Wall clock time and date at job start Tue Mar 31 2020 03:54:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21272 * 120.00026 * 2 1 4 4 N 1.34785 * 119.99887 * 180.02562 * 2 1 3 5 5 C 1.46499 * 119.99971 * 179.97438 * 4 2 1 6 6 C 1.53006 * 109.46670 * 60.00382 * 5 4 2 7 7 C 1.52998 * 109.47316 * 300.00581 * 5 4 2 8 8 C 1.50697 * 109.46866 * 180.02562 * 5 4 2 9 9 O 1.21283 * 119.99626 * 145.00594 * 8 5 4 10 10 N 1.34772 * 120.00066 * 324.99707 * 8 5 4 11 11 C 1.46500 * 120.00059 * 180.02562 * 10 8 5 12 12 C 1.53002 * 109.47425 * 180.02562 * 11 10 8 13 13 C 1.53781 * 113.61609 * 175.00005 * 12 11 10 14 14 C 1.53781 * 87.08070 * 139.98229 * 13 12 11 15 15 N 1.46497 * 113.61305 * 219.93536 * 14 13 12 16 16 C 1.36944 * 119.99791 * 203.46713 * 15 14 13 17 17 H 1.07993 * 120.00042 * 0.02562 * 16 15 14 18 18 C 1.38812 * 119.99770 * 179.97438 * 16 15 14 19 19 N 1.31624 * 120.00274 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99962 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.46726 * 359.97438 * 20 18 16 22 22 H 1.48501 * 109.47021 * 120.00168 * 20 18 16 23 23 H 1.48502 * 109.47101 * 240.00261 * 20 18 16 24 24 C 1.53786 * 87.17350 * 334.52830 * 14 13 12 25 25 H 1.09006 * 109.46953 * 269.99539 * 1 2 3 26 26 H 1.08999 * 109.47003 * 29.99898 * 1 2 3 27 27 H 1.09000 * 109.47148 * 149.99674 * 1 2 3 28 28 H 0.97002 * 119.99638 * 359.97438 * 4 2 1 29 29 H 1.08997 * 109.46430 * 180.02562 * 6 5 4 30 30 H 1.09002 * 109.47004 * 299.99673 * 6 5 4 31 31 H 1.08994 * 109.47526 * 60.00009 * 6 5 4 32 32 H 1.09003 * 109.46561 * 299.99702 * 7 5 4 33 33 H 1.09002 * 109.47514 * 59.99619 * 7 5 4 34 34 H 1.08999 * 109.47026 * 180.02562 * 7 5 4 35 35 H 0.96996 * 120.00586 * 0.02562 * 10 8 5 36 36 H 1.08997 * 109.47114 * 60.00231 * 11 10 8 37 37 H 1.09006 * 109.47306 * 300.00712 * 11 10 8 38 38 H 1.08996 * 112.84723 * 43.80825 * 12 11 10 39 39 H 1.08999 * 113.61181 * 25.43284 * 13 12 11 40 40 H 1.08998 * 113.61680 * 254.52836 * 13 12 11 41 41 H 1.09002 * 113.61445 * 89.11830 * 14 13 12 42 42 H 0.96995 * 120.00146 * 23.47603 * 15 14 13 43 43 H 0.96996 * 120.00281 * 179.97438 * 19 18 16 44 44 H 1.08992 * 113.61675 * 140.02412 * 24 14 13 45 45 H 1.09000 * 113.60973 * 270.92699 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0502 0.0000 4 7 2.1809 -1.1673 -0.0005 5 6 3.6459 -1.1673 -0.0011 6 6 4.1563 -0.4464 1.2482 7 6 4.1555 -0.4457 -1.2503 8 6 4.1481 -2.5881 -0.0022 9 8 5.1613 -2.8726 -0.6052 10 7 3.4716 -3.5425 0.6669 11 6 3.9602 -4.9237 0.6662 12 6 3.0160 -5.7991 1.4928 13 6 3.3723 -7.2946 1.4562 14 6 3.0239 -7.3338 2.9535 15 7 3.9352 -8.1623 3.7466 16 6 3.5195 -8.6862 4.9416 17 1 2.5198 -8.4890 5.2991 18 6 4.3829 -9.4718 5.6929 19 7 5.6013 -9.7126 5.2569 20 14 3.8157 -10.1870 7.3227 21 1 2.4146 -9.7707 7.5850 22 1 3.8899 -11.6691 7.2653 23 1 4.6920 -9.6894 8.4134 24 6 3.3621 -5.8341 2.9935 25 1 -0.3633 -0.0001 1.0277 26 1 -0.3633 0.8900 -0.5138 27 1 -0.3633 -0.8899 -0.5139 28 1 1.6958 -2.0073 -0.0005 29 1 5.2463 -0.4460 1.2476 30 1 3.7930 0.5813 1.2486 31 1 3.7933 -0.9604 2.1382 32 1 3.7918 -0.9593 -2.1402 33 1 3.7921 0.5820 -1.2499 34 1 5.2455 -0.4461 -1.2509 35 1 2.6612 -3.3151 1.1489 36 1 4.9594 -4.9558 1.1004 37 1 3.9969 -5.2957 -0.3577 38 1 1.9645 -5.5957 1.2905 39 1 4.4246 -7.4878 1.2476 40 1 2.7008 -7.8884 0.8360 41 1 1.9741 -7.5500 3.1520 42 1 4.8331 -8.3397 3.4254 43 1 6.2047 -10.2612 5.7820 44 1 2.6825 -5.2496 3.6135 45 1 4.4116 -5.6288 3.2044 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001100759944.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:54:35 Heat of formation + Delta-G solvation = -73.260221 kcal Electronic energy + Delta-G solvation = -24160.517134 eV Core-core repulsion = 20598.709593 eV Total energy + Delta-G solvation = -3561.807541 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.85442 -40.40176 -39.73582 -36.62590 -36.15316 -35.02555 -33.16412 -32.17978 -29.80949 -29.00461 -28.30018 -26.44383 -25.99755 -24.49516 -22.41694 -21.89587 -20.78618 -20.35504 -19.33328 -18.93979 -17.69148 -17.21082 -16.75212 -16.38705 -16.24205 -16.18469 -15.90504 -15.44281 -15.11909 -14.94735 -14.74143 -14.55590 -14.05388 -13.53957 -13.44997 -13.36540 -13.22574 -13.21445 -13.03647 -12.99289 -12.91056 -12.77401 -12.64657 -12.35268 -12.16719 -12.05095 -11.63721 -11.54710 -11.22928 -11.03058 -10.81843 -10.53906 -10.30310 -10.17644 -8.96652 -7.94287 -5.22373 1.30873 1.47880 1.48319 1.58308 1.65724 1.95766 2.15047 2.57086 3.37377 3.43367 3.70614 3.74444 3.82761 3.87399 3.96128 3.97405 4.27614 4.36519 4.43001 4.51451 4.56797 4.60686 4.66335 4.69501 4.74011 4.75192 4.78298 4.98488 5.00604 5.06411 5.10946 5.15971 5.16444 5.22793 5.29917 5.33584 5.42104 5.53665 5.75154 6.28498 6.36437 6.50495 7.04153 7.23493 7.33862 8.13029 8.33661 9.29544 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.024212 B = 0.002618 C = 0.002528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.179303 B =10691.973767 C =11071.932300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.513 3.487 3 O -0.579 6.579 4 N -0.716 5.716 5 C 0.167 3.833 6 C -0.157 4.157 7 C -0.145 4.145 8 C 0.516 3.484 9 O -0.568 6.568 10 N -0.706 5.706 11 C 0.135 3.865 12 C -0.093 4.093 13 C -0.137 4.137 14 C 0.141 3.859 15 N -0.732 5.732 16 C -0.238 4.238 17 H 0.080 0.920 18 C -0.081 4.081 19 N -0.973 5.973 20 Si 0.971 3.029 21 H -0.262 1.262 22 H -0.295 1.295 23 H -0.297 1.297 24 C -0.155 4.155 25 H 0.111 0.889 26 H 0.093 0.907 27 H 0.106 0.894 28 H 0.415 0.585 29 H 0.065 0.935 30 H 0.083 0.917 31 H 0.071 0.929 32 H 0.058 0.942 33 H 0.079 0.921 34 H 0.065 0.935 35 H 0.415 0.585 36 H 0.046 0.954 37 H 0.071 0.929 38 H 0.129 0.871 39 H 0.065 0.935 40 H 0.081 0.919 41 H 0.082 0.918 42 H 0.371 0.629 43 H 0.250 0.750 44 H 0.069 0.931 45 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.810 18.711 -12.823 26.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.302 3.698 3 O -0.458 6.458 4 N -0.373 5.373 5 C 0.077 3.923 6 C -0.215 4.215 7 C -0.203 4.203 8 C 0.301 3.699 9 O -0.446 6.446 10 N -0.358 5.358 11 C 0.012 3.988 12 C -0.112 4.112 13 C -0.176 4.176 14 C 0.032 3.968 15 N -0.369 5.369 16 C -0.370 4.370 17 H 0.098 0.902 18 C -0.273 4.273 19 N -0.624 5.624 20 Si 0.801 3.199 21 H -0.186 1.186 22 H -0.223 1.223 23 H -0.224 1.224 24 C -0.196 4.196 25 H 0.130 0.870 26 H 0.112 0.888 27 H 0.125 0.875 28 H 0.253 0.747 29 H 0.084 0.916 30 H 0.102 0.898 31 H 0.090 0.910 32 H 0.077 0.923 33 H 0.098 0.902 34 H 0.084 0.916 35 H 0.252 0.748 36 H 0.065 0.935 37 H 0.090 0.910 38 H 0.147 0.853 39 H 0.083 0.917 40 H 0.099 0.901 41 H 0.100 0.900 42 H 0.203 0.797 43 H 0.058 0.942 44 H 0.088 0.912 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -12.799 19.153 -13.087 26.494 hybrid contribution 0.364 -1.051 1.119 1.578 sum -12.435 18.102 -11.968 25.011 Atomic orbital electron populations 1.21938 0.87915 1.06323 1.06401 1.21549 0.92101 0.82462 0.73656 1.90671 1.71557 1.32852 1.50746 1.46179 1.04851 1.10131 1.76168 1.20387 0.81880 0.91313 0.98714 1.22140 1.01791 1.02365 0.95197 1.21973 1.01817 1.01363 0.95181 1.20726 0.83873 0.87094 0.78204 1.90736 1.26354 1.82460 1.45029 1.45947 1.29246 1.08411 1.52191 1.21317 0.97121 0.79979 1.00404 1.22536 1.00525 0.93976 0.94166 1.23311 1.01393 0.95701 0.97205 1.21990 0.94160 0.90034 0.90596 1.42667 1.13882 1.58955 1.21401 1.19767 0.97808 1.22713 0.96747 0.90176 1.25593 0.96469 1.02402 1.02837 1.69829 1.07495 1.44610 1.40491 0.85094 0.77883 0.77378 0.79558 1.18622 1.22264 1.22438 1.23782 1.00405 0.99563 0.95818 0.87022 0.88810 0.87490 0.74685 0.91633 0.89792 0.91023 0.92287 0.90235 0.91625 0.74770 0.93515 0.91033 0.85328 0.91681 0.90069 0.90023 0.79728 0.94168 0.91240 0.92889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.80 10.30 71.24 0.73 -0.07 16 2 C 0.51 6.93 7.36 87.66 0.65 7.58 16 3 O -0.58 -12.90 13.31 -3.01 -0.04 -12.94 16 4 N -0.72 -8.28 4.86 -426.32 -2.07 -10.35 16 5 C 0.17 3.03 0.98 2.86 0.00 3.03 16 6 C -0.16 -2.95 8.38 71.98 0.60 -2.34 16 7 C -0.14 -2.98 7.93 71.98 0.57 -2.41 16 8 C 0.52 11.30 6.65 87.66 0.58 11.88 16 9 O -0.57 -17.56 16.09 -3.04 -0.05 -17.61 16 10 N -0.71 -11.97 5.25 -463.06 -2.43 -14.41 16 11 C 0.14 2.91 5.51 86.38 0.48 3.39 16 12 C -0.09 -1.92 3.76 -10.18 -0.04 -1.95 16 13 C -0.14 -3.79 7.39 31.12 0.23 -3.56 16 14 C 0.14 4.99 4.47 45.52 0.20 5.19 16 15 N -0.73 -35.78 5.41 -320.44 -1.73 -37.51 16 16 C -0.24 -12.89 9.97 84.03 0.84 -12.05 16 17 H 0.08 4.09 7.83 -2.91 -0.02 4.07 16 18 C -0.08 -4.62 5.50 84.86 0.47 -4.15 16 19 N -0.97 -59.70 13.06 21.65 0.28 -59.41 16 20 Si 0.97 45.53 29.55 68.60 2.03 47.56 16 21 H -0.26 -11.34 7.11 99.48 0.71 -10.63 16 22 H -0.30 -13.90 7.11 99.48 0.71 -13.20 16 23 H -0.30 -14.05 7.11 99.48 0.71 -13.34 16 24 C -0.16 -4.49 7.45 31.21 0.23 -4.26 16 25 H 0.11 0.26 8.14 -2.38 -0.02 0.24 16 26 H 0.09 0.54 8.14 -2.39 -0.02 0.52 16 27 H 0.11 -0.02 8.14 -2.39 -0.02 -0.04 16 28 H 0.42 2.33 7.24 -92.71 -0.67 1.65 16 29 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 30 H 0.08 1.75 6.17 -2.39 -0.01 1.73 16 31 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.08 1.74 6.17 -2.39 -0.01 1.72 16 34 H 0.06 1.47 7.87 -2.39 -0.02 1.45 16 35 H 0.41 4.33 7.22 -92.71 -0.67 3.66 16 36 H 0.05 1.29 7.85 -2.39 -0.02 1.27 16 37 H 0.07 1.55 8.14 -2.38 -0.02 1.53 16 38 H 0.13 1.75 8.14 -2.39 -0.02 1.73 16 39 H 0.06 2.04 8.07 -2.39 -0.02 2.02 16 40 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 41 H 0.08 2.76 8.11 -2.39 -0.02 2.74 16 42 H 0.37 19.90 7.91 -92.71 -0.73 19.16 16 43 H 0.25 14.87 8.31 -92.71 -0.77 14.10 16 44 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 45 H 0.05 1.83 7.90 -2.39 -0.02 1.81 16 Total: -1.00 -75.30 366.56 0.47 -74.83 By element: Atomic # 1 Polarization: 30.64 SS G_CDS: -1.06 Total: 29.57 kcal Atomic # 6 Polarization: -5.28 SS G_CDS: 5.55 Total: 0.27 kcal Atomic # 7 Polarization: -115.73 SS G_CDS: -5.95 Total: -121.68 kcal Atomic # 8 Polarization: -30.46 SS G_CDS: -0.09 Total: -30.55 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 2.03 Total: 47.56 kcal Total: -75.30 0.47 -74.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100759944.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.570 kcal (2) G-P(sol) polarization free energy of solvation -75.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds