Wall clock time and date at job start Tue Mar 31 2020 03:53:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 O 1.21285 * 119.99626 * 2 1 4 4 N 1.34776 * 120.00162 * 180.02562 * 2 1 3 5 5 C 1.46502 * 119.99759 * 179.97438 * 4 2 1 6 6 C 1.53003 * 109.46805 * 174.35728 * 5 4 2 7 7 N 1.46900 * 109.46827 * 305.31678 * 6 5 4 8 8 C 1.46898 * 111.00039 * 305.20816 * 7 6 5 9 9 C 1.50707 * 109.47034 * 185.17740 * 8 7 6 10 10 O 1.21284 * 119.99962 * 359.97438 * 9 8 7 11 11 N 1.34778 * 119.99659 * 180.27680 * 9 8 7 12 12 C 1.37098 * 119.99765 * 179.72334 * 11 9 8 13 13 H 1.07993 * 119.99989 * 359.97438 * 12 11 9 14 14 C 1.38945 * 119.99658 * 179.97438 * 12 11 9 15 15 N 1.31417 * 119.99872 * 179.97438 * 14 12 11 16 16 Si 1.86801 * 120.00248 * 0.02562 * 14 12 11 17 17 H 1.48496 * 109.47126 * 89.99987 * 16 14 12 18 18 H 1.48503 * 109.46786 * 209.99978 * 16 14 12 19 19 H 1.48500 * 109.47267 * 329.99924 * 16 14 12 20 20 C 1.53004 * 109.46902 * 65.31331 * 6 5 4 21 21 C 1.53003 * 109.46902 * 179.97438 * 20 6 5 22 22 C 1.53004 * 109.47020 * 300.00463 * 21 20 6 23 23 C 1.52997 * 109.47205 * 59.99926 * 22 21 20 24 24 C 1.52991 * 109.47333 * 185.31480 * 6 5 4 25 25 H 1.08999 * 109.46865 * 270.00196 * 1 2 3 26 26 H 1.09002 * 109.47143 * 29.99689 * 1 2 3 27 27 H 1.09000 * 109.47274 * 150.00260 * 1 2 3 28 28 H 0.97004 * 119.99506 * 359.97438 * 4 2 1 29 29 H 1.08991 * 109.47003 * 54.35945 * 5 4 2 30 30 H 1.08995 * 109.46951 * 294.35388 * 5 4 2 31 31 H 1.00905 * 111.00258 * 69.16701 * 7 6 5 32 32 H 1.09003 * 109.47157 * 65.17904 * 8 7 6 33 33 H 1.09000 * 109.46886 * 305.17537 * 8 7 6 34 34 H 0.96998 * 119.99975 * 359.72487 * 11 9 8 35 35 H 0.97003 * 120.00126 * 179.97438 * 15 14 12 36 36 H 1.08999 * 109.47359 * 300.00003 * 20 6 5 37 37 H 1.09000 * 109.47107 * 60.00298 * 20 6 5 38 38 H 1.09000 * 109.47438 * 180.02562 * 21 20 6 39 39 H 1.09007 * 109.47176 * 59.99830 * 21 20 6 40 40 H 1.09000 * 109.47045 * 299.99737 * 22 21 20 41 41 H 1.09003 * 109.46798 * 179.97438 * 22 21 20 42 42 H 1.09007 * 109.46786 * 180.02562 * 23 22 21 43 43 H 1.08993 * 109.47459 * 60.00225 * 23 22 21 44 44 H 1.09000 * 109.47146 * 299.99990 * 24 6 5 45 45 H 1.09000 * 109.46961 * 59.99582 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.6460 -1.1671 -0.0011 6 6 4.1561 -2.6026 0.1402 7 7 3.5648 -3.2167 1.3366 8 6 3.8231 -2.4000 2.5299 9 6 3.3148 -3.1209 3.7518 10 8 2.7886 -4.2079 3.6395 11 7 3.4393 -2.5550 4.9687 12 6 2.9717 -3.2083 6.0796 13 1 2.5033 -4.1762 5.9796 14 6 3.1007 -2.6251 7.3341 15 7 2.6520 -3.2511 8.3989 16 14 3.9104 -0.9506 7.5070 17 1 2.8793 0.1120 7.3931 18 1 4.5742 -0.8563 8.8320 19 1 4.9214 -0.7764 6.4333 20 6 3.7575 -3.4096 -1.0971 21 6 4.2682 -4.8449 -0.9561 22 6 5.7924 -4.8333 -0.8238 23 6 6.1908 -4.0264 0.4135 24 6 5.6802 -2.5916 0.2728 25 1 -0.3633 0.0000 1.0277 26 1 -0.3633 0.8900 -0.5138 27 1 -0.3634 -0.8900 -0.5138 28 1 1.6959 -2.0072 -0.0005 29 1 4.0095 -0.5685 0.8340 30 1 4.0089 -0.7431 -0.9373 31 1 2.5757 -3.3723 1.2120 32 1 3.3104 -1.4429 2.4331 33 1 4.8952 -2.2295 2.6284 34 1 3.8598 -1.6855 5.0584 35 1 2.7423 -2.8441 9.2748 36 1 2.6717 -3.4174 -1.1916 37 1 4.1962 -2.9539 -1.9848 38 1 3.9847 -5.4198 -1.8378 39 1 3.8300 -5.3009 -0.0683 40 1 6.2307 -4.3773 -1.7116 41 1 6.1562 -5.8559 -0.7229 42 1 7.2768 -4.0177 0.5075 43 1 5.7526 -4.4823 1.3013 44 1 6.1188 -2.1359 -0.6149 45 1 5.9640 -2.0167 1.1543 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001115372231.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:53:42 Heat of formation + Delta-G solvation = -82.796594 kcal Electronic energy + Delta-G solvation = -25443.330619 eV Core-core repulsion = 21881.109550 eV Total energy + Delta-G solvation = -3562.221069 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.50351 -39.05774 -38.09758 -35.26242 -34.08274 -33.40658 -31.66555 -30.98405 -30.70288 -29.50645 -26.58453 -25.61296 -23.94836 -22.70443 -21.06359 -20.60633 -19.37346 -18.96140 -18.35266 -17.20143 -16.38271 -16.21313 -15.70813 -15.38743 -15.09857 -14.80130 -14.38943 -14.30488 -13.97958 -13.60335 -13.56708 -13.18913 -13.12895 -12.84710 -12.57950 -12.31296 -12.24992 -12.19151 -12.14219 -11.78871 -11.68062 -11.51177 -11.16412 -11.01025 -10.59200 -10.51351 -10.28440 -10.03123 -9.98020 -9.97551 -9.56722 -9.25199 -8.61963 -8.19150 -8.13180 -6.31461 -3.82738 2.51827 3.03397 3.05092 3.07812 3.15788 3.74583 4.00470 4.10683 4.47145 4.50079 4.68864 4.74553 4.88738 5.03126 5.11425 5.14526 5.20940 5.24268 5.27681 5.41241 5.45039 5.50505 5.54052 5.57359 5.63702 5.67624 5.75189 5.84994 5.87719 5.89671 5.98846 6.15811 6.21782 6.26042 6.28493 6.38112 6.62098 7.04902 7.29986 7.47971 7.58037 8.06831 8.14220 8.59693 8.94895 9.42638 9.83015 10.81636 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.012169 B = 0.004999 C = 0.004025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2300.342363 B = 5599.275603 C = 6954.009215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.511 3.489 3 O -0.549 6.549 4 N -0.728 5.728 5 C 0.086 3.914 6 C 0.106 3.894 7 N -0.643 5.643 8 C 0.042 3.958 9 C 0.452 3.548 10 O -0.564 6.564 11 N -0.591 5.591 12 C -0.304 4.304 13 H 0.120 0.880 14 C 0.042 3.958 15 N -0.882 5.882 16 Si 0.878 3.122 17 H -0.271 1.271 18 H -0.276 1.276 19 H -0.269 1.269 20 C -0.103 4.103 21 C -0.114 4.114 22 C -0.113 4.113 23 C -0.113 4.113 24 C -0.101 4.101 25 H 0.096 0.904 26 H 0.092 0.908 27 H 0.079 0.921 28 H 0.399 0.601 29 H 0.073 0.927 30 H 0.068 0.932 31 H 0.344 0.656 32 H 0.046 0.954 33 H 0.089 0.911 34 H 0.370 0.630 35 H 0.273 0.727 36 H 0.058 0.942 37 H 0.066 0.934 38 H 0.053 0.947 39 H 0.082 0.918 40 H 0.051 0.949 41 H 0.058 0.942 42 H 0.053 0.947 43 H 0.083 0.917 44 H 0.063 0.937 45 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.376 3.517 -20.351 20.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.298 3.702 3 O -0.427 6.427 4 N -0.382 5.382 5 C -0.040 4.040 6 C 0.014 3.986 7 N -0.275 5.275 8 C -0.091 4.091 9 C 0.238 3.762 10 O -0.445 6.445 11 N -0.231 5.231 12 C -0.433 4.433 13 H 0.137 0.863 14 C -0.161 4.161 15 N -0.522 5.522 16 Si 0.704 3.296 17 H -0.197 1.197 18 H -0.201 1.201 19 H -0.195 1.195 20 C -0.141 4.141 21 C -0.152 4.152 22 C -0.151 4.151 23 C -0.150 4.150 24 C -0.140 4.140 25 H 0.115 0.885 26 H 0.110 0.890 27 H 0.098 0.902 28 H 0.235 0.765 29 H 0.092 0.908 30 H 0.086 0.914 31 H 0.164 0.836 32 H 0.064 0.936 33 H 0.107 0.893 34 H 0.202 0.798 35 H 0.084 0.916 36 H 0.077 0.923 37 H 0.084 0.916 38 H 0.071 0.929 39 H 0.100 0.900 40 H 0.070 0.930 41 H 0.076 0.924 42 H 0.072 0.928 43 H 0.102 0.898 44 H 0.082 0.918 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 2.946 3.097 -20.068 20.518 hybrid contribution -0.197 1.786 0.291 1.820 sum 2.749 4.883 -19.777 20.556 Atomic orbital electron populations 1.21896 0.91618 1.04708 1.05152 1.20823 0.90672 0.83374 0.75299 1.90720 1.70905 1.31414 1.49661 1.46089 1.07450 1.08877 1.75777 1.22167 0.80063 0.99122 1.02663 1.21276 0.96019 0.89947 0.91404 1.60216 1.19824 1.47307 1.00130 1.21807 1.01883 0.94768 0.90642 1.19683 0.85158 0.87652 0.83724 1.90557 1.46978 1.21394 1.85620 1.42221 1.54819 1.19298 1.06761 1.19414 1.35818 1.05056 0.82997 0.86287 1.25023 0.97677 0.98200 0.95170 1.69622 1.45658 1.38278 0.98613 0.86701 0.79930 0.84368 0.78583 1.19660 1.20140 1.19503 1.21556 1.00252 0.96390 0.95876 1.21449 0.95884 0.95608 1.02232 1.21460 0.95998 0.99839 0.97766 1.21406 0.99359 0.94690 0.99592 1.21494 0.92560 0.98252 1.01668 0.88539 0.88964 0.90172 0.76521 0.90835 0.91422 0.83573 0.93572 0.89254 0.79775 0.91630 0.92323 0.91573 0.92862 0.89957 0.92983 0.92362 0.92807 0.89809 0.91808 0.91695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.44 10.30 36.01 0.37 -1.07 16 2 C 0.51 6.16 7.94 -10.98 -0.09 6.07 16 3 O -0.55 -9.02 17.09 5.55 0.09 -8.93 16 4 N -0.73 -7.52 5.04 -60.29 -0.30 -7.82 16 5 C 0.09 0.93 3.87 -4.04 -0.02 0.92 16 6 C 0.11 1.09 0.30 -131.60 -0.04 1.06 16 7 N -0.64 -8.59 4.02 -101.22 -0.41 -9.00 16 8 C 0.04 0.66 5.28 -4.97 -0.03 0.63 16 9 C 0.45 9.93 7.83 -10.98 -0.09 9.85 16 10 O -0.56 -14.51 15.89 5.55 0.09 -14.42 16 11 N -0.59 -13.99 5.09 -10.96 -0.06 -14.05 16 12 C -0.30 -8.55 10.16 -14.93 -0.15 -8.71 16 13 H 0.12 3.82 7.39 -52.49 -0.39 3.43 16 14 C 0.04 1.16 5.50 -17.47 -0.10 1.06 16 15 N -0.88 -25.75 13.96 55.50 0.77 -24.98 16 16 Si 0.88 19.61 27.74 -169.99 -4.71 14.90 16 17 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 18 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 19 H -0.27 -5.54 6.52 56.52 0.37 -5.17 16 20 C -0.10 -0.92 4.67 -26.73 -0.12 -1.04 16 21 C -0.11 -1.12 5.77 -26.73 -0.15 -1.27 16 22 C -0.11 -1.10 5.92 -26.73 -0.16 -1.26 16 23 C -0.11 -1.24 5.76 -26.76 -0.15 -1.39 16 24 C -0.10 -1.05 4.50 -26.77 -0.12 -1.17 16 25 H 0.10 0.79 8.14 -51.93 -0.42 0.36 16 26 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.40 3.42 6.40 -40.82 -0.26 3.16 16 29 H 0.07 0.94 6.76 -51.93 -0.35 0.59 16 30 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.34 4.65 7.28 -39.29 -0.29 4.36 16 32 H 0.05 0.70 6.60 -51.93 -0.34 0.36 16 33 H 0.09 1.32 6.22 -51.93 -0.32 1.00 16 34 H 0.37 7.84 5.76 -40.82 -0.24 7.61 16 35 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 36 H 0.06 0.48 7.09 -51.93 -0.37 0.11 16 37 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.08 0.99 7.60 -51.93 -0.39 0.60 16 40 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.08 1.16 7.60 -51.93 -0.39 0.77 16 44 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 45 H 0.06 0.71 6.42 -51.93 -0.33 0.37 16 LS Contribution 352.21 15.07 5.31 5.31 Total: -1.00 -33.68 352.21 -7.13 -40.81 By element: Atomic # 1 Polarization: 21.56 SS G_CDS: -7.07 Total: 14.48 kcal Atomic # 6 Polarization: 4.53 SS G_CDS: -0.84 Total: 3.68 kcal Atomic # 7 Polarization: -55.85 SS G_CDS: 0.01 Total: -55.84 kcal Atomic # 8 Polarization: -23.53 SS G_CDS: 0.18 Total: -23.35 kcal Atomic # 14 Polarization: 19.61 SS G_CDS: -4.71 Total: 14.90 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -33.68 -7.13 -40.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001115372231.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.984 kcal (2) G-P(sol) polarization free energy of solvation -33.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds