Wall clock time and date at job start Tue Mar 31 2020 03:58:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.47013 * 110.99969 * 2 1 4 4 C 1.53096 * 109.25876 * 182.39381 * 3 2 1 5 5 O 1.43021 * 109.25715 * 303.14957 * 4 3 2 6 6 C 1.43011 * 113.73876 * 58.66875 * 5 4 3 7 7 H 1.09005 * 109.50662 * 61.30505 * 6 5 4 8 8 C 1.50699 * 109.50707 * 181.39615 * 6 5 4 9 9 O 1.21273 * 120.00253 * 5.00156 * 8 6 5 10 10 N 1.34777 * 119.99831 * 185.00149 * 8 6 5 11 11 C 1.46503 * 120.00065 * 180.02562 * 10 8 6 12 12 C 1.53000 * 109.47131 * 180.02562 * 11 10 8 13 13 H 1.08993 * 112.90994 * 43.74713 * 12 11 10 14 14 C 1.53783 * 113.61272 * 174.99978 * 12 11 10 15 15 C 1.53775 * 87.08490 * 139.97643 * 14 12 11 16 16 H 1.08992 * 113.61649 * 219.93466 * 15 14 12 17 17 N 1.46502 * 113.61436 * 89.11310 * 15 14 12 18 18 C 1.36930 * 120.00159 * 155.00234 * 17 15 14 19 19 H 1.08000 * 119.99841 * 0.02562 * 18 17 15 20 20 C 1.38810 * 120.00182 * 179.97438 * 18 17 15 21 21 N 1.31622 * 119.99887 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 120.00212 * 179.97438 * 20 18 17 23 23 H 1.48506 * 109.47297 * 89.99941 * 22 20 18 24 24 H 1.48503 * 109.47261 * 330.00122 * 22 20 18 25 25 H 1.48500 * 109.47454 * 210.00115 * 22 20 18 26 26 C 1.53785 * 113.60939 * 272.49102 * 12 11 10 27 27 C 1.47015 * 110.99748 * 123.63030 * 2 1 3 28 28 H 1.09003 * 109.47320 * 63.95160 * 1 2 3 29 29 H 1.08999 * 109.47082 * 183.95716 * 1 2 3 30 30 H 1.09004 * 109.47101 * 303.95930 * 1 2 3 31 31 H 1.09003 * 109.50990 * 62.45602 * 3 2 1 32 32 H 1.09004 * 109.50661 * 302.32829 * 3 2 1 33 33 H 1.08998 * 109.50719 * 183.21405 * 4 3 2 34 34 H 1.08995 * 109.54615 * 63.10363 * 4 3 2 35 35 H 0.96999 * 120.00156 * 359.97438 * 10 8 6 36 36 H 1.09003 * 109.47210 * 59.99254 * 11 10 8 37 37 H 1.09007 * 109.46633 * 299.99561 * 11 10 8 38 38 H 1.09006 * 113.61547 * 25.42252 * 14 12 11 39 39 H 1.09005 * 113.61078 * 254.52672 * 14 12 11 40 40 H 0.97008 * 119.99482 * 335.00289 * 17 15 14 41 41 H 0.96993 * 120.00105 * 359.97438 * 21 20 18 42 42 H 1.08997 * 113.61314 * 105.47764 * 26 12 11 43 43 H 1.08997 * 113.61718 * 334.57056 * 26 12 11 44 44 H 1.08997 * 109.50447 * 57.67759 * 27 2 1 45 45 H 1.08991 * 109.50826 * 297.54450 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9959 1.3725 0.0000 4 6 3.5249 1.3264 -0.0604 5 8 4.0175 0.5574 1.0403 6 6 3.5250 -0.7849 1.0710 7 1 3.8391 -1.3086 0.1681 8 6 4.0742 -1.4948 2.2815 9 8 4.7402 -0.8858 3.0915 10 7 3.8251 -2.8068 2.4639 11 6 4.3584 -3.4969 3.6410 12 6 3.9336 -4.9663 3.6067 13 1 4.0404 -5.4160 2.6197 14 6 4.5443 -5.8107 4.7377 15 6 3.1781 -6.5076 4.8488 16 1 2.8715 -6.7064 5.8757 17 7 3.0440 -7.6784 3.9784 18 6 2.1611 -8.6740 4.3011 19 1 1.5632 -8.5960 5.1971 20 6 2.0336 -9.7830 3.4761 21 7 2.7619 -9.8779 2.3838 22 14 0.8297 -11.1416 3.9167 23 1 -0.4930 -10.8473 3.3089 24 1 0.6896 -11.2193 5.3931 25 1 1.3350 -12.4382 3.3986 26 6 2.5649 -5.2271 4.2577 27 6 1.9958 -0.7602 1.1428 28 1 -0.3634 0.4513 -0.9233 29 1 -0.3633 -1.0252 0.0709 30 1 -0.3633 0.5741 0.8524 31 1 1.6828 1.8826 0.9110 32 1 1.6133 1.9092 -0.8682 33 1 3.9222 2.3398 -0.0030 34 1 3.8392 0.8648 -0.9964 35 1 3.2920 -3.2939 1.8163 36 1 3.9703 -3.0269 4.5447 37 1 5.4467 -3.4335 3.6372 38 1 4.8114 -5.2300 5.6207 39 1 5.3456 -6.4709 4.4057 40 1 3.5808 -7.7482 3.1734 41 1 3.3873 -9.1726 2.1552 42 1 1.7682 -5.4163 3.5383 43 1 2.2908 -4.4870 5.0095 44 1 1.6134 -1.7802 1.1087 45 1 1.6827 -0.2842 2.0720 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086331732.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:58:56 Heat of formation + Delta-G solvation = -64.700878 kcal Electronic energy + Delta-G solvation = -24195.875241 eV Core-core repulsion = 20634.438860 eV Total energy + Delta-G solvation = -3561.436380 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.52409 -40.39573 -39.55740 -36.82473 -36.22216 -35.23185 -32.84756 -31.74643 -29.98338 -28.55442 -26.53286 -26.09348 -25.41933 -25.14001 -23.24942 -22.03471 -21.43082 -20.10599 -19.46740 -18.54054 -17.93814 -17.19504 -16.81619 -16.73973 -16.58396 -16.14247 -16.05741 -15.78054 -15.67522 -15.30596 -15.07465 -14.87160 -14.51243 -14.26017 -13.68518 -13.42425 -13.35253 -13.02062 -12.95792 -12.85505 -12.77301 -12.55929 -12.47255 -11.95215 -11.86850 -11.76871 -11.56834 -11.35908 -11.06911 -10.90661 -10.84459 -10.74084 -10.18421 -9.55992 -9.10812 -8.39025 -5.33197 1.39514 1.59540 1.69520 1.73139 1.83879 2.65625 2.70989 2.96709 3.38733 3.54193 3.59487 3.63234 3.69241 3.81429 3.84940 3.92315 3.99400 4.09763 4.23128 4.26145 4.31107 4.43148 4.49786 4.58599 4.59748 4.63555 4.69833 4.75314 4.85133 4.86983 4.90308 4.97701 5.01746 5.17030 5.25330 5.40735 5.50641 5.66774 5.73757 5.83618 5.94203 6.41618 6.50175 7.07340 7.10221 8.00757 8.11231 9.12823 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.019825 B = 0.002812 C = 0.002568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1412.034585 B = 9953.955414 C =10898.931391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.545 5.545 3 C 0.015 3.985 4 C 0.057 3.943 5 O -0.388 6.388 6 C 0.082 3.918 7 H 0.110 0.890 8 C 0.519 3.481 9 O -0.569 6.569 10 N -0.710 5.710 11 C 0.141 3.859 12 C -0.100 4.100 13 H 0.084 0.916 14 C -0.135 4.135 15 C 0.147 3.853 16 H 0.056 0.944 17 N -0.732 5.732 18 C -0.331 4.331 19 H 0.066 0.934 20 C -0.104 4.104 21 N -0.975 5.975 22 Si 1.129 2.871 23 H -0.284 1.284 24 H -0.274 1.274 25 H -0.294 1.294 26 C -0.152 4.152 27 C 0.034 3.966 28 H 0.088 0.912 29 H 0.076 0.924 30 H 0.028 0.972 31 H 0.037 0.963 32 H 0.113 0.887 33 H 0.121 0.879 34 H 0.072 0.928 35 H 0.414 0.586 36 H 0.069 0.931 37 H 0.065 0.935 38 H 0.106 0.894 39 H 0.058 0.942 40 H 0.362 0.638 41 H 0.245 0.755 42 H 0.049 0.951 43 H 0.092 0.908 44 H 0.106 0.894 45 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.512 22.855 -5.336 23.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.271 5.271 3 C -0.113 4.113 4 C -0.020 4.020 5 O -0.307 6.307 6 C 0.020 3.980 7 H 0.128 0.872 8 C 0.304 3.696 9 O -0.447 6.447 10 N -0.363 5.363 11 C 0.018 3.982 12 C -0.119 4.119 13 H 0.103 0.897 14 C -0.175 4.175 15 C 0.037 3.963 16 H 0.074 0.926 17 N -0.372 5.372 18 C -0.463 4.463 19 H 0.084 0.916 20 C -0.295 4.295 21 N -0.623 5.623 22 Si 0.954 3.046 23 H -0.211 1.211 24 H -0.200 1.200 25 H -0.221 1.221 26 C -0.193 4.193 27 C -0.095 4.095 28 H 0.106 0.894 29 H 0.094 0.906 30 H 0.046 0.954 31 H 0.055 0.945 32 H 0.131 0.869 33 H 0.138 0.862 34 H 0.090 0.910 35 H 0.250 0.750 36 H 0.087 0.913 37 H 0.083 0.917 38 H 0.124 0.876 39 H 0.076 0.924 40 H 0.194 0.806 41 H 0.055 0.945 42 H 0.068 0.932 43 H 0.110 0.890 44 H 0.125 0.875 45 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -2.507 21.666 -5.290 22.443 hybrid contribution 0.242 1.430 0.469 1.525 sum -2.265 23.096 -4.821 23.702 Atomic orbital electron populations 1.22474 0.85147 1.02965 1.01920 1.62268 1.09717 1.14085 1.40986 1.22917 0.96198 0.89528 1.02694 1.23006 0.92676 0.97090 0.89184 1.88084 1.70122 1.22372 1.50095 1.21939 0.93814 0.85454 0.96751 0.87233 1.20488 0.79937 0.82314 0.86843 1.90695 1.40534 1.66950 1.46540 1.45879 1.54620 1.08939 1.26829 1.21331 0.98590 0.90572 0.87740 1.22492 0.97261 0.93162 0.98992 0.89736 1.23367 0.97071 0.98060 0.98961 1.21319 0.95602 0.85975 0.93389 0.92591 1.42306 1.47752 1.20298 1.26834 1.20429 1.17016 1.00555 1.08282 0.91589 1.27154 1.04513 1.02479 0.95341 1.70965 1.28016 1.36202 1.27144 0.82599 0.73452 0.73078 0.75490 1.21091 1.19962 1.22065 1.23706 0.96000 0.99251 1.00300 1.22632 0.92877 1.01182 0.92838 0.89383 0.90558 0.95373 0.94503 0.86918 0.86158 0.90970 0.74953 0.91283 0.91670 0.87572 0.92351 0.80602 0.94453 0.93174 0.88958 0.87549 0.94675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 9.63 127.69 1.23 1.50 16 2 N -0.55 -8.36 4.99 -921.42 -4.59 -12.95 16 3 C 0.01 0.19 5.66 86.31 0.49 0.68 16 4 C 0.06 0.85 7.01 72.01 0.50 1.36 16 5 O -0.39 -9.35 10.01 -130.02 -1.30 -10.65 16 6 C 0.08 1.72 3.22 29.88 0.10 1.81 16 7 H 0.11 1.91 8.14 -2.38 -0.02 1.90 16 8 C 0.52 13.61 7.18 87.66 0.63 14.24 16 9 O -0.57 -20.14 16.51 15.95 0.26 -19.88 16 10 N -0.71 -15.76 5.52 -463.05 -2.56 -18.32 16 11 C 0.14 3.43 5.51 86.38 0.48 3.91 16 12 C -0.10 -2.72 3.63 -10.27 -0.04 -2.75 16 13 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 14 C -0.14 -4.03 7.39 31.12 0.23 -3.80 16 15 C 0.15 5.55 4.56 45.52 0.21 5.76 16 16 H 0.06 2.17 8.10 -2.39 -0.02 2.16 16 17 N -0.73 -35.63 5.31 -320.45 -1.70 -37.34 16 18 C -0.33 -18.27 9.97 84.03 0.84 -17.43 16 19 H 0.07 3.57 7.83 -2.91 -0.02 3.55 16 20 C -0.10 -5.91 5.50 84.86 0.47 -5.45 16 21 N -0.98 -59.95 13.70 21.65 0.30 -59.66 16 22 Si 1.13 51.20 29.92 68.60 2.05 53.25 16 23 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 24 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 25 H -0.29 -13.57 7.11 99.48 0.71 -12.87 16 26 C -0.15 -4.67 7.43 31.12 0.23 -4.44 16 27 C 0.03 0.60 4.89 86.32 0.42 1.02 16 28 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 29 H 0.08 0.89 8.08 -2.39 -0.02 0.87 16 30 H 0.03 0.35 8.14 -2.39 -0.02 0.33 16 31 H 0.04 0.56 8.14 -2.39 -0.02 0.55 16 32 H 0.11 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.12 1.35 8.14 -2.39 -0.02 1.33 16 34 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 35 H 0.41 7.44 8.35 -92.71 -0.77 6.67 16 36 H 0.07 1.72 7.85 -2.39 -0.02 1.70 16 37 H 0.06 1.65 8.14 -2.38 -0.02 1.64 16 38 H 0.11 2.62 8.10 -2.38 -0.02 2.60 16 39 H 0.06 1.87 8.14 -2.38 -0.02 1.85 16 40 H 0.36 18.28 6.73 -92.70 -0.62 17.66 16 41 H 0.25 14.92 6.77 -92.71 -0.63 14.30 16 42 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 43 H 0.09 2.44 7.90 -2.39 -0.02 2.42 16 44 H 0.11 1.59 7.99 -2.39 -0.02 1.57 16 45 H 0.03 0.73 8.14 -2.39 -0.02 0.71 16 Total: -1.00 -73.61 364.25 -2.03 -75.65 By element: Atomic # 1 Polarization: 33.76 SS G_CDS: -0.28 Total: 33.48 kcal Atomic # 6 Polarization: -9.38 SS G_CDS: 5.78 Total: -3.59 kcal Atomic # 7 Polarization: -119.70 SS G_CDS: -8.55 Total: -128.26 kcal Atomic # 8 Polarization: -29.49 SS G_CDS: -1.04 Total: -30.53 kcal Atomic # 14 Polarization: 51.20 SS G_CDS: 2.05 Total: 53.25 kcal Total: -73.61 -2.03 -75.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086331732.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.945 kcal (2) G-P(sol) polarization free energy of solvation -73.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.646 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds