Wall clock time and date at job start Tue Mar 31 2020 03:47:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46502 * 109.46860 * 2 1 4 4 C 1.34780 * 119.99751 * 180.02562 * 3 2 1 5 5 O 1.21279 * 119.99896 * 359.97438 * 4 3 2 6 6 C 1.50699 * 119.99768 * 179.97438 * 4 3 2 7 7 C 1.53002 * 109.47090 * 179.97438 * 6 4 3 8 8 C 1.50697 * 109.47431 * 179.97438 * 7 6 4 9 9 O 1.21283 * 119.99626 * 0.02562 * 8 7 6 10 10 N 1.34772 * 120.00066 * 179.97438 * 8 7 6 11 11 C 1.46500 * 120.00059 * 180.02562 * 10 8 7 12 12 C 1.53002 * 109.47425 * 180.02562 * 11 10 8 13 13 C 1.53781 * 113.61609 * 175.00005 * 12 11 10 14 14 C 1.53781 * 87.08070 * 139.98229 * 13 12 11 15 15 N 1.46497 * 113.61305 * 219.93536 * 14 13 12 16 16 C 1.36944 * 119.99791 * 203.46713 * 15 14 13 17 17 H 1.07993 * 120.00042 * 0.02562 * 16 15 14 18 18 C 1.38812 * 119.99770 * 179.97438 * 16 15 14 19 19 N 1.31624 * 120.00274 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99962 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47017 * 89.99868 * 20 18 16 22 22 H 1.48492 * 109.47131 * 210.00443 * 20 18 16 23 23 H 1.48501 * 109.46802 * 330.00196 * 20 18 16 24 24 C 1.53786 * 87.17350 * 334.52830 * 14 13 12 25 25 H 1.09006 * 109.47108 * 59.99899 * 1 2 3 26 26 H 1.09002 * 109.47108 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47351 * 300.00357 * 1 2 3 28 28 H 1.09000 * 109.47308 * 240.00179 * 2 1 3 29 29 H 1.08997 * 109.47283 * 119.99966 * 2 1 3 30 30 H 0.96997 * 120.00196 * 0.02562 * 3 2 1 31 31 H 1.09005 * 109.47291 * 60.00328 * 6 4 3 32 32 H 1.08995 * 109.47109 * 299.99502 * 6 4 3 33 33 H 1.09005 * 109.47358 * 59.99628 * 7 6 4 34 34 H 1.09006 * 109.47182 * 300.00313 * 7 6 4 35 35 H 0.96996 * 120.00586 * 0.02562 * 10 8 7 36 36 H 1.08997 * 109.47114 * 60.00231 * 11 10 8 37 37 H 1.09006 * 109.47306 * 300.00712 * 11 10 8 38 38 H 1.08996 * 112.84723 * 43.80825 * 12 11 10 39 39 H 1.08999 * 113.61181 * 25.43284 * 13 12 11 40 40 H 1.08998 * 113.61680 * 254.52836 * 13 12 11 41 41 H 1.09002 * 113.61445 * 89.11830 * 14 13 12 42 42 H 0.96995 * 120.00146 * 23.47603 * 15 14 13 43 43 H 0.96996 * 120.00281 * 179.97438 * 19 18 16 44 44 H 1.08992 * 113.61675 * 140.02412 * 24 14 13 45 45 H 1.09000 * 113.60973 * 270.92699 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 3.3433 1.6275 -0.0005 5 8 4.1314 0.7057 -0.0005 6 6 3.8456 3.0484 -0.0011 7 6 5.3756 3.0484 -0.0010 8 6 5.8780 4.4692 -0.0022 9 8 5.0898 5.3910 -0.0026 10 7 7.2030 4.7155 -0.0018 11 6 7.6914 6.0967 -0.0024 12 6 9.2214 6.0967 -0.0024 13 6 9.8374 7.5004 -0.1258 14 6 10.8837 7.0460 0.9055 15 7 11.2238 8.0767 1.8894 16 6 12.4257 8.0284 2.5440 17 1 13.1229 7.2307 2.3346 18 6 12.7482 9.0053 3.4760 19 7 11.8987 9.9778 3.7309 20 14 14.3880 8.9398 4.3684 21 1 15.4041 9.6957 3.5930 22 1 14.2424 9.5455 5.7163 23 1 14.8208 7.5258 4.5052 24 6 9.8386 6.0358 1.4077 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 1.3879 2.1185 0.0004 31 1 3.4826 3.5625 0.8889 32 1 3.4820 3.5619 -0.8911 33 1 5.7391 2.5341 -0.8907 34 1 5.7389 2.5349 0.8893 35 1 7.8334 3.9783 -0.0011 36 1 7.3277 6.6110 0.8871 37 1 7.3283 6.6101 -0.8928 38 1 9.6446 5.3716 -0.6974 39 1 9.1858 8.2963 0.2347 40 1 10.2564 7.7083 -1.1103 41 1 11.7625 6.5800 0.4597 42 1 10.5977 8.7933 2.0773 43 1 12.1239 10.6602 4.3823 44 1 10.2585 5.0623 1.6604 45 1 9.1874 6.4322 2.1868 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001100181819.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:47:06 Heat of formation + Delta-G solvation = -63.262397 kcal Electronic energy + Delta-G solvation = -22796.670444 eV Core-core repulsion = 19235.296441 eV Total energy + Delta-G solvation = -3561.374003 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.31775 -39.58248 -38.42201 -35.75018 -34.70389 -33.32646 -33.12933 -30.97902 -30.24490 -27.79658 -25.51860 -25.07614 -23.79848 -22.98320 -21.08219 -20.92472 -20.25622 -19.03376 -17.86013 -17.04316 -16.51427 -16.49216 -16.32088 -15.93056 -15.63284 -14.91033 -14.76810 -14.50282 -14.11508 -13.64346 -13.62756 -13.40946 -13.02328 -12.91163 -12.77690 -12.35366 -12.27807 -11.98531 -11.89287 -11.80338 -11.48309 -11.35907 -11.22755 -10.84049 -10.52477 -10.27552 -10.19379 -10.14137 -9.84634 -9.81190 -9.51141 -9.47659 -9.02170 -8.86304 -6.95859 -5.78017 -3.06873 2.29487 2.58192 2.69091 3.25722 3.43040 3.48209 3.49972 4.27441 4.46775 4.58443 4.58669 4.66664 4.77866 4.83779 4.85670 4.97699 5.04920 5.23866 5.29699 5.33827 5.39804 5.47083 5.51666 5.52572 5.53865 5.62374 5.82875 5.85648 5.94057 6.00582 6.09763 6.26792 6.31769 6.36927 6.46719 6.60427 6.83438 7.05596 7.12201 7.46124 7.69478 7.83558 8.16561 8.40598 9.51633 10.10052 10.44227 11.44369 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.034478 B = 0.001872 C = 0.001844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 811.925511 B =14956.684209 C =15179.242809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.113 3.887 3 N -0.734 5.734 4 C 0.513 3.487 5 O -0.542 6.542 6 C -0.124 4.124 7 C -0.126 4.126 8 C 0.510 3.490 9 O -0.548 6.548 10 N -0.724 5.724 11 C 0.131 3.869 12 C -0.128 4.128 13 C -0.142 4.142 14 C 0.165 3.835 15 N -0.713 5.713 16 C -0.244 4.244 17 H 0.071 0.929 18 C -0.013 4.013 19 N -0.932 5.932 20 Si 0.907 3.093 21 H -0.290 1.290 22 H -0.291 1.291 23 H -0.282 1.282 24 C -0.160 4.160 25 H 0.062 0.938 26 H 0.074 0.926 27 H 0.062 0.938 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.402 0.598 31 H 0.102 0.898 32 H 0.102 0.898 33 H 0.100 0.900 34 H 0.101 0.899 35 H 0.402 0.598 36 H 0.069 0.931 37 H 0.064 0.936 38 H 0.088 0.912 39 H 0.080 0.920 40 H 0.061 0.939 41 H 0.074 0.926 42 H 0.385 0.615 43 H 0.256 0.744 44 H 0.054 0.946 45 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.283 -18.181 -10.536 29.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.011 4.011 3 N -0.388 5.388 4 C 0.300 3.700 5 O -0.419 6.419 6 C -0.165 4.165 7 C -0.166 4.166 8 C 0.296 3.704 9 O -0.426 6.426 10 N -0.375 5.375 11 C 0.008 3.992 12 C -0.147 4.147 13 C -0.181 4.181 14 C 0.053 3.947 15 N -0.351 5.351 16 C -0.376 4.376 17 H 0.089 0.911 18 C -0.209 4.209 19 N -0.580 5.580 20 Si 0.738 3.262 21 H -0.217 1.217 22 H -0.218 1.218 23 H -0.207 1.207 24 C -0.202 4.202 25 H 0.081 0.919 26 H 0.092 0.908 27 H 0.081 0.919 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.237 0.763 31 H 0.121 0.879 32 H 0.120 0.880 33 H 0.118 0.882 34 H 0.119 0.881 35 H 0.236 0.764 36 H 0.088 0.912 37 H 0.082 0.918 38 H 0.106 0.894 39 H 0.099 0.901 40 H 0.080 0.920 41 H 0.092 0.908 42 H 0.219 0.781 43 H 0.065 0.935 44 H 0.073 0.927 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -21.075 -18.188 -10.436 29.730 hybrid contribution 0.609 0.206 0.625 0.897 sum -20.466 -17.982 -9.811 28.957 Atomic orbital electron populations 1.22011 0.94377 1.03311 1.02631 1.21303 0.94294 0.83052 1.02446 1.46088 1.07341 1.09049 1.76286 1.20795 0.82121 0.91769 0.75320 1.90715 1.55261 1.46686 1.49230 1.21365 0.95934 0.93148 1.06032 1.21365 0.95215 0.94109 1.05910 1.20615 0.82518 0.91290 0.75957 1.90703 1.55330 1.46610 1.49994 1.46063 1.06860 1.09694 1.74889 1.21442 0.93779 0.81891 1.02073 1.22691 0.92519 0.99580 0.99892 1.23422 0.99272 0.95113 1.00326 1.21528 0.93308 0.90187 0.89684 1.42412 1.19481 1.28413 1.44818 1.19309 0.94223 1.07891 1.16128 0.91092 1.24769 0.98427 0.97549 1.00174 1.69662 1.35681 1.15177 1.37511 0.86187 0.83553 0.77372 0.79057 1.21694 1.21772 1.20748 1.23989 1.00557 1.01044 0.94566 0.91914 0.90754 0.91874 0.91507 0.91476 0.76325 0.87934 0.88008 0.88189 0.88065 0.76417 0.91223 0.91798 0.89360 0.90108 0.91999 0.90756 0.78076 0.93462 0.92746 0.90361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.52 10.03 37.16 0.37 -0.14 16 2 C 0.11 0.64 6.39 -4.04 -0.03 0.62 16 3 N -0.73 -4.54 5.56 -60.30 -0.33 -4.88 16 4 C 0.51 4.56 7.83 -10.98 -0.09 4.48 16 5 O -0.54 -6.80 15.98 5.56 0.09 -6.71 16 6 C -0.12 -0.99 4.99 -27.88 -0.14 -1.13 16 7 C -0.13 -1.11 4.99 -27.88 -0.14 -1.25 16 8 C 0.51 5.97 7.83 -10.99 -0.09 5.88 16 9 O -0.55 -8.35 15.98 5.56 0.09 -8.26 16 10 N -0.72 -7.95 5.56 -60.29 -0.33 -8.28 16 11 C 0.13 1.70 5.51 -4.04 -0.02 1.68 16 12 C -0.13 -1.69 3.76 -89.67 -0.34 -2.02 16 13 C -0.14 -2.24 7.39 -25.92 -0.19 -2.43 16 14 C 0.16 3.18 4.47 -67.12 -0.30 2.89 16 15 N -0.71 -17.83 5.41 -52.64 -0.28 -18.11 16 16 C -0.24 -6.78 9.97 -15.06 -0.15 -6.93 16 17 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 18 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 19 N -0.93 -28.22 13.06 55.49 0.72 -27.50 16 20 Si 0.91 22.36 29.55 -169.99 -5.02 17.34 16 21 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 22 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 23 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 24 C -0.16 -2.65 7.45 -25.77 -0.19 -2.84 16 25 H 0.06 0.17 8.14 -51.93 -0.42 -0.25 16 26 H 0.07 0.18 8.14 -51.93 -0.42 -0.24 16 27 H 0.06 0.18 8.14 -51.93 -0.42 -0.24 16 28 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 29 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 30 H 0.40 1.47 8.47 -40.82 -0.35 1.12 16 31 H 0.10 0.78 8.10 -51.93 -0.42 0.36 16 32 H 0.10 0.74 8.10 -51.93 -0.42 0.32 16 33 H 0.10 0.81 8.10 -51.93 -0.42 0.39 16 34 H 0.10 0.87 8.10 -51.93 -0.42 0.45 16 35 H 0.40 3.48 8.47 -40.82 -0.35 3.13 16 36 H 0.07 1.03 7.85 -51.93 -0.41 0.63 16 37 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.09 1.02 8.14 -51.93 -0.42 0.59 16 39 H 0.08 1.34 8.07 -51.93 -0.42 0.92 16 40 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 41 H 0.07 1.42 8.11 -51.93 -0.42 1.00 16 42 H 0.39 10.25 7.91 -40.82 -0.32 9.93 16 43 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 44 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 45 H 0.08 1.43 7.90 -51.93 -0.41 1.02 16 LS Contribution 377.12 15.07 5.68 5.68 Total: -1.00 -34.65 377.12 -8.49 -43.14 By element: Atomic # 1 Polarization: 16.95 SS G_CDS: -7.71 Total: 9.25 kcal Atomic # 6 Polarization: -0.28 SS G_CDS: -1.39 Total: -1.67 kcal Atomic # 7 Polarization: -58.54 SS G_CDS: -0.23 Total: -58.77 kcal Atomic # 8 Polarization: -15.14 SS G_CDS: 0.18 Total: -14.97 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.02 Total: 17.34 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -34.65 -8.49 -43.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100181819.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.121 kcal (2) G-P(sol) polarization free energy of solvation -34.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.142 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds