Wall clock time and date at job start Tue Mar 31 2020 03:53:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 O 1.21285 * 119.99626 * 2 1 4 4 N 1.34776 * 120.00162 * 180.02562 * 2 1 3 5 5 C 1.46502 * 119.99759 * 179.97438 * 4 2 1 6 6 C 1.53003 * 109.46805 * 174.35728 * 5 4 2 7 7 N 1.46900 * 109.46827 * 305.31678 * 6 5 4 8 8 C 1.46898 * 111.00039 * 305.20816 * 7 6 5 9 9 C 1.50707 * 109.47034 * 185.17740 * 8 7 6 10 10 O 1.21284 * 119.99962 * 359.97438 * 9 8 7 11 11 N 1.34778 * 119.99659 * 180.27680 * 9 8 7 12 12 C 1.37098 * 119.99765 * 179.72334 * 11 9 8 13 13 H 1.07993 * 119.99989 * 359.97438 * 12 11 9 14 14 C 1.38945 * 119.99658 * 179.97438 * 12 11 9 15 15 N 1.31417 * 119.99872 * 179.97438 * 14 12 11 16 16 Si 1.86801 * 120.00248 * 0.02562 * 14 12 11 17 17 H 1.48496 * 109.47126 * 89.99987 * 16 14 12 18 18 H 1.48503 * 109.46786 * 209.99978 * 16 14 12 19 19 H 1.48500 * 109.47267 * 329.99924 * 16 14 12 20 20 C 1.53004 * 109.46902 * 65.31331 * 6 5 4 21 21 C 1.53003 * 109.46902 * 179.97438 * 20 6 5 22 22 C 1.53004 * 109.47020 * 300.00463 * 21 20 6 23 23 C 1.52997 * 109.47205 * 59.99926 * 22 21 20 24 24 C 1.52991 * 109.47333 * 185.31480 * 6 5 4 25 25 H 1.08999 * 109.46865 * 270.00196 * 1 2 3 26 26 H 1.09002 * 109.47143 * 29.99689 * 1 2 3 27 27 H 1.09000 * 109.47274 * 150.00260 * 1 2 3 28 28 H 0.97004 * 119.99506 * 359.97438 * 4 2 1 29 29 H 1.08991 * 109.47003 * 54.35945 * 5 4 2 30 30 H 1.08995 * 109.46951 * 294.35388 * 5 4 2 31 31 H 1.00905 * 111.00258 * 69.16701 * 7 6 5 32 32 H 1.09003 * 109.47157 * 65.17904 * 8 7 6 33 33 H 1.09000 * 109.46886 * 305.17537 * 8 7 6 34 34 H 0.96998 * 119.99975 * 359.72487 * 11 9 8 35 35 H 0.97003 * 120.00126 * 179.97438 * 15 14 12 36 36 H 1.08999 * 109.47359 * 300.00003 * 20 6 5 37 37 H 1.09000 * 109.47107 * 60.00298 * 20 6 5 38 38 H 1.09000 * 109.47438 * 180.02562 * 21 20 6 39 39 H 1.09007 * 109.47176 * 59.99830 * 21 20 6 40 40 H 1.09000 * 109.47045 * 299.99737 * 22 21 20 41 41 H 1.09003 * 109.46798 * 179.97438 * 22 21 20 42 42 H 1.09007 * 109.46786 * 180.02562 * 23 22 21 43 43 H 1.08993 * 109.47459 * 60.00225 * 23 22 21 44 44 H 1.09000 * 109.47146 * 299.99990 * 24 6 5 45 45 H 1.09000 * 109.46961 * 59.99582 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.6460 -1.1671 -0.0011 6 6 4.1561 -2.6026 0.1402 7 7 3.5648 -3.2167 1.3366 8 6 3.8231 -2.4000 2.5299 9 6 3.3148 -3.1209 3.7518 10 8 2.7886 -4.2079 3.6395 11 7 3.4393 -2.5550 4.9687 12 6 2.9717 -3.2083 6.0796 13 1 2.5033 -4.1762 5.9796 14 6 3.1007 -2.6251 7.3341 15 7 2.6520 -3.2511 8.3989 16 14 3.9104 -0.9506 7.5070 17 1 2.8793 0.1120 7.3931 18 1 4.5742 -0.8563 8.8320 19 1 4.9214 -0.7764 6.4333 20 6 3.7575 -3.4096 -1.0971 21 6 4.2682 -4.8449 -0.9561 22 6 5.7924 -4.8333 -0.8238 23 6 6.1908 -4.0264 0.4135 24 6 5.6802 -2.5916 0.2728 25 1 -0.3633 0.0000 1.0277 26 1 -0.3633 0.8900 -0.5138 27 1 -0.3634 -0.8900 -0.5138 28 1 1.6959 -2.0072 -0.0005 29 1 4.0095 -0.5685 0.8340 30 1 4.0089 -0.7431 -0.9373 31 1 2.5757 -3.3723 1.2120 32 1 3.3104 -1.4429 2.4331 33 1 4.8952 -2.2295 2.6284 34 1 3.8598 -1.6855 5.0584 35 1 2.7423 -2.8441 9.2748 36 1 2.6717 -3.4174 -1.1916 37 1 4.1962 -2.9539 -1.9848 38 1 3.9847 -5.4198 -1.8378 39 1 3.8300 -5.3009 -0.0683 40 1 6.2307 -4.3773 -1.7116 41 1 6.1562 -5.8559 -0.7229 42 1 7.2768 -4.0177 0.5075 43 1 5.7526 -4.4823 1.3013 44 1 6.1188 -2.1359 -0.6149 45 1 5.9640 -2.0167 1.1543 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001115372231.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:53:42 Heat of formation + Delta-G solvation = -108.913829 kcal Electronic energy + Delta-G solvation = -25444.463147 eV Core-core repulsion = 21881.109550 eV Total energy + Delta-G solvation = -3563.353598 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.47615 -40.24006 -39.65567 -36.26411 -35.95073 -34.57062 -33.72807 -31.88456 -31.57463 -30.32961 -28.14372 -26.45717 -25.64115 -23.58365 -21.92554 -21.52465 -21.23383 -20.26934 -19.86647 -18.09098 -17.82883 -17.17191 -17.04009 -16.72929 -16.33620 -16.02632 -15.74499 -15.33310 -15.07365 -14.98234 -14.61708 -14.53582 -14.26561 -14.11057 -14.01135 -13.48226 -13.28155 -13.05178 -13.01270 -12.97260 -12.70732 -12.64685 -12.54918 -12.42974 -12.00720 -11.83910 -11.52410 -11.34676 -11.14377 -10.93356 -10.81342 -10.43159 -10.24829 -10.15896 -9.30229 -8.42412 -6.02186 1.27888 1.31975 1.40437 1.60691 1.95459 2.19995 2.21630 2.70310 3.14194 3.36759 3.64518 3.71642 3.92455 3.93943 4.11492 4.28682 4.34420 4.34762 4.44219 4.46693 4.50802 4.60277 4.62075 4.67781 4.72761 4.78096 4.82418 5.00776 5.04997 5.09003 5.16617 5.32982 5.41804 5.43570 5.47733 5.51144 5.52361 5.75693 5.91161 6.04549 6.39691 6.47551 6.58885 6.87821 7.19218 7.39574 7.95564 8.75095 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.012169 B = 0.004999 C = 0.004025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2300.342363 B = 5599.275603 C = 6954.009215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.505 3.495 3 O -0.598 6.598 4 N -0.720 5.720 5 C 0.089 3.911 6 C 0.114 3.886 7 N -0.650 5.650 8 C 0.061 3.939 9 C 0.454 3.546 10 O -0.605 6.605 11 N -0.595 5.595 12 C -0.324 4.324 13 H 0.059 0.941 14 C -0.011 4.011 15 N -0.933 5.933 16 Si 0.957 3.043 17 H -0.260 1.260 18 H -0.273 1.273 19 H -0.236 1.236 20 C -0.099 4.099 21 C -0.112 4.112 22 C -0.111 4.111 23 C -0.111 4.111 24 C -0.103 4.103 25 H 0.098 0.902 26 H 0.096 0.904 27 H 0.107 0.893 28 H 0.409 0.591 29 H 0.057 0.943 30 H 0.076 0.924 31 H 0.343 0.657 32 H 0.061 0.939 33 H 0.107 0.893 34 H 0.386 0.614 35 H 0.279 0.721 36 H 0.068 0.932 37 H 0.085 0.915 38 H 0.067 0.933 39 H 0.053 0.947 40 H 0.071 0.929 41 H 0.054 0.946 42 H 0.060 0.940 43 H 0.048 0.952 44 H 0.086 0.914 45 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.417 5.572 -22.741 23.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.294 3.706 3 O -0.479 6.479 4 N -0.373 5.373 5 C -0.037 4.037 6 C 0.023 3.977 7 N -0.283 5.283 8 C -0.071 4.071 9 C 0.242 3.758 10 O -0.489 6.489 11 N -0.237 5.237 12 C -0.453 4.453 13 H 0.078 0.922 14 C -0.210 4.210 15 N -0.574 5.574 16 Si 0.778 3.222 17 H -0.184 1.184 18 H -0.198 1.198 19 H -0.160 1.160 20 C -0.136 4.136 21 C -0.150 4.150 22 C -0.149 4.149 23 C -0.149 4.149 24 C -0.141 4.141 25 H 0.117 0.883 26 H 0.115 0.885 27 H 0.126 0.874 28 H 0.246 0.754 29 H 0.076 0.924 30 H 0.094 0.906 31 H 0.163 0.837 32 H 0.079 0.921 33 H 0.125 0.875 34 H 0.221 0.779 35 H 0.088 0.912 36 H 0.087 0.913 37 H 0.103 0.897 38 H 0.086 0.914 39 H 0.072 0.928 40 H 0.089 0.911 41 H 0.072 0.928 42 H 0.079 0.921 43 H 0.067 0.933 44 H 0.104 0.896 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 3.986 5.121 -22.493 23.411 hybrid contribution -0.561 0.976 0.972 1.487 sum 3.425 6.096 -21.522 22.629 Atomic orbital electron populations 1.21921 0.88806 1.06375 1.05746 1.21479 0.92106 0.82846 0.74170 1.90697 1.72101 1.33062 1.52064 1.46071 1.07389 1.09066 1.74765 1.22105 0.80364 0.98778 1.02425 1.21306 0.95991 0.89819 0.90593 1.60197 1.20017 1.47559 1.00520 1.21604 1.02589 0.94382 0.88540 1.20861 0.83049 0.87085 0.84832 1.90539 1.48312 1.23552 1.86486 1.42085 1.55514 1.19900 1.06176 1.19002 1.37169 1.03809 0.85364 0.92246 1.25999 0.97848 1.03209 0.93952 1.69792 1.47176 1.40897 0.99496 0.85467 0.79554 0.77630 0.79549 1.18414 1.19830 1.16001 1.21561 1.01098 0.95471 0.95499 1.21405 0.95831 0.96243 1.01516 1.21456 0.95998 0.99622 0.97804 1.21352 0.99614 0.95167 0.98764 1.21539 0.92330 0.97702 1.02517 0.88304 0.88517 0.87392 0.75353 0.92425 0.90620 0.83683 0.92096 0.87496 0.77924 0.91184 0.91302 0.89672 0.91446 0.92824 0.91056 0.92760 0.92090 0.93294 0.89556 0.92268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.41 10.30 71.24 0.73 -1.67 16 2 C 0.50 11.23 7.94 87.66 0.70 11.92 16 3 O -0.60 -18.95 17.09 -3.05 -0.05 -19.00 16 4 N -0.72 -13.17 5.04 -463.06 -2.33 -15.51 16 5 C 0.09 1.72 3.87 86.38 0.33 2.05 16 6 C 0.11 2.10 0.30 3.53 0.00 2.10 16 7 N -0.65 -16.65 4.02 -474.14 -1.90 -18.55 16 8 C 0.06 1.86 5.28 85.56 0.45 2.31 16 9 C 0.45 20.11 7.83 87.66 0.69 20.79 16 10 O -0.61 -32.28 15.89 -3.04 -0.05 -32.33 16 11 N -0.60 -28.24 5.09 -306.99 -1.56 -29.80 16 12 C -0.32 -18.96 10.16 84.04 0.85 -18.10 16 13 H 0.06 4.11 7.39 -2.91 -0.02 4.08 16 14 C -0.01 -0.63 5.50 84.92 0.47 -0.16 16 15 N -0.93 -56.31 13.96 21.66 0.30 -56.01 16 16 Si 0.96 39.74 27.74 68.60 1.90 41.64 16 17 H -0.26 -10.31 7.11 99.48 0.71 -9.61 16 18 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 19 H -0.24 -8.47 6.52 99.48 0.65 -7.83 16 20 C -0.10 -1.46 4.67 30.60 0.14 -1.32 16 21 C -0.11 -1.98 5.77 30.60 0.18 -1.80 16 22 C -0.11 -1.93 5.92 30.59 0.18 -1.75 16 23 C -0.11 -2.27 5.76 30.57 0.18 -2.10 16 24 C -0.10 -1.85 4.50 30.57 0.14 -1.72 16 25 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 26 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 27 H 0.11 0.91 8.14 -2.39 -0.02 0.89 16 28 H 0.41 5.96 6.40 -92.71 -0.59 5.36 16 29 H 0.06 1.33 6.76 -2.39 -0.02 1.32 16 30 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 31 H 0.34 8.91 7.28 -89.69 -0.65 8.26 16 32 H 0.06 1.71 6.60 -2.39 -0.02 1.70 16 33 H 0.11 2.93 6.22 -2.39 -0.01 2.92 16 34 H 0.39 15.66 5.76 -92.71 -0.53 15.13 16 35 H 0.28 15.41 8.31 -92.71 -0.77 14.64 16 36 H 0.07 0.90 7.09 -2.39 -0.02 0.88 16 37 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 38 H 0.07 1.00 8.14 -2.39 -0.02 0.99 16 39 H 0.05 1.27 7.60 -2.38 -0.02 1.25 16 40 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 41 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 42 H 0.06 1.14 8.14 -2.38 -0.02 1.12 16 43 H 0.05 1.35 7.60 -2.39 -0.02 1.33 16 44 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 45 H 0.06 1.14 6.42 -2.39 -0.02 1.13 16 Total: -1.00 -78.27 352.21 0.52 -77.75 By element: Atomic # 1 Polarization: 42.06 SS G_CDS: -0.82 Total: 41.25 kcal Atomic # 6 Polarization: 5.53 SS G_CDS: 5.04 Total: 10.56 kcal Atomic # 7 Polarization: -114.37 SS G_CDS: -5.50 Total: -119.87 kcal Atomic # 8 Polarization: -51.23 SS G_CDS: -0.10 Total: -51.33 kcal Atomic # 14 Polarization: 39.74 SS G_CDS: 1.90 Total: 41.64 kcal Total: -78.27 0.52 -77.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001115372231.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.168 kcal (2) G-P(sol) polarization free energy of solvation -78.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds