Wall clock time and date at job start Tue Mar 31 2020 03:54:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 O 1.21277 * 120.00062 * 2 1 4 4 N 1.34776 * 119.99846 * 180.02562 * 2 1 3 5 5 C 1.46503 * 120.00076 * 180.02562 * 4 2 1 6 6 C 1.52998 * 109.47086 * 179.97438 * 5 4 2 7 7 C 1.52993 * 109.47128 * 179.97438 * 6 5 4 8 8 H 1.08999 * 109.53930 * 305.10454 * 7 6 5 9 9 C 1.53120 * 109.50287 * 65.19925 * 7 6 5 10 10 C 1.53120 * 109.16392 * 177.59357 * 9 7 6 11 11 C 1.53031 * 109.27982 * 302.35096 * 10 9 7 12 12 N 1.46848 * 109.52884 * 59.17554 * 11 10 9 13 13 C 1.46896 * 111.00506 * 174.16304 * 12 11 10 14 14 C 1.50701 * 109.46946 * 294.21346 * 13 12 11 15 15 O 1.21293 * 120.00278 * 359.97438 * 14 13 12 16 16 N 1.34777 * 120.00078 * 180.02562 * 14 13 12 17 17 C 1.37095 * 119.99959 * 179.97438 * 16 14 13 18 18 H 1.07991 * 120.00408 * 359.97438 * 17 16 14 19 19 C 1.38950 * 119.99816 * 179.97438 * 17 16 14 20 20 N 1.31414 * 119.99922 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 120.00126 * 179.97438 * 19 17 16 22 22 H 1.48494 * 109.47228 * 179.97438 * 21 19 17 23 23 H 1.48501 * 109.46793 * 299.99915 * 21 19 17 24 24 H 1.48500 * 109.47000 * 60.00007 * 21 19 17 25 25 C 1.46846 * 111.19676 * 298.26128 * 12 11 10 26 26 H 1.08994 * 109.47054 * 179.97438 * 1 2 3 27 27 H 1.08992 * 109.46902 * 299.99879 * 1 2 3 28 28 H 1.09001 * 109.46955 * 60.00030 * 1 2 3 29 29 H 0.97001 * 119.99809 * 359.97438 * 4 2 1 30 30 H 1.08999 * 109.46995 * 59.99896 * 5 4 2 31 31 H 1.08996 * 109.46800 * 300.00013 * 5 4 2 32 32 H 1.09005 * 109.47023 * 60.00050 * 6 5 4 33 33 H 1.08998 * 109.47389 * 300.00283 * 6 5 4 34 34 H 1.09000 * 109.52691 * 297.50093 * 9 7 6 35 35 H 1.09002 * 109.51890 * 57.68963 * 9 7 6 36 36 H 1.09002 * 109.50190 * 62.28539 * 10 9 7 37 37 H 1.08999 * 109.50478 * 182.36707 * 10 9 7 38 38 H 1.09004 * 109.46233 * 299.15927 * 11 10 9 39 39 H 1.08999 * 109.46671 * 179.19272 * 11 10 9 40 40 H 1.08994 * 109.47346 * 174.21249 * 13 12 11 41 41 H 1.09006 * 109.47133 * 54.20641 * 13 12 11 42 42 H 0.97000 * 119.99555 * 359.97438 * 16 14 13 43 43 H 0.96996 * 120.00340 * 359.97438 * 20 19 17 44 44 H 1.08997 * 109.46700 * 181.75417 * 25 12 11 45 45 H 1.09001 * 109.46187 * 301.72591 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.6459 -1.1673 0.0000 6 6 4.1559 -2.6098 -0.0001 7 6 5.6858 -2.6098 -0.0001 8 1 6.0503 -2.0191 -0.8405 9 6 6.1971 -2.0045 1.3101 10 6 7.7270 -2.0634 1.3277 11 6 8.1787 -3.5162 1.1632 12 7 7.6651 -4.0494 -0.1050 13 6 8.1930 -5.3958 -0.3624 14 6 9.6827 -5.3188 -0.5767 15 8 10.2489 -4.2476 -0.5210 16 7 10.3858 -6.4401 -0.8313 17 6 11.7409 -6.3699 -1.0268 18 1 12.2450 -5.4162 -0.9772 19 6 12.4658 -7.5260 -1.2888 20 7 11.8525 -8.6867 -1.3487 21 14 14.3122 -7.4304 -1.5559 22 1 14.8460 -8.7916 -1.8153 23 1 14.5991 -6.5553 -2.7209 24 1 14.9593 -6.8683 -0.3432 25 6 6.1968 -4.0469 -0.1261 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 1.6958 -2.0072 -0.0005 30 1 4.0089 -0.6540 0.8905 31 1 4.0096 -0.6529 -0.8894 32 1 3.7928 -3.1234 -0.8904 33 1 3.7921 -3.1238 0.8896 34 1 5.8716 -0.9669 1.3835 35 1 5.8010 -2.5719 2.1524 36 1 8.1237 -1.4640 0.5082 37 1 8.0954 -1.6722 2.2761 38 1 7.7933 -4.1122 1.9905 39 1 9.2679 -3.5599 1.1609 40 1 7.7186 -5.8080 -1.2530 41 1 7.9817 -6.0385 0.4923 42 1 9.9329 -7.2967 -0.8763 43 1 10.8938 -8.7365 -1.2096 44 1 5.8463 -4.4760 -1.0648 45 1 5.8206 -4.6404 0.7072 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001117354612.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:54:48 Heat of formation + Delta-G solvation = -87.566392 kcal Electronic energy + Delta-G solvation = -23827.919154 eV Core-core repulsion = 20265.491250 eV Total energy + Delta-G solvation = -3562.427903 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.97795 -39.36108 -37.95165 -35.84174 -34.37640 -33.59838 -32.08812 -31.03035 -30.50257 -28.17816 -27.14928 -24.55398 -23.72083 -22.76073 -21.43484 -20.83685 -19.64445 -19.49032 -17.87768 -17.10283 -16.60405 -16.19031 -16.01784 -15.58827 -15.00809 -14.84366 -14.54408 -14.12351 -14.10179 -13.82211 -13.71096 -13.48928 -13.25102 -13.07949 -12.63739 -12.52175 -12.45887 -12.19990 -11.72516 -11.57572 -11.39078 -11.20032 -10.97221 -10.93721 -10.61425 -10.38630 -10.21384 -10.19068 -10.14800 -9.83888 -9.48331 -9.39679 -8.46117 -8.02810 -7.87372 -6.74107 -3.87029 2.31497 2.88094 3.31949 3.35599 3.55838 3.85453 3.93653 4.31304 4.41374 4.53646 4.61575 4.75902 4.82187 4.88700 4.98308 5.01362 5.07387 5.24573 5.25797 5.34018 5.42479 5.43927 5.54322 5.61391 5.62176 5.64576 5.71351 5.74804 5.87401 5.92127 6.01615 6.06632 6.08538 6.13797 6.22260 6.47868 6.55395 7.14113 7.26995 7.41510 7.82771 7.88398 8.09594 8.61972 8.82274 9.49294 9.90592 10.69384 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.044732 B = 0.002252 C = 0.002200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 625.793934 B =12430.348893 C =12721.442870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.507 3.493 3 O -0.548 6.548 4 N -0.731 5.731 5 C 0.115 3.885 6 C -0.124 4.124 7 C -0.079 4.079 8 H 0.084 0.916 9 C -0.118 4.118 10 C -0.113 4.113 11 C 0.052 3.948 12 N -0.515 5.515 13 C 0.047 3.953 14 C 0.446 3.554 15 O -0.570 6.570 16 N -0.577 5.577 17 C -0.380 4.380 18 H 0.099 0.901 19 C -0.011 4.011 20 N -0.902 5.902 21 Si 1.091 2.909 22 H -0.279 1.279 23 H -0.284 1.284 24 H -0.284 1.284 25 C 0.062 3.938 26 H 0.075 0.925 27 H 0.094 0.906 28 H 0.094 0.906 29 H 0.400 0.600 30 H 0.071 0.929 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.068 0.932 34 H 0.063 0.937 35 H 0.056 0.944 36 H 0.073 0.927 37 H 0.063 0.937 38 H 0.019 0.981 39 H 0.102 0.898 40 H 0.087 0.913 41 H 0.045 0.955 42 H 0.375 0.625 43 H 0.261 0.739 44 H 0.072 0.928 45 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.152 8.806 4.456 24.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.294 3.706 3 O -0.426 6.426 4 N -0.384 5.384 5 C -0.008 4.008 6 C -0.163 4.163 7 C -0.099 4.099 8 H 0.103 0.897 9 C -0.155 4.155 10 C -0.151 4.151 11 C -0.075 4.075 12 N -0.239 5.239 13 C -0.085 4.085 14 C 0.232 3.768 15 O -0.453 6.453 16 N -0.216 5.216 17 C -0.510 4.510 18 H 0.117 0.883 19 C -0.213 4.213 20 N -0.541 5.541 21 Si 0.917 3.083 22 H -0.204 1.204 23 H -0.210 1.210 24 H -0.211 1.211 25 C -0.066 4.066 26 H 0.094 0.906 27 H 0.112 0.888 28 H 0.112 0.888 29 H 0.235 0.765 30 H 0.089 0.911 31 H 0.087 0.913 32 H 0.089 0.911 33 H 0.087 0.913 34 H 0.082 0.918 35 H 0.075 0.925 36 H 0.091 0.909 37 H 0.082 0.918 38 H 0.037 0.963 39 H 0.120 0.880 40 H 0.105 0.895 41 H 0.063 0.937 42 H 0.208 0.792 43 H 0.072 0.928 44 H 0.090 0.910 45 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -19.767 9.684 3.790 22.335 hybrid contribution -2.292 -0.693 0.930 2.568 sum -22.058 8.991 4.720 24.284 Atomic orbital electron populations 1.21850 0.91741 1.04158 1.05320 1.20837 0.90636 0.83542 0.75631 1.90743 1.70805 1.31454 1.49583 1.46197 1.07836 1.08716 1.75620 1.21465 0.79016 0.97510 1.02805 1.21797 0.96305 0.95472 1.02683 1.21085 0.92618 0.96869 0.99315 0.89749 1.21722 0.96517 1.00543 0.96729 1.21537 0.94692 0.97009 1.01890 1.22262 1.02875 0.94335 0.88073 1.61455 1.05982 1.21720 1.34745 1.21825 0.95741 0.89905 1.00984 1.19682 0.87769 0.84948 0.84385 1.90491 1.71023 1.28238 1.55532 1.41948 1.08603 1.07436 1.63577 1.20520 0.82733 0.98242 1.49484 0.88338 1.26503 1.08061 0.91022 0.95688 1.70901 1.11083 1.25220 1.46943 0.83131 0.72106 0.76063 0.76970 1.20448 1.21002 1.21055 1.22096 0.88201 0.95817 1.00481 0.90616 0.88779 0.88754 0.76549 0.91102 0.91280 0.91091 0.91338 0.91815 0.92484 0.90857 0.91850 0.96267 0.88019 0.89502 0.93715 0.79222 0.92810 0.90976 0.95341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.79 10.39 36.01 0.37 -0.41 16 2 C 0.51 4.55 7.94 -10.98 -0.09 4.47 16 3 O -0.55 -7.71 17.10 5.56 0.10 -7.61 16 4 N -0.73 -5.17 5.56 -60.29 -0.33 -5.50 16 5 C 0.12 0.99 5.43 -4.04 -0.02 0.97 16 6 C -0.12 -0.93 4.80 -26.74 -0.13 -1.06 16 7 C -0.08 -0.83 2.35 -90.54 -0.21 -1.04 16 8 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 9 C -0.12 -1.27 4.98 -26.61 -0.13 -1.41 16 10 C -0.11 -1.54 6.09 -26.65 -0.16 -1.70 16 11 C 0.05 0.85 5.11 -3.84 -0.02 0.83 16 12 N -0.51 -8.52 4.40 -236.12 -1.04 -9.56 16 13 C 0.05 0.83 5.45 -4.98 -0.03 0.81 16 14 C 0.45 10.56 7.46 -10.98 -0.08 10.48 16 15 O -0.57 -15.43 13.90 5.55 0.08 -15.35 16 16 N -0.58 -14.56 5.28 -10.97 -0.06 -14.62 16 17 C -0.38 -10.72 9.68 -14.93 -0.14 -10.86 16 18 H 0.10 2.94 7.16 -52.49 -0.38 2.56 16 19 C -0.01 -0.29 5.50 -17.47 -0.10 -0.38 16 20 N -0.90 -25.32 13.68 55.50 0.76 -24.56 16 21 Si 1.09 24.37 29.92 -169.99 -5.09 19.29 16 22 H -0.28 -6.18 7.11 56.52 0.40 -5.77 16 23 H -0.28 -6.13 7.11 56.52 0.40 -5.72 16 24 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 25 C 0.06 0.77 4.74 -3.83 -0.02 0.75 16 26 H 0.07 0.15 7.91 -51.93 -0.41 -0.26 16 27 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.09 0.40 8.14 -51.93 -0.42 -0.03 16 29 H 0.40 1.59 8.31 -40.82 -0.34 1.26 16 30 H 0.07 0.69 6.63 -51.93 -0.34 0.34 16 31 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.06 0.64 6.70 -51.93 -0.35 0.29 16 35 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 36 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 37 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.02 0.30 8.14 -51.93 -0.42 -0.13 16 39 H 0.10 2.06 5.78 -51.93 -0.30 1.76 16 40 H 0.09 1.39 7.99 -51.93 -0.41 0.97 16 41 H 0.04 0.73 8.12 -51.93 -0.42 0.31 16 42 H 0.37 8.73 6.73 -40.82 -0.27 8.45 16 43 H 0.26 7.03 6.78 -40.82 -0.28 6.75 16 44 H 0.07 0.82 8.02 -51.93 -0.42 0.41 16 45 H 0.03 0.33 8.14 -51.93 -0.42 -0.09 16 LS Contribution 360.77 15.07 5.44 5.44 Total: -1.00 -35.29 360.77 -8.28 -43.57 By element: Atomic # 1 Polarization: 14.85 SS G_CDS: -7.37 Total: 7.48 kcal Atomic # 6 Polarization: 2.19 SS G_CDS: -0.76 Total: 1.43 kcal Atomic # 7 Polarization: -53.57 SS G_CDS: -0.67 Total: -54.24 kcal Atomic # 8 Polarization: -23.14 SS G_CDS: 0.17 Total: -22.96 kcal Atomic # 14 Polarization: 24.37 SS G_CDS: -5.09 Total: 19.29 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -35.29 -8.28 -43.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117354612.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.997 kcal (2) G-P(sol) polarization free energy of solvation -35.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds