Wall clock time and date at job start Tue Mar 31 2020 03:47:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46502 * 109.46860 * 2 1 4 4 C 1.34780 * 119.99751 * 180.02562 * 3 2 1 5 5 O 1.21279 * 119.99896 * 359.97438 * 4 3 2 6 6 C 1.50699 * 119.99768 * 179.97438 * 4 3 2 7 7 C 1.53002 * 109.47090 * 179.97438 * 6 4 3 8 8 C 1.50697 * 109.47431 * 179.97438 * 7 6 4 9 9 O 1.21283 * 119.99626 * 0.02562 * 8 7 6 10 10 N 1.34772 * 120.00066 * 179.97438 * 8 7 6 11 11 C 1.46500 * 120.00059 * 180.02562 * 10 8 7 12 12 C 1.53002 * 109.47425 * 180.02562 * 11 10 8 13 13 C 1.53781 * 113.61609 * 175.00005 * 12 11 10 14 14 C 1.53781 * 87.08070 * 139.98229 * 13 12 11 15 15 N 1.46497 * 113.61305 * 219.93536 * 14 13 12 16 16 C 1.36944 * 119.99791 * 203.46713 * 15 14 13 17 17 H 1.07993 * 120.00042 * 0.02562 * 16 15 14 18 18 C 1.38812 * 119.99770 * 179.97438 * 16 15 14 19 19 N 1.31624 * 120.00274 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99962 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47017 * 89.99868 * 20 18 16 22 22 H 1.48492 * 109.47131 * 210.00443 * 20 18 16 23 23 H 1.48501 * 109.46802 * 330.00196 * 20 18 16 24 24 C 1.53786 * 87.17350 * 334.52830 * 14 13 12 25 25 H 1.09006 * 109.47108 * 59.99899 * 1 2 3 26 26 H 1.09002 * 109.47108 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47351 * 300.00357 * 1 2 3 28 28 H 1.09000 * 109.47308 * 240.00179 * 2 1 3 29 29 H 1.08997 * 109.47283 * 119.99966 * 2 1 3 30 30 H 0.96997 * 120.00196 * 0.02562 * 3 2 1 31 31 H 1.09005 * 109.47291 * 60.00328 * 6 4 3 32 32 H 1.08995 * 109.47109 * 299.99502 * 6 4 3 33 33 H 1.09005 * 109.47358 * 59.99628 * 7 6 4 34 34 H 1.09006 * 109.47182 * 300.00313 * 7 6 4 35 35 H 0.96996 * 120.00586 * 0.02562 * 10 8 7 36 36 H 1.08997 * 109.47114 * 60.00231 * 11 10 8 37 37 H 1.09006 * 109.47306 * 300.00712 * 11 10 8 38 38 H 1.08996 * 112.84723 * 43.80825 * 12 11 10 39 39 H 1.08999 * 113.61181 * 25.43284 * 13 12 11 40 40 H 1.08998 * 113.61680 * 254.52836 * 13 12 11 41 41 H 1.09002 * 113.61445 * 89.11830 * 14 13 12 42 42 H 0.96995 * 120.00146 * 23.47603 * 15 14 13 43 43 H 0.96996 * 120.00281 * 179.97438 * 19 18 16 44 44 H 1.08992 * 113.61675 * 140.02412 * 24 14 13 45 45 H 1.09000 * 113.60973 * 270.92699 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 3.3433 1.6275 -0.0005 5 8 4.1314 0.7057 -0.0005 6 6 3.8456 3.0484 -0.0011 7 6 5.3756 3.0484 -0.0010 8 6 5.8780 4.4692 -0.0022 9 8 5.0898 5.3910 -0.0026 10 7 7.2030 4.7155 -0.0018 11 6 7.6914 6.0967 -0.0024 12 6 9.2214 6.0967 -0.0024 13 6 9.8374 7.5004 -0.1258 14 6 10.8837 7.0460 0.9055 15 7 11.2238 8.0767 1.8894 16 6 12.4257 8.0284 2.5440 17 1 13.1229 7.2307 2.3346 18 6 12.7482 9.0053 3.4760 19 7 11.8987 9.9778 3.7309 20 14 14.3880 8.9398 4.3684 21 1 15.4041 9.6957 3.5930 22 1 14.2424 9.5455 5.7163 23 1 14.8208 7.5258 4.5052 24 6 9.8386 6.0358 1.4077 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 1.3879 2.1185 0.0004 31 1 3.4826 3.5625 0.8889 32 1 3.4820 3.5619 -0.8911 33 1 5.7391 2.5341 -0.8907 34 1 5.7389 2.5349 0.8893 35 1 7.8334 3.9783 -0.0011 36 1 7.3277 6.6110 0.8871 37 1 7.3283 6.6101 -0.8928 38 1 9.6446 5.3716 -0.6974 39 1 9.1858 8.2963 0.2347 40 1 10.2564 7.7083 -1.1103 41 1 11.7625 6.5800 0.4597 42 1 10.5977 8.7933 2.0773 43 1 12.1239 10.6602 4.3823 44 1 10.2585 5.0623 1.6604 45 1 9.1874 6.4322 2.1868 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001100181819.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:47:05 Heat of formation + Delta-G solvation = -89.242210 kcal Electronic energy + Delta-G solvation = -22797.797014 eV Core-core repulsion = 19235.296441 eV Total energy + Delta-G solvation = -3562.500572 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.14358 -40.50414 -39.70444 -36.32815 -36.04041 -34.97467 -33.94071 -32.19019 -31.40220 -28.96896 -26.51245 -26.44804 -25.50746 -23.51781 -22.40827 -21.72698 -21.15248 -20.39332 -19.06488 -18.59370 -17.34516 -17.25698 -17.19042 -16.76340 -16.51143 -16.39795 -16.05363 -15.44374 -15.36193 -15.01666 -14.77270 -14.53709 -14.13926 -13.74415 -13.41298 -13.36520 -13.22502 -12.99724 -12.92586 -12.89172 -12.69003 -12.63947 -12.37554 -12.18657 -12.14971 -12.07308 -11.58609 -11.54621 -11.09234 -10.94722 -10.86747 -10.75938 -10.10142 -10.02944 -8.96894 -7.94158 -5.22443 1.47657 1.49312 1.57664 1.60983 1.65531 2.02317 2.46587 2.57345 3.37823 3.58716 3.73069 3.77046 3.89735 3.99817 4.11156 4.12842 4.22438 4.23302 4.27380 4.36636 4.44770 4.52252 4.58290 4.66779 4.80357 4.87394 4.94584 4.98197 4.99006 5.00357 5.05866 5.07557 5.23970 5.26696 5.38650 5.46149 5.48447 5.54711 5.74929 6.28278 6.51948 6.59355 7.22149 7.27810 7.33746 8.12391 8.34006 9.29338 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.034478 B = 0.001872 C = 0.001844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 811.925511 B =14956.684209 C =15179.242809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.109 3.891 3 N -0.723 5.723 4 C 0.513 3.487 5 O -0.582 6.582 6 C -0.119 4.119 7 C -0.117 4.117 8 C 0.511 3.489 9 O -0.585 6.585 10 N -0.716 5.716 11 C 0.138 3.862 12 C -0.095 4.095 13 C -0.136 4.136 14 C 0.141 3.859 15 N -0.730 5.730 16 C -0.243 4.243 17 H 0.079 0.921 18 C -0.079 4.079 19 N -0.972 5.972 20 Si 0.973 3.027 21 H -0.287 1.287 22 H -0.298 1.298 23 H -0.268 1.268 24 C -0.153 4.153 25 H 0.070 0.930 26 H 0.082 0.918 27 H 0.068 0.932 28 H 0.057 0.943 29 H 0.055 0.945 30 H 0.416 0.584 31 H 0.106 0.894 32 H 0.110 0.890 33 H 0.112 0.888 34 H 0.106 0.894 35 H 0.416 0.584 36 H 0.046 0.954 37 H 0.066 0.934 38 H 0.121 0.879 39 H 0.067 0.933 40 H 0.079 0.921 41 H 0.079 0.921 42 H 0.372 0.628 43 H 0.250 0.750 44 H 0.066 0.934 45 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.690 -19.975 -11.701 31.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.014 4.014 3 N -0.376 5.376 4 C 0.301 3.699 5 O -0.463 6.463 6 C -0.160 4.160 7 C -0.158 4.158 8 C 0.298 3.702 9 O -0.466 6.466 10 N -0.368 5.368 11 C 0.014 3.986 12 C -0.114 4.114 13 C -0.175 4.175 14 C 0.032 3.968 15 N -0.368 5.368 16 C -0.375 4.375 17 H 0.097 0.903 18 C -0.271 4.271 19 N -0.623 5.623 20 Si 0.802 3.198 21 H -0.214 1.214 22 H -0.225 1.225 23 H -0.193 1.193 24 C -0.194 4.194 25 H 0.089 0.911 26 H 0.101 0.899 27 H 0.087 0.913 28 H 0.076 0.924 29 H 0.074 0.926 30 H 0.253 0.747 31 H 0.124 0.876 32 H 0.128 0.872 33 H 0.130 0.870 34 H 0.124 0.876 35 H 0.252 0.748 36 H 0.064 0.936 37 H 0.085 0.915 38 H 0.139 0.861 39 H 0.086 0.914 40 H 0.097 0.903 41 H 0.097 0.903 42 H 0.203 0.797 43 H 0.059 0.941 44 H 0.085 0.915 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -21.505 -20.045 -11.642 31.620 hybrid contribution 0.676 0.709 0.929 1.350 sum -20.829 -19.336 -10.713 30.373 Atomic orbital electron populations 1.21962 0.92109 1.04126 1.03275 1.21374 0.96107 0.82485 1.01467 1.46059 1.06849 1.09925 1.74747 1.20931 0.82632 0.91586 0.74779 1.90697 1.56381 1.47764 1.51446 1.21330 0.95403 0.92608 1.06616 1.21327 0.95798 0.91965 1.06662 1.21071 0.82255 0.91987 0.74852 1.90691 1.56242 1.47959 1.51735 1.45960 1.07146 1.09308 1.74359 1.21215 0.93371 0.82917 1.01136 1.22518 0.92556 0.98409 0.97954 1.23303 0.97974 0.96364 0.99859 1.21978 0.94772 0.90096 0.89967 1.42632 1.18581 1.29497 1.46086 1.19743 0.95022 1.07357 1.15408 0.90331 1.25591 1.01966 0.97760 1.01780 1.69825 1.37675 1.16180 1.38589 0.85137 0.79533 0.77803 0.77283 1.21383 1.22458 1.19320 1.23767 0.99324 1.00357 0.95964 0.91141 0.89895 0.91285 0.92413 0.92615 0.74719 0.87612 0.87156 0.87011 0.87610 0.74752 0.93554 0.91543 0.86090 0.91438 0.90264 0.90253 0.79654 0.94125 0.91506 0.92653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.70 10.03 71.98 0.72 0.02 16 2 C 0.11 1.15 6.39 86.38 0.55 1.70 16 3 N -0.72 -8.00 5.56 -463.07 -2.57 -10.57 16 4 C 0.51 8.57 7.83 87.66 0.69 9.26 16 5 O -0.58 -14.25 15.98 -3.03 -0.05 -14.29 16 6 C -0.12 -1.72 4.99 29.85 0.15 -1.57 16 7 C -0.12 -1.87 4.99 29.85 0.15 -1.73 16 8 C 0.51 11.16 7.83 87.66 0.69 11.85 16 9 O -0.59 -17.31 15.98 -3.04 -0.05 -17.36 16 10 N -0.72 -14.19 5.56 -463.06 -2.57 -16.76 16 11 C 0.14 3.34 5.51 86.38 0.48 3.81 16 12 C -0.10 -2.29 3.76 -10.18 -0.04 -2.32 16 13 C -0.14 -4.10 7.39 31.12 0.23 -3.87 16 14 C 0.14 5.33 4.47 45.52 0.20 5.53 16 15 N -0.73 -36.92 5.41 -320.44 -1.73 -38.66 16 16 C -0.24 -13.53 9.97 84.03 0.84 -12.69 16 17 H 0.08 4.15 7.83 -2.91 -0.02 4.12 16 18 C -0.08 -4.57 5.50 84.86 0.47 -4.10 16 19 N -0.97 -60.26 13.06 21.65 0.28 -59.98 16 20 Si 0.97 46.32 29.55 68.60 2.03 48.35 16 21 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 22 H -0.30 -14.35 7.11 99.48 0.71 -13.65 16 23 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 24 C -0.15 -4.86 7.45 31.21 0.23 -4.63 16 25 H 0.07 0.23 8.14 -2.38 -0.02 0.21 16 26 H 0.08 0.26 8.14 -2.39 -0.02 0.24 16 27 H 0.07 0.25 8.14 -2.39 -0.02 0.23 16 28 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 29 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.42 2.29 8.47 -92.71 -0.79 1.51 16 31 H 0.11 1.48 8.10 -2.38 -0.02 1.46 16 32 H 0.11 1.42 8.10 -2.39 -0.02 1.40 16 33 H 0.11 1.56 8.10 -2.38 -0.02 1.54 16 34 H 0.11 1.64 8.10 -2.38 -0.02 1.62 16 35 H 0.42 5.95 8.47 -92.71 -0.79 5.16 16 36 H 0.05 1.36 7.85 -2.39 -0.02 1.35 16 37 H 0.07 1.63 8.14 -2.38 -0.02 1.61 16 38 H 0.12 2.23 8.14 -2.39 -0.02 2.21 16 39 H 0.07 2.24 8.07 -2.39 -0.02 2.22 16 40 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 41 H 0.08 2.90 8.11 -2.39 -0.02 2.88 16 42 H 0.37 20.41 7.91 -92.71 -0.73 19.67 16 43 H 0.25 15.06 8.31 -92.71 -0.77 14.29 16 44 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 45 H 0.05 2.03 7.90 -2.39 -0.02 2.01 16 Total: -1.00 -75.85 377.12 -0.62 -76.47 By element: Atomic # 1 Polarization: 32.86 SS G_CDS: -1.31 Total: 31.55 kcal Atomic # 6 Polarization: -4.10 SS G_CDS: 5.35 Total: 1.25 kcal Atomic # 7 Polarization: -119.37 SS G_CDS: -6.60 Total: -125.97 kcal Atomic # 8 Polarization: -31.56 SS G_CDS: -0.10 Total: -31.65 kcal Atomic # 14 Polarization: 46.32 SS G_CDS: 2.03 Total: 48.35 kcal Total: -75.85 -0.62 -76.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100181819.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.772 kcal (2) G-P(sol) polarization free energy of solvation -75.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.470 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds