Wall clock time and date at job start Tue Mar 31 2020 03:54:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 O 1.21277 * 120.00062 * 2 1 4 4 N 1.34776 * 119.99846 * 180.02562 * 2 1 3 5 5 C 1.46503 * 120.00076 * 180.02562 * 4 2 1 6 6 C 1.52998 * 109.47086 * 179.97438 * 5 4 2 7 7 C 1.52993 * 109.47128 * 179.97438 * 6 5 4 8 8 H 1.08999 * 109.53930 * 305.10454 * 7 6 5 9 9 C 1.53120 * 109.50287 * 65.19925 * 7 6 5 10 10 C 1.53120 * 109.16392 * 177.59357 * 9 7 6 11 11 C 1.53031 * 109.27982 * 302.35096 * 10 9 7 12 12 N 1.46848 * 109.52884 * 59.17554 * 11 10 9 13 13 C 1.46896 * 111.00506 * 174.16304 * 12 11 10 14 14 C 1.50701 * 109.46946 * 294.21346 * 13 12 11 15 15 O 1.21293 * 120.00278 * 359.97438 * 14 13 12 16 16 N 1.34777 * 120.00078 * 180.02562 * 14 13 12 17 17 C 1.37095 * 119.99959 * 179.97438 * 16 14 13 18 18 H 1.07991 * 120.00408 * 359.97438 * 17 16 14 19 19 C 1.38950 * 119.99816 * 179.97438 * 17 16 14 20 20 N 1.31414 * 119.99922 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 120.00126 * 179.97438 * 19 17 16 22 22 H 1.48494 * 109.47228 * 179.97438 * 21 19 17 23 23 H 1.48501 * 109.46793 * 299.99915 * 21 19 17 24 24 H 1.48500 * 109.47000 * 60.00007 * 21 19 17 25 25 C 1.46846 * 111.19676 * 298.26128 * 12 11 10 26 26 H 1.08994 * 109.47054 * 179.97438 * 1 2 3 27 27 H 1.08992 * 109.46902 * 299.99879 * 1 2 3 28 28 H 1.09001 * 109.46955 * 60.00030 * 1 2 3 29 29 H 0.97001 * 119.99809 * 359.97438 * 4 2 1 30 30 H 1.08999 * 109.46995 * 59.99896 * 5 4 2 31 31 H 1.08996 * 109.46800 * 300.00013 * 5 4 2 32 32 H 1.09005 * 109.47023 * 60.00050 * 6 5 4 33 33 H 1.08998 * 109.47389 * 300.00283 * 6 5 4 34 34 H 1.09000 * 109.52691 * 297.50093 * 9 7 6 35 35 H 1.09002 * 109.51890 * 57.68963 * 9 7 6 36 36 H 1.09002 * 109.50190 * 62.28539 * 10 9 7 37 37 H 1.08999 * 109.50478 * 182.36707 * 10 9 7 38 38 H 1.09004 * 109.46233 * 299.15927 * 11 10 9 39 39 H 1.08999 * 109.46671 * 179.19272 * 11 10 9 40 40 H 1.08994 * 109.47346 * 174.21249 * 13 12 11 41 41 H 1.09006 * 109.47133 * 54.20641 * 13 12 11 42 42 H 0.97000 * 119.99555 * 359.97438 * 16 14 13 43 43 H 0.96996 * 120.00340 * 359.97438 * 20 19 17 44 44 H 1.08997 * 109.46700 * 181.75417 * 25 12 11 45 45 H 1.09001 * 109.46187 * 301.72591 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.6459 -1.1673 0.0000 6 6 4.1559 -2.6098 -0.0001 7 6 5.6858 -2.6098 -0.0001 8 1 6.0503 -2.0191 -0.8405 9 6 6.1971 -2.0045 1.3101 10 6 7.7270 -2.0634 1.3277 11 6 8.1787 -3.5162 1.1632 12 7 7.6651 -4.0494 -0.1050 13 6 8.1930 -5.3958 -0.3624 14 6 9.6827 -5.3188 -0.5767 15 8 10.2489 -4.2476 -0.5210 16 7 10.3858 -6.4401 -0.8313 17 6 11.7409 -6.3699 -1.0268 18 1 12.2450 -5.4162 -0.9772 19 6 12.4658 -7.5260 -1.2888 20 7 11.8525 -8.6867 -1.3487 21 14 14.3122 -7.4304 -1.5559 22 1 14.8460 -8.7916 -1.8153 23 1 14.5991 -6.5553 -2.7209 24 1 14.9593 -6.8683 -0.3432 25 6 6.1968 -4.0469 -0.1261 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 1.6958 -2.0072 -0.0005 30 1 4.0089 -0.6540 0.8905 31 1 4.0096 -0.6529 -0.8894 32 1 3.7928 -3.1234 -0.8904 33 1 3.7921 -3.1238 0.8896 34 1 5.8716 -0.9669 1.3835 35 1 5.8010 -2.5719 2.1524 36 1 8.1237 -1.4640 0.5082 37 1 8.0954 -1.6722 2.2761 38 1 7.7933 -4.1122 1.9905 39 1 9.2679 -3.5599 1.1609 40 1 7.7186 -5.8080 -1.2530 41 1 7.9817 -6.0385 0.4923 42 1 9.9329 -7.2967 -0.8763 43 1 10.8938 -8.7365 -1.2096 44 1 5.8463 -4.4760 -1.0648 45 1 5.8206 -4.6404 0.7072 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001117354612.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:54:47 Heat of formation + Delta-G solvation = -114.977536 kcal Electronic energy + Delta-G solvation = -23829.107790 eV Core-core repulsion = 20265.491250 eV Total energy + Delta-G solvation = -3563.616540 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.92419 -40.53731 -39.49916 -36.84681 -36.22642 -34.71437 -33.27126 -32.89535 -31.11619 -29.22384 -28.32139 -26.34483 -24.80084 -23.86618 -22.41792 -21.65775 -21.20225 -20.60055 -19.94488 -18.08695 -17.75413 -17.22587 -16.98249 -16.70600 -16.37399 -16.25585 -15.72146 -15.54724 -15.36844 -15.14351 -14.96351 -14.52250 -14.31634 -13.96687 -13.77158 -13.35859 -13.32584 -13.08341 -13.03442 -12.98732 -12.67749 -12.55024 -12.32181 -11.95113 -11.92324 -11.88470 -11.63064 -11.53586 -11.34795 -11.14390 -10.94886 -10.29490 -10.09781 -10.07699 -9.20601 -8.92190 -6.05690 1.52495 1.53985 1.64976 1.82111 2.01686 2.27884 2.40733 2.72722 3.16552 3.25406 3.68677 3.85083 3.87937 3.99403 4.03269 4.20732 4.25183 4.28699 4.31033 4.39282 4.50177 4.51858 4.58186 4.63081 4.66323 4.67648 4.78707 4.85927 4.90156 5.02193 5.04808 5.11960 5.18007 5.23567 5.37498 5.46641 5.50897 5.60662 5.95779 6.02516 6.24901 6.59278 6.60520 6.76720 7.29038 7.45458 7.95318 8.55656 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.044732 B = 0.002252 C = 0.002200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 625.793934 B =12430.348893 C =12721.442870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.498 3.502 3 O -0.609 6.609 4 N -0.717 5.717 5 C 0.117 3.883 6 C -0.107 4.107 7 C -0.076 4.076 8 H 0.065 0.935 9 C -0.110 4.110 10 C -0.110 4.110 11 C 0.055 3.945 12 N -0.538 5.538 13 C 0.059 3.941 14 C 0.444 3.556 15 O -0.609 6.609 16 N -0.589 5.589 17 C -0.408 4.408 18 H 0.071 0.929 19 C -0.043 4.043 20 N -0.917 5.917 21 Si 1.133 2.867 22 H -0.272 1.272 23 H -0.274 1.274 24 H -0.274 1.274 25 C 0.062 3.938 26 H 0.108 0.892 27 H 0.099 0.901 28 H 0.098 0.902 29 H 0.419 0.581 30 H 0.058 0.942 31 H 0.049 0.951 32 H 0.087 0.913 33 H 0.088 0.912 34 H 0.071 0.929 35 H 0.072 0.928 36 H 0.050 0.950 37 H 0.072 0.928 38 H 0.032 0.968 39 H 0.054 0.946 40 H 0.112 0.888 41 H 0.067 0.933 42 H 0.384 0.616 43 H 0.259 0.741 44 H 0.086 0.914 45 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.787 7.783 4.830 26.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.287 3.713 3 O -0.491 6.491 4 N -0.370 5.370 5 C -0.007 4.007 6 C -0.145 4.145 7 C -0.096 4.096 8 H 0.083 0.917 9 C -0.148 4.148 10 C -0.148 4.148 11 C -0.072 4.072 12 N -0.262 5.262 13 C -0.072 4.072 14 C 0.231 3.769 15 O -0.494 6.494 16 N -0.228 5.228 17 C -0.537 4.537 18 H 0.089 0.911 19 C -0.241 4.241 20 N -0.557 5.557 21 Si 0.953 3.047 22 H -0.197 1.197 23 H -0.199 1.199 24 H -0.199 1.199 25 C -0.065 4.065 26 H 0.127 0.873 27 H 0.118 0.882 28 H 0.117 0.883 29 H 0.256 0.744 30 H 0.076 0.924 31 H 0.067 0.933 32 H 0.105 0.895 33 H 0.106 0.894 34 H 0.090 0.910 35 H 0.091 0.909 36 H 0.068 0.932 37 H 0.091 0.909 38 H 0.051 0.949 39 H 0.072 0.928 40 H 0.130 0.870 41 H 0.084 0.916 42 H 0.218 0.782 43 H 0.070 0.930 44 H 0.104 0.896 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -22.467 8.611 4.169 24.419 hybrid contribution -1.516 -0.324 0.829 1.758 sum -23.983 8.287 4.998 25.862 Atomic orbital electron populations 1.21869 0.88104 1.06493 1.05760 1.21681 0.92441 0.82918 0.74250 1.90717 1.72303 1.33598 1.52460 1.46097 1.07275 1.09301 1.74339 1.21326 0.80038 0.98021 1.01320 1.21640 0.93675 0.94783 1.04438 1.21038 0.94742 0.95507 0.98310 0.91651 1.21678 0.94007 1.01486 0.97609 1.21503 0.97034 0.94828 1.01472 1.22117 1.00076 0.96326 0.88726 1.61417 1.08906 1.20943 1.34978 1.21712 0.91079 0.91439 1.02975 1.20844 0.90311 0.83746 0.81959 1.90475 1.72701 1.29723 1.56507 1.42001 1.07965 1.08430 1.64433 1.20487 0.84458 0.97549 1.51226 0.91053 1.27802 1.11535 0.90259 0.94548 1.70969 1.11301 1.25577 1.47805 0.82633 0.67851 0.76567 0.77643 1.19650 1.19936 1.19909 1.22222 0.85114 0.97174 1.01949 0.87345 0.88216 0.88311 0.74353 0.92374 0.93266 0.89459 0.89357 0.91030 0.90915 0.93161 0.90902 0.94940 0.92790 0.87006 0.91561 0.78182 0.92999 0.89604 0.93509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.07 10.39 71.24 0.74 -0.33 16 2 C 0.50 8.25 7.94 87.66 0.70 8.94 16 3 O -0.61 -17.25 17.10 -3.02 -0.05 -17.30 16 4 N -0.72 -8.39 5.56 -463.06 -2.57 -10.97 16 5 C 0.12 1.81 5.43 86.38 0.47 2.28 16 6 C -0.11 -1.24 4.80 30.59 0.15 -1.10 16 7 C -0.08 -1.43 2.35 -10.74 -0.03 -1.46 16 8 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 9 C -0.11 -2.19 4.98 30.67 0.15 -2.04 16 10 C -0.11 -2.99 6.09 30.64 0.19 -2.80 16 11 C 0.06 1.81 5.11 86.32 0.44 2.25 16 12 N -0.54 -17.20 4.40 -900.94 -3.96 -21.17 16 13 C 0.06 2.02 5.45 85.56 0.47 2.49 16 14 C 0.44 21.34 7.46 87.66 0.65 21.99 16 15 O -0.61 -34.32 13.90 -3.07 -0.04 -34.36 16 16 N -0.59 -30.21 5.28 -306.99 -1.62 -31.83 16 17 C -0.41 -23.57 9.68 84.04 0.81 -22.76 16 18 H 0.07 4.44 7.16 -2.91 -0.02 4.42 16 19 C -0.04 -2.38 5.50 84.93 0.47 -1.91 16 20 N -0.92 -51.40 13.68 21.66 0.30 -51.11 16 21 Si 1.13 49.06 29.92 68.60 2.05 51.11 16 22 H -0.27 -11.37 7.11 99.48 0.71 -10.67 16 23 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 24 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 25 C 0.06 1.35 4.74 86.33 0.41 1.76 16 26 H 0.11 -0.01 7.91 -2.39 -0.02 -0.03 16 27 H 0.10 0.59 8.14 -2.39 -0.02 0.57 16 28 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16 29 H 0.42 1.73 8.31 -92.71 -0.77 0.96 16 30 H 0.06 1.06 6.63 -2.39 -0.02 1.05 16 31 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.09 0.80 8.14 -2.38 -0.02 0.78 16 33 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 34 H 0.07 1.34 6.70 -2.39 -0.02 1.32 16 35 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 36 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 37 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 38 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16 39 H 0.05 2.29 5.78 -2.39 -0.01 2.27 16 40 H 0.11 3.29 7.99 -2.39 -0.02 3.27 16 41 H 0.07 2.01 8.12 -2.38 -0.02 1.99 16 42 H 0.38 18.00 6.73 -92.71 -0.62 17.37 16 43 H 0.26 14.01 6.78 -92.71 -0.63 13.38 16 44 H 0.09 1.64 8.02 -2.39 -0.02 1.62 16 45 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 Total: -1.00 -80.58 360.77 -0.54 -81.12 By element: Atomic # 1 Polarization: 27.43 SS G_CDS: -0.26 Total: 27.18 kcal Atomic # 6 Polarization: 1.71 SS G_CDS: 5.62 Total: 7.32 kcal Atomic # 7 Polarization: -107.21 SS G_CDS: -7.86 Total: -115.07 kcal Atomic # 8 Polarization: -51.57 SS G_CDS: -0.09 Total: -51.66 kcal Atomic # 14 Polarization: 49.06 SS G_CDS: 2.05 Total: 51.11 kcal Total: -80.58 -0.54 -81.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117354612.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.858 kcal (2) G-P(sol) polarization free energy of solvation -80.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds