 2 1 5 5 O 1.43021 * 109.25715 * 303.14957 * 4 3 2 6 6 C 1.43011 * 113.73876 * 58.66875 * 5 4 3 7 7 H 1.09005 * 109.50662 * 61.30505 * 6 5 4 8 8 C 1.50699 * 109.50707 * 181.39615 * 6 5 4 9 9 O 1.21273 * 120.00253 * 5.00156 * 8 6 5 10 10 N 1.34777 * 119.99831 * 185.00149 * 8 6 5 11 11 C 1.46503 * 120.00065 * 180.02562 * 10 8 6 12 12 C 1.53000 * 109.47131 * 180.02562 * 11 10 8 13 13 H 1.08993 * 112.90994 * 43.74713 * 12 11 10 14 14 C 1.53783 * 113.61272 * 174.99978 * 12 11 10 15 15 C 1.53775 * 87.08490 * 139.97643 * 14 12 11 16 16 H 1.08992 * 113.61649 * 219.93466 * 15 14 12 17 17 N 1.46502 * 113.61436 * 89.11310 * 15 14 12 18 18 C 1.36930 * 120.00159 * 155.00234 * 17 15 14 19 19 H 1.08000 * 119.99841 * 0.02562 * 18 17 15 20 20 C 1.38810 * 120.00182 * 179.97438 * 18 17 15 21 21 N 1.31622 * 119.99887 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 120.00212 * 179.97438 * 20 18 17 23 23 H 1.48506 * 109.47297 * 89.99941 * 22 20 18 24 24 H 1.48503 * 109.47261 * 330.00122 * 22 20 18 25 25 H 1.48500 * 109.47454 * 210.00115 * 22 20 18 26 26 C 1.53785 * 113.60939 * 272.49102 * 12 11 10 27 27 C 1.47015 * 110.99748 * 123.63030 * 2 1 3 28 28 H 1.09003 * 109.47320 * 63.95160 * 1 2 3 29 29 H 1.08999 * 109.47082 * 183.95716 * 1 2 3 30 30 H 1.09004 * 109.47101 * 303.95930 * 1 2 3 31 31 H 1.09003 * 109.50990 * 62.45602 * 3 2 1 32 32 H 1.09004 * 109.50661 * 302.32829 * 3 2 1 33 33 H 1.08998 * 109.50719 * 183.21405 * 4 3 2 34 34 H 1.08995 * 109.54615 * 63.10363 * 4 3 2 35 35 H 0.96999 * 120.00156 * 359.97438 * 10 8 6 36 36 H 1.09003 * 109.47210 * 59.99254 * 11 10 8 37 37 H 1.09007 * 109.46633 * 299.99561 * 11 10 8 38 38 H 1.09006 * 113.61547 * 25.42252 * 14 12 11 39 39 H 1.09005 * 113.61078 * 254.52672 * 14 12 11 40 40 H 0.97008 * 119.99482 * 335.00289 * 17 15 14 41 41 H 0.96993 * 120.00105 * 359.97438 * 21 20 18 42 42 H 1.08997 * 113.61314 * 105.47764 * 26 12 11 43 43 H 1.08997 * 113.61718 * 334.57056 * 26 12 11 44 44 H 1.08997 * 109.50447 * 57.67759 * 27 2 1 45 45 H 1.08991 * 109.50826 * 297.54450 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9959 1.3725 0.0000 4 6 3.5249 1.3264 -0.0604 5 8 4.0175 0.5574 1.0403 6 6 3.5250 -0.7849 1.0710 7 1 3.8391 -1.3086 0.1681 8 6 4.0742 -1.4948 2.2815 9 8 4.7402 -0.8858 3.0915 10 7 3.8251 -2.8068 2.4639 11 6 4.3584 -3.4969 3.6410 12 6 3.9336 -4.9663 3.6067 13 1 4.0404 -5.4160 2.6197 14 6 4.5443 -5.8107 4.7377 15 6 3.1781 -6.5076 4.8488 16 1 2.8715 -6.7064 5.8757 17 7 3.0440 -7.6784 3.9784 18 6 2.1611 -8.6740 4.3011 19 1 1.5632 -8.5960 5.1971 20 6 2.0336 -9.7830 3.4761 21 7 2.7619 -9.8779 2.3838 22 14 0.8297 -11.1416 3.9167 23 1 -0.4930 -10.8473 3.3089 24 1 0.6896 -11.2193 5.3931 25 1 1.3350 -12.4382 3.3986 26 6 2.5649 -5.2271 4.2577 27 6 1.9958 -0.7602 1.1428 28 1 -0.3634 0.4513 -0.9233 29 1 -0.3633 -1.0252 0.0709 30 1 -0.3633 0.5741 0.8524 31 1 1.6828 1.8826 0.9110 32 1 1.6133 1.9092 -0.8682 33 1 3.9222 2.3398 -0.0030 34 1 3.8392 0.8648 -0.9964 35 1 3.2920 -3.2939 1.8163 36 1 3.9703 -3.0269 4.5447 37 1 5.4467 -3.4335 3.6372 38 1 4.8114 -5.2300 5.6207 39 1 5.3456 -6.4709 4.4057 40 1 3.5808 -7.7482 3.1734 41 1 3.3873 -9.1726 2.1552 42 1 1.7682 -5.4163 3.5383 43 1 2.2908 -4.4870 5.0095 44 1 1.6134 -1.7802 1.1087 45 1 1.6827 -0.2842 2.0720 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086331732.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:58:56 Heat of formation + Delta-G solvation = -39.376976 kcal Electronic energy + Delta-G solvation = -24194.777114 eV Core-core repulsion = 20634.438860 eV Total energy + Delta-G solvation = -3560.338253 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.59653 -39.24870 -38.39354 -36.07839 -34.78186 -33.57938 -31.97720 -30.03076 -29.20412 -27.34900 -25.22747 -25.07802 -24.51926 -23.48281 -21.93078 -21.20253 -20.51455 -18.67287 -17.79420 -17.28624 -16.99358 -16.39900 -15.92537 -15.61406 -15.34095 -15.12163 -15.03270 -14.77684 -14.21666 -14.06101 -13.67761 -13.59512 -13.38517 -13.16175 -12.76697 -12.43356 -12.22253 -12.13363 -12.06253 -11.82518 -11.51838 -11.16988 -10.96977 -10.77548 -10.39357 -10.16866 -10.08822 -10.02827 -9.83322 -9.66166 -9.21299 -9.09214 -8.92245 -8.90635 -7.11011 -6.16794 -3.17393 2.43304 2.65775 3.32882 3.48547 3.53005 3.67266 3.75956 4.35241 4.47182 4.49308 4.60937 4.63812 4.75966 4.87294 4.93382 4.97481 5.04670 5.07252 5.11672 5.14382 5.29824 5.33825 5.43236 5.46739 5.49190 5.49850 5.55300 5.77246 5.85591 5.94476 6.10526 6.24104 6.28748 6.38872 6.42995 6.47301 6.61154 6.68133 6.76003 6.90749 7.38729 7.77719 8.09361 8.68856 9.15724 10.01864 10.16252 11.31262 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.019825 B = 0.002812 C = 0.002568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1412.034585 B = 9953.955414 C =10898.931391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.540 5.540 3 C 0.014 3.986 4 C 0.062 3.938 5 O -0.356 6.356 6 C 0.078 3.922 7 H 0.094 0.906 8 C 0.519 3.481 9 O -0.522 6.522 10 N -0.721 5.721 11 C 0.133 3.867 12 C -0.120 4.120 13 H 0.091 0.909 14 C -0.148 4.148 15 C 0.172 3.828 16 H 0.064 0.936 17 N -0.717 5.717 18 C -0.334 4.334 19 H 0.067 0.933 20 C -0.044 4.044 21 N -0.943 5.943 22 Si 1.083 2.917 23 H -0.295 1.295 24 H -0.294 1.294 25 H -0.287 1.287 26 C -0.168 4.168 27 C 0.028 3.972 28 H 0.073 0.927 29 H 0.074 0.926 30 H 0.029 0.971 31 H 0.046 0.954 32 H 0.089 0.911 33 H 0.104 0.896 34 H 0.063 0.937 35 H 0.403 0.597 36 H 0.068 0.932 37 H 0.066 0.934 38 H 0.079 0.921 39 H 0.067 0.933 40 H 0.368 0.632 41 H 0.255 0.745 42 H 0.066 0.934 43 H 0.069 0.931 44 H 0.095 0.905 45 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.643 21.777 -5.100 22.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.265 5.265 3 C -0.115 4.115 4 C -0.015 4.015 5 O -0.274 6.274 6 C 0.016 3.984 7 H 0.111 0.889 8 C 0.302 3.698 9 O -0.397 6.397 10 N -0.374 5.374 11 C 0.010 3.990 12 C -0.139 4.139 13 H 0.110 0.890 14 C -0.188 4.188 15 C 0.060 3.940 16 H 0.082 0.918 17 N -0.357 5.357 18 C -0.465 4.465 19 H 0.085 0.915 20 C -0.242 4.242 21 N -0.588 5.588 22 Si 0.914 3.086 23 H -0.223 1.223 24 H -0.221 1.221 25 H -0.213 1.213 26 C -0.209 4.209 27 C -0.101 4.101 28 H 0.092 0.908 29 H 0.093 0.907 30 H 0.048 0.952 31 H 0.064 0.936 32 H 0.108 0.892 33 H 0.122 0.878 34 H 0.081 0.919 35 H 0.237 0.763 36 H 0.086 0.914 37 H 0.084 0.916 38 H 0.098 0.902 39 H 0.086 0.914 40 H 0.201 0.799 41 H 0.066 0.934 42 H 0.084 0.916 43 H 0.088 0.912 44 H 0.113 0.887 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -1.618 20.548 -5.066 21.224 hybrid contribution -0.044 1.680 0.355 1.718 sum -1.662 22.228 -4.710 22.782 Atomic orbital electron populations 1.22415 0.86157 1.02659 1.01217 1.62219 1.08787 1.13650 1.41837 1.22869 0.96650 0.89851 1.02090 1.22759 0.92135 0.96662 0.89957 1.88126 1.69246 1.21708 1.48310 1.21949 0.93059 0.85714 0.97683 0.88850 1.20021 0.80839 0.82242 0.86670 1.90722 1.38289 1.65932 1.44738 1.45980 1.55117 1.09243 1.27034 1.21499 0.98610 0.91696 0.87212 1.22716 0.98853 0.92484 0.99804 0.89030 1.23463 0.99469 0.98451 0.97427 1.20981 0.92366 0.86216 0.94413 0.91828 1.42181 1.48092 1.19196 1.26247 1.20114 1.17418 1.00056 1.08895 0.91544 1.25806 1.03044 0.99857 0.95476 1.70862 1.26516 1.35889 1.25526 0.83188 0.74953 0.75909 0.74561 1.22277 1.22088 1.21345 1.23888 0.95788 1.00870 1.00361 1.22699 0.93926 1.00430 0.93006 0.90827 0.90732 0.95239 0.93604 0.89230 0.87775 0.91886 0.76283 0.91398 0.91608 0.90240 0.91423 0.79864 0.93382 0.91552 0.91234 0.88696 0.93116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 9.63 60.07 0.58 0.74 16 2 N -0.54 -4.65 4.99 -242.59 -1.21 -5.86 16 3 C 0.01 0.10 5.66 -3.71 -0.02 0.08 16 4 C 0.06 0.52 7.01 37.21 0.26 0.78 16 5 O -0.36 -4.43 10.01 -55.06 -0.55 -4.98 16 6 C 0.08 0.86 3.22 -27.83 -0.09 0.77 16 7 H 0.09 0.90 8.14 -51.93 -0.42 0.47 16 8 C 0.52 7.02 7.18 -10.99 -0.08 6.94 16 9 O -0.52 -9.29 16.51 -14.27 -0.24 -9.52 16 10 N -0.72 -8.53 5.52 -60.29 -0.33 -8.86 16 11 C 0.13 1.73 5.51 -4.04 -0.02 1.71 16 12 C -0.12 -1.72 3.63 -89.80 -0.33 -2.04 16 13 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 14 C -0.15 -2.32 7.39 -25.92 -0.19 -2.51 16 15 C 0.17 3.32 4.56 -67.12 -0.31 3.01 16 16 H 0.06 1.26 8.10 -51.93 -0.42 0.84 16 17 N -0.72 -17.37 5.31 -52.64 -0.28 -17.65 16 18 C -0.33 -9.19 9.97 -15.06 -0.15 -9.34 16 19 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 20 C -0.04 -1.26 5.50 -17.43 -0.10 -1.36 16 21 N -0.94 -28.57 13.70 55.49 0.76 -27.81 16 22 Si 1.08 25.50 29.92 -169.99 -5.09 20.42 16 23 H -0.30 -6.74 7.11 56.52 0.40 -6.34 16 24 H -0.29 -6.55 7.11 56.52 0.40 -6.14 16 25 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 26 C -0.17 -2.71 7.43 -25.91 -0.19 -2.90 16 27 C 0.03 0.27 4.89 -3.71 -0.02 0.25 16 28 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.07 0.50 8.08 -51.93 -0.42 0.08 16 30 H 0.03 0.20 8.14 -51.93 -0.42 -0.22 16 31 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.40 3.98 8.35 -40.82 -0.34 3.63 16 36 H 0.07 0.92 7.85 -51.93 -0.41 0.52 16 37 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.08 1.09 8.10 -51.93 -0.42 0.67 16 39 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 40 H 0.37 9.13 6.73 -40.82 -0.27 8.86 16 41 H 0.25 7.57 6.77 -40.82 -0.28 7.30 16 42 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 43 H 0.07 1.01 7.90 -51.93 -0.41 0.60 16 44 H 0.09 0.79 7.99 -51.93 -0.41 0.38 16 45 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 364.25 15.07 5.49 5.49 Total: -1.00 -33.95 364.25 -9.76 -43.71 By element: Atomic # 1 Polarization: 16.60 SS G_CDS: -7.66 Total: 8.93 kcal Atomic # 6 Polarization: -3.22 SS G_CDS: -0.65 Total: -3.87 kcal Atomic # 7 Polarization: -59.12 SS G_CDS: -1.06 Total: -60.18 kcal Atomic # 8 Polarization: -13.72 SS G_CDS: -0.79 Total: -14.50 kcal Atomic # 14 Polarization: 25.50 SS G_CDS: -5.09 Total: 20.42 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -33.95 -9.76 -43.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086331732.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.338 kcal (2) G-P(sol) polarization free energy of solvation -33.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.715 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds