Wall clock time and date at job start Tue Mar 31 2020 03:54:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21272 * 120.00026 * 2 1 4 4 N 1.34785 * 119.99887 * 180.02562 * 2 1 3 5 5 C 1.46499 * 119.99971 * 179.97438 * 4 2 1 6 6 C 1.53006 * 109.46670 * 60.00382 * 5 4 2 7 7 C 1.52998 * 109.47316 * 300.00581 * 5 4 2 8 8 C 1.50697 * 109.46866 * 180.02562 * 5 4 2 9 9 O 1.21283 * 119.99626 * 145.00594 * 8 5 4 10 10 N 1.34772 * 120.00066 * 324.99707 * 8 5 4 11 11 C 1.46500 * 120.00059 * 180.02562 * 10 8 5 12 12 C 1.53002 * 109.47425 * 180.02562 * 11 10 8 13 13 C 1.53781 * 113.61609 * 175.00005 * 12 11 10 14 14 C 1.53781 * 87.08070 * 139.98229 * 13 12 11 15 15 N 1.46497 * 113.61305 * 219.93536 * 14 13 12 16 16 C 1.36944 * 119.99791 * 203.46713 * 15 14 13 17 17 H 1.07993 * 120.00042 * 0.02562 * 16 15 14 18 18 C 1.38812 * 119.99770 * 179.97438 * 16 15 14 19 19 N 1.31624 * 120.00274 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99962 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.46726 * 359.97438 * 20 18 16 22 22 H 1.48501 * 109.47021 * 120.00168 * 20 18 16 23 23 H 1.48502 * 109.47101 * 240.00261 * 20 18 16 24 24 C 1.53786 * 87.17350 * 334.52830 * 14 13 12 25 25 H 1.09006 * 109.46953 * 269.99539 * 1 2 3 26 26 H 1.08999 * 109.47003 * 29.99898 * 1 2 3 27 27 H 1.09000 * 109.47148 * 149.99674 * 1 2 3 28 28 H 0.97002 * 119.99638 * 359.97438 * 4 2 1 29 29 H 1.08997 * 109.46430 * 180.02562 * 6 5 4 30 30 H 1.09002 * 109.47004 * 299.99673 * 6 5 4 31 31 H 1.08994 * 109.47526 * 60.00009 * 6 5 4 32 32 H 1.09003 * 109.46561 * 299.99702 * 7 5 4 33 33 H 1.09002 * 109.47514 * 59.99619 * 7 5 4 34 34 H 1.08999 * 109.47026 * 180.02562 * 7 5 4 35 35 H 0.96996 * 120.00586 * 0.02562 * 10 8 5 36 36 H 1.08997 * 109.47114 * 60.00231 * 11 10 8 37 37 H 1.09006 * 109.47306 * 300.00712 * 11 10 8 38 38 H 1.08996 * 112.84723 * 43.80825 * 12 11 10 39 39 H 1.08999 * 113.61181 * 25.43284 * 13 12 11 40 40 H 1.08998 * 113.61680 * 254.52836 * 13 12 11 41 41 H 1.09002 * 113.61445 * 89.11830 * 14 13 12 42 42 H 0.96995 * 120.00146 * 23.47603 * 15 14 13 43 43 H 0.96996 * 120.00281 * 179.97438 * 19 18 16 44 44 H 1.08992 * 113.61675 * 140.02412 * 24 14 13 45 45 H 1.09000 * 113.60973 * 270.92699 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0502 0.0000 4 7 2.1809 -1.1673 -0.0005 5 6 3.6459 -1.1673 -0.0011 6 6 4.1563 -0.4464 1.2482 7 6 4.1555 -0.4457 -1.2503 8 6 4.1481 -2.5881 -0.0022 9 8 5.1613 -2.8726 -0.6052 10 7 3.4716 -3.5425 0.6669 11 6 3.9602 -4.9237 0.6662 12 6 3.0160 -5.7991 1.4928 13 6 3.3723 -7.2946 1.4562 14 6 3.0239 -7.3338 2.9535 15 7 3.9352 -8.1623 3.7466 16 6 3.5195 -8.6862 4.9416 17 1 2.5198 -8.4890 5.2991 18 6 4.3829 -9.4718 5.6929 19 7 5.6013 -9.7126 5.2569 20 14 3.8157 -10.1870 7.3227 21 1 2.4146 -9.7707 7.5850 22 1 3.8899 -11.6691 7.2653 23 1 4.6920 -9.6894 8.4134 24 6 3.3621 -5.8341 2.9935 25 1 -0.3633 -0.0001 1.0277 26 1 -0.3633 0.8900 -0.5138 27 1 -0.3633 -0.8899 -0.5139 28 1 1.6958 -2.0073 -0.0005 29 1 5.2463 -0.4460 1.2476 30 1 3.7930 0.5813 1.2486 31 1 3.7933 -0.9604 2.1382 32 1 3.7918 -0.9593 -2.1402 33 1 3.7921 0.5820 -1.2499 34 1 5.2455 -0.4461 -1.2509 35 1 2.6612 -3.3151 1.1489 36 1 4.9594 -4.9558 1.1004 37 1 3.9969 -5.2957 -0.3577 38 1 1.9645 -5.5957 1.2905 39 1 4.4246 -7.4878 1.2476 40 1 2.7008 -7.8884 0.8360 41 1 1.9741 -7.5500 3.1520 42 1 4.8331 -8.3397 3.4254 43 1 6.2047 -10.2612 5.7820 44 1 2.6825 -5.2496 3.6135 45 1 4.4116 -5.6288 3.2044 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001100759944.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:54:36 Heat of formation + Delta-G solvation = -48.059366 kcal Electronic energy + Delta-G solvation = -24159.424343 eV Core-core repulsion = 20598.709593 eV Total energy + Delta-G solvation = -3560.714750 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.02781 -39.50178 -38.54075 -35.80996 -34.89780 -33.32760 -32.49516 -30.34151 -29.36036 -27.83140 -27.40648 -25.16898 -24.32625 -23.34303 -21.24792 -21.01581 -19.88127 -19.18052 -18.41602 -17.10673 -16.95070 -16.16560 -15.69536 -15.56186 -15.27104 -14.81293 -14.76786 -14.19111 -14.09856 -13.72216 -13.61022 -13.16588 -13.10421 -12.98924 -12.74993 -12.50442 -12.27061 -12.08452 -11.95736 -11.87576 -11.57188 -11.45049 -11.30062 -10.89100 -10.61263 -10.44974 -10.22662 -10.13484 -9.88616 -9.76140 -9.60795 -9.53002 -9.20178 -8.91718 -7.00763 -5.82306 -3.11496 2.16512 2.27779 2.82031 2.87306 3.39528 3.44989 3.47513 4.23306 4.42369 4.54416 4.65571 4.68334 4.79955 4.86737 4.92408 4.98634 5.13902 5.28979 5.39952 5.42227 5.43664 5.47187 5.50096 5.59642 5.72490 5.75496 5.85283 5.91158 6.00155 6.03310 6.03890 6.13509 6.22738 6.28207 6.34322 6.52141 6.74888 7.00917 7.04705 7.23266 7.65507 7.78092 7.94541 8.36162 9.47339 10.05226 10.39159 11.40086 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.024212 B = 0.002618 C = 0.002528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.179303 B =10691.973767 C =11071.932300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.517 3.483 3 O -0.537 6.537 4 N -0.728 5.728 5 C 0.160 3.840 6 C -0.161 4.161 7 C -0.149 4.149 8 C 0.513 3.487 9 O -0.526 6.526 10 N -0.722 5.722 11 C 0.130 3.870 12 C -0.128 4.128 13 C -0.141 4.141 14 C 0.166 3.834 15 N -0.713 5.713 16 C -0.244 4.244 17 H 0.072 0.928 18 C -0.013 4.013 19 N -0.931 5.931 20 Si 0.907 3.093 21 H -0.280 1.280 22 H -0.291 1.291 23 H -0.291 1.291 24 C -0.161 4.161 25 H 0.096 0.904 26 H 0.094 0.906 27 H 0.080 0.920 28 H 0.401 0.599 29 H 0.072 0.928 30 H 0.090 0.910 31 H 0.062 0.938 32 H 0.057 0.943 33 H 0.084 0.916 34 H 0.076 0.924 35 H 0.398 0.602 36 H 0.072 0.928 37 H 0.067 0.933 38 H 0.088 0.912 39 H 0.081 0.919 40 H 0.062 0.938 41 H 0.075 0.925 42 H 0.385 0.615 43 H 0.256 0.744 44 H 0.053 0.947 45 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.666 18.064 -12.569 24.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.304 3.696 3 O -0.414 6.414 4 N -0.384 5.384 5 C 0.071 3.929 6 C -0.219 4.219 7 C -0.208 4.208 8 C 0.297 3.703 9 O -0.400 6.400 10 N -0.374 5.374 11 C 0.007 3.993 12 C -0.147 4.147 13 C -0.181 4.181 14 C 0.054 3.946 15 N -0.351 5.351 16 C -0.376 4.376 17 H 0.089 0.911 18 C -0.209 4.209 19 N -0.579 5.579 20 Si 0.738 3.262 21 H -0.205 1.205 22 H -0.218 1.218 23 H -0.218 1.218 24 C -0.202 4.202 25 H 0.114 0.886 26 H 0.113 0.887 27 H 0.099 0.901 28 H 0.236 0.764 29 H 0.091 0.909 30 H 0.109 0.891 31 H 0.081 0.919 32 H 0.076 0.924 33 H 0.103 0.897 34 H 0.095 0.905 35 H 0.233 0.767 36 H 0.090 0.910 37 H 0.085 0.915 38 H 0.106 0.894 39 H 0.099 0.901 40 H 0.081 0.919 41 H 0.093 0.907 42 H 0.219 0.781 43 H 0.065 0.935 44 H 0.072 0.928 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -9.546 18.486 -12.825 24.441 hybrid contribution -0.571 -0.898 1.100 1.530 sum -10.118 17.589 -11.726 23.435 Atomic orbital electron populations 1.21917 0.91336 1.05071 1.05066 1.20807 0.90581 0.83215 0.74951 1.90679 1.70446 1.31373 1.48853 1.46303 1.06195 1.09305 1.76565 1.20616 0.80164 0.92909 0.99177 1.22187 1.02215 1.02660 0.94810 1.22042 1.02479 1.01582 0.94658 1.20470 0.84529 0.86378 0.78906 1.90747 1.24450 1.81732 1.43120 1.46153 1.29024 1.09465 1.52759 1.21518 0.98297 0.79040 1.00465 1.22696 0.98511 0.96269 0.97225 1.23427 1.01834 0.93118 0.99736 1.21514 0.94801 0.89272 0.89044 1.42422 1.13546 1.57845 1.21307 1.19334 0.97828 1.24274 0.96128 0.91052 1.24780 0.96132 1.00821 0.99187 1.69669 1.06195 1.43014 1.39068 0.86123 0.77683 0.78682 0.83719 1.20523 1.21813 1.21832 1.24008 1.01546 1.01962 0.92713 0.88559 0.88700 0.90074 0.76403 0.90865 0.89100 0.91928 0.92368 0.89708 0.90522 0.76744 0.90957 0.91499 0.89386 0.90051 0.91927 0.90748 0.78056 0.93455 0.92774 0.90308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.72 10.30 36.01 0.37 -0.34 16 2 C 0.52 4.07 7.36 -10.98 -0.08 3.98 16 3 O -0.54 -6.23 13.31 5.56 0.07 -6.15 16 4 N -0.73 -5.14 4.86 -48.68 -0.24 -5.38 16 5 C 0.16 1.55 0.98 -132.97 -0.13 1.42 16 6 C -0.16 -1.57 8.38 37.16 0.31 -1.26 16 7 C -0.15 -1.55 7.93 37.16 0.29 -1.26 16 8 C 0.51 5.98 6.65 -10.99 -0.07 5.91 16 9 O -0.53 -8.21 16.09 5.56 0.09 -8.12 16 10 N -0.72 -7.11 5.25 -60.29 -0.32 -7.42 16 11 C 0.13 1.54 5.51 -4.04 -0.02 1.51 16 12 C -0.13 -1.53 3.76 -89.67 -0.34 -1.87 16 13 C -0.14 -2.10 7.39 -25.92 -0.19 -2.30 16 14 C 0.17 3.05 4.47 -67.12 -0.30 2.75 16 15 N -0.71 -17.36 5.41 -52.64 -0.28 -17.65 16 16 C -0.24 -6.64 9.97 -15.06 -0.15 -6.79 16 17 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 18 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 19 N -0.93 -27.86 13.06 55.49 0.72 -27.14 16 20 Si 0.91 22.02 29.55 -169.99 -5.02 17.00 16 21 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 22 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 23 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 24 C -0.16 -2.50 7.45 -25.77 -0.19 -2.69 16 25 H 0.10 0.30 8.14 -51.93 -0.42 -0.13 16 26 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.08 0.18 8.14 -51.93 -0.42 -0.25 16 28 H 0.40 1.89 7.24 -40.82 -0.30 1.60 16 29 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.09 0.96 6.17 -51.93 -0.32 0.64 16 31 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 33 H 0.08 0.93 6.17 -51.93 -0.32 0.60 16 34 H 0.08 0.84 7.87 -51.93 -0.41 0.43 16 35 H 0.40 2.89 7.22 -40.82 -0.29 2.60 16 36 H 0.07 1.01 7.85 -51.93 -0.41 0.61 16 37 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 38 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 39 H 0.08 1.29 8.07 -51.93 -0.42 0.87 16 40 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 41 H 0.07 1.35 8.11 -51.93 -0.42 0.93 16 42 H 0.39 10.04 7.91 -40.82 -0.32 9.72 16 43 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 44 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 45 H 0.08 1.38 7.90 -51.93 -0.41 0.97 16 LS Contribution 366.56 15.07 5.52 5.52 Total: -1.00 -33.52 366.56 -7.44 -40.96 By element: Atomic # 1 Polarization: 17.15 SS G_CDS: -7.39 Total: 9.76 kcal Atomic # 6 Polarization: -0.79 SS G_CDS: -0.60 Total: -1.38 kcal Atomic # 7 Polarization: -57.47 SS G_CDS: -0.11 Total: -57.59 kcal Atomic # 8 Polarization: -14.43 SS G_CDS: 0.16 Total: -14.27 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -33.52 -7.44 -40.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100759944.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.097 kcal (2) G-P(sol) polarization free energy of solvation -33.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds