Wall clock time and date at job start Tue Mar 31 2020 03:59:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46960 * 110.99721 * 2 1 4 4 C 1.53047 * 109.36272 * 183.18990 * 3 2 1 5 5 N 1.46958 * 109.36754 * 301.59978 * 4 3 2 6 6 C 1.46893 * 111.00344 * 183.19017 * 5 4 3 7 7 C 1.50696 * 109.47119 * 170.00150 * 6 5 4 8 8 O 1.21281 * 120.00357 * 359.97438 * 7 6 5 9 9 N 1.34780 * 120.00208 * 179.97438 * 7 6 5 10 10 C 1.47432 * 125.64542 * 0.05251 * 9 7 6 11 11 C 1.54910 * 104.82947 * 204.08360 * 10 9 7 12 12 C 1.55160 * 101.58117 * 322.98905 * 11 10 9 13 13 O 1.42900 * 110.71963 * 277.14038 * 12 11 10 14 14 C 1.50700 * 110.71726 * 153.86756 * 12 11 10 15 15 H 1.07999 * 120.00196 * 238.22282 * 14 12 11 16 16 C 1.37884 * 119.99997 * 58.23149 * 14 12 11 17 17 N 1.31507 * 119.99955 * 6.12655 * 16 14 12 18 18 Si 1.86799 * 119.99632 * 186.13087 * 16 14 12 19 19 H 1.48499 * 109.47045 * 94.98527 * 18 16 14 20 20 H 1.48502 * 109.46699 * 214.98350 * 18 16 14 21 21 H 1.48499 * 109.47242 * 334.98246 * 18 16 14 22 22 C 1.47022 * 125.65012 * 179.97438 * 9 7 6 23 23 C 1.46958 * 110.87825 * 59.31741 * 5 4 3 24 24 C 1.46952 * 111.00221 * 123.79942 * 2 1 3 25 25 H 1.09004 * 109.47138 * 59.99674 * 1 2 3 26 26 H 1.08992 * 109.47110 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.46742 * 300.00061 * 1 2 3 28 28 H 1.09003 * 109.49088 * 63.22577 * 3 2 1 29 29 H 1.08997 * 109.51047 * 303.16762 * 3 2 1 30 30 H 1.09006 * 109.49212 * 181.63137 * 4 3 2 31 31 H 1.08997 * 109.50785 * 61.57704 * 4 3 2 32 32 H 1.08994 * 109.47550 * 49.99978 * 6 5 4 33 33 H 1.08999 * 109.47132 * 289.99870 * 6 5 4 34 34 H 1.08996 * 110.36695 * 85.24309 * 10 9 7 35 35 H 1.09000 * 110.36660 * 322.92023 * 10 9 7 36 36 H 1.09003 * 111.00157 * 204.91793 * 11 10 9 37 37 H 1.08991 * 111.00816 * 81.06439 * 11 10 9 38 38 H 0.96703 * 114.00348 * 298.54721 * 13 12 11 39 39 H 0.96999 * 120.00229 * 180.02562 * 17 16 14 40 40 H 1.09002 * 109.88197 * 59.57276 * 22 9 7 41 41 H 1.08994 * 109.88356 * 298.40118 * 22 9 7 42 42 H 1.08999 * 109.48457 * 60.64999 * 23 5 4 43 43 H 1.09002 * 109.48578 * 180.71358 * 23 5 4 44 44 H 1.09003 * 109.48870 * 296.78483 * 24 2 1 45 45 H 1.08996 * 109.48782 * 56.84219 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3720 0.0000 4 6 3.5234 1.3292 -0.0803 5 7 4.0501 0.5659 1.0597 6 6 5.5191 0.5660 1.0597 7 6 6.0214 -0.0074 2.3596 8 8 5.2334 -0.3791 3.2033 9 7 7.3465 -0.1073 2.5848 10 6 8.4102 0.3053 1.6509 11 6 9.6428 -0.5417 2.0548 12 6 9.4992 -0.5839 3.5992 13 8 10.0414 0.5989 4.1899 14 6 10.1613 -1.8148 4.1627 15 1 9.5856 -2.5192 4.7446 16 6 11.5023 -2.0416 3.9353 17 7 12.2306 -1.1281 3.3316 18 14 12.2843 -3.6465 4.4849 19 1 12.2927 -4.6065 3.3520 20 1 13.6785 -3.3915 4.9280 21 1 11.5034 -4.2173 5.6117 22 6 7.9707 -0.6441 3.8029 23 6 3.5235 -0.8060 1.0597 24 6 1.9957 -0.7632 1.1400 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.6938 1.8774 0.9174 29 1 1.6013 1.9133 -0.8600 30 1 3.9178 2.3450 -0.0513 31 1 3.8256 0.8483 -1.0106 32 1 5.8824 1.5876 0.9487 33 1 5.8824 -0.0409 0.2304 34 1 8.6254 1.3675 1.7664 35 1 8.1192 0.0858 0.6237 36 1 10.5692 -0.0476 1.7619 37 1 9.5848 -1.5435 1.6295 38 1 10.9859 0.7239 4.0242 39 1 13.1738 -1.2877 3.1713 40 1 7.6576 -1.6769 3.9556 41 1 7.6870 -0.0375 4.6629 42 1 3.8253 -1.3113 0.1423 43 1 3.9179 -1.3469 1.9199 44 1 1.6937 -0.2821 2.0704 45 1 1.6014 -1.7789 1.1110 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001118219621.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:59:21 Heat of formation + Delta-G solvation = -60.510317 kcal Electronic energy + Delta-G solvation = -25019.844525 eV Core-core repulsion = 21458.589861 eV Total energy + Delta-G solvation = -3561.254664 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.92845 -38.87055 -37.25848 -35.22168 -34.29688 -32.25774 -31.01080 -30.30974 -29.24775 -28.31299 -26.31221 -24.73559 -23.71765 -23.20011 -22.17620 -19.95595 -19.71366 -18.71506 -17.26406 -16.68695 -16.23838 -15.63722 -15.23758 -15.19221 -14.97919 -14.90324 -14.78309 -14.24750 -13.96852 -13.81872 -13.43759 -12.96832 -12.65392 -12.55640 -12.15091 -12.05655 -12.04567 -11.63191 -11.48500 -11.45953 -11.37040 -11.32231 -10.95653 -10.92876 -10.86456 -10.62731 -10.49180 -10.12921 -9.44533 -9.27865 -8.67303 -8.57626 -8.30274 -8.24802 -7.99230 -6.31653 -4.38097 3.07129 3.18161 3.26206 3.28801 3.34213 3.75610 3.99942 4.25543 4.73056 4.81656 4.87471 4.96698 5.05327 5.18244 5.20675 5.26382 5.36907 5.37877 5.43284 5.50146 5.53566 5.61612 5.65795 5.72100 5.76569 5.88590 5.96446 5.98924 6.04365 6.19256 6.44813 6.67683 6.73151 6.78954 6.88432 6.91665 7.01514 7.06027 7.26449 7.33088 7.70836 8.01136 8.11980 8.63877 8.68273 9.27488 9.38899 10.76249 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.034381 B = 0.003065 C = 0.002959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 814.212252 B = 9134.481387 C = 9461.256285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.548 5.548 3 C 0.058 3.942 4 C 0.057 3.943 5 N -0.523 5.523 6 C 0.043 3.957 7 C 0.523 3.477 8 O -0.538 6.538 9 N -0.610 5.610 10 C 0.094 3.906 11 C -0.135 4.135 12 C 0.246 3.754 13 O -0.586 6.586 14 C -0.535 4.535 15 H 0.064 0.936 16 C 0.073 3.927 17 N -0.894 5.894 18 Si 0.902 3.098 19 H -0.279 1.279 20 H -0.285 1.285 21 H -0.272 1.272 22 C 0.125 3.875 23 C 0.052 3.948 24 C 0.060 3.940 25 H 0.066 0.934 26 H 0.067 0.933 27 H 0.025 0.975 28 H 0.043 0.957 29 H 0.078 0.922 30 H 0.080 0.920 31 H 0.042 0.958 32 H 0.101 0.899 33 H 0.062 0.938 34 H 0.063 0.937 35 H 0.059 0.941 36 H 0.088 0.912 37 H 0.066 0.934 38 H 0.382 0.618 39 H 0.268 0.732 40 H 0.071 0.929 41 H 0.060 0.940 42 H 0.036 0.964 43 H 0.102 0.898 44 H 0.045 0.955 45 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.558 4.137 -9.917 18.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.273 5.273 3 C -0.070 4.070 4 C -0.071 4.071 5 N -0.248 5.248 6 C -0.088 4.088 7 C 0.310 3.690 8 O -0.416 6.416 9 N -0.344 5.344 10 C -0.028 4.028 11 C -0.174 4.174 12 C 0.206 3.794 13 O -0.395 6.395 14 C -0.573 4.573 15 H 0.083 0.917 16 C -0.130 4.130 17 N -0.534 5.534 18 Si 0.729 3.271 19 H -0.205 1.205 20 H -0.210 1.210 21 H -0.196 1.196 22 C 0.003 3.997 23 C -0.076 4.076 24 C -0.068 4.068 25 H 0.085 0.915 26 H 0.086 0.914 27 H 0.044 0.956 28 H 0.061 0.939 29 H 0.096 0.904 30 H 0.098 0.902 31 H 0.060 0.940 32 H 0.119 0.881 33 H 0.079 0.921 34 H 0.081 0.919 35 H 0.077 0.923 36 H 0.106 0.894 37 H 0.085 0.915 38 H 0.232 0.768 39 H 0.078 0.922 40 H 0.089 0.911 41 H 0.078 0.922 42 H 0.054 0.946 43 H 0.120 0.880 44 H 0.063 0.937 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -15.502 4.055 -9.332 18.543 hybrid contribution 1.205 -0.850 -0.084 1.477 sum -14.297 3.205 -9.416 17.417 Atomic orbital electron populations 1.22331 0.87363 1.02029 1.00541 1.62199 1.07720 1.13969 1.43422 1.22138 0.94429 0.89425 1.00990 1.22180 0.94491 0.98555 0.91908 1.61787 1.05747 1.14988 1.42297 1.21900 0.88724 1.02458 0.95672 1.19981 0.80915 0.79318 0.88743 1.90626 1.54335 1.49800 1.46846 1.48668 1.04565 1.61438 1.19717 1.22512 0.88979 0.99466 0.91889 1.23285 0.95326 0.98786 0.99960 1.19484 0.86976 0.84646 0.88266 1.86142 1.29561 1.45205 1.78566 1.21512 0.94951 1.06453 1.34409 0.91749 1.24984 0.96921 0.97071 0.94021 1.69698 1.07665 1.33667 1.42336 0.86413 0.78511 0.83095 0.79050 1.20516 1.21034 1.19645 1.22042 0.93659 0.98133 0.85850 1.22353 0.94069 0.89169 1.01964 1.22148 0.94778 0.98172 0.91704 0.91501 0.91413 0.95598 0.93851 0.90361 0.90164 0.93953 0.88109 0.92050 0.91878 0.92296 0.89393 0.91480 0.76790 0.92229 0.91054 0.92170 0.94607 0.88023 0.93683 0.90395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 9.60 60.07 0.58 0.79 16 2 N -0.55 -5.95 4.97 -242.76 -1.21 -7.15 16 3 C 0.06 0.59 5.62 -3.77 -0.02 0.57 16 4 C 0.06 0.62 5.61 -3.77 -0.02 0.60 16 5 N -0.52 -7.24 4.44 -235.92 -1.05 -8.29 16 6 C 0.04 0.61 4.45 -4.98 -0.02 0.59 16 7 C 0.52 9.64 7.55 -10.99 -0.08 9.56 16 8 O -0.54 -11.54 14.67 5.56 0.08 -11.46 16 9 N -0.61 -11.83 3.33 -170.52 -0.57 -12.40 16 10 C 0.09 1.65 6.68 -2.52 -0.02 1.63 16 11 C -0.13 -2.83 5.43 -24.58 -0.13 -2.96 16 12 C 0.25 5.85 0.84 -89.94 -0.08 5.77 16 13 O -0.59 -14.50 13.08 -35.23 -0.46 -14.96 16 14 C -0.53 -13.85 8.21 -34.44 -0.28 -14.13 16 15 H 0.06 1.69 7.62 -52.49 -0.40 1.29 16 16 C 0.07 1.85 5.24 -17.82 -0.09 1.75 16 17 N -0.89 -22.60 10.73 55.43 0.59 -22.01 16 18 Si 0.90 20.05 29.54 -169.99 -5.02 15.03 16 19 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 20 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 21 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 22 C 0.12 2.80 6.22 -3.06 -0.02 2.78 16 23 C 0.05 0.72 5.26 -3.77 -0.02 0.70 16 24 C 0.06 0.72 5.62 -3.77 -0.02 0.70 16 25 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.07 0.52 8.13 -51.93 -0.42 0.10 16 27 H 0.03 0.22 8.14 -51.93 -0.42 -0.21 16 28 H 0.04 0.48 8.14 -51.93 -0.42 0.05 16 29 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.08 0.76 8.07 -51.93 -0.42 0.34 16 31 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.10 1.24 8.03 -51.93 -0.42 0.83 16 33 H 0.06 0.78 7.83 -51.93 -0.41 0.38 16 34 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 35 H 0.06 0.85 7.48 -51.93 -0.39 0.46 16 36 H 0.09 1.91 7.54 -51.93 -0.39 1.52 16 37 H 0.07 1.45 8.04 -51.93 -0.42 1.03 16 38 H 0.38 9.41 7.53 45.56 0.34 9.76 16 39 H 0.27 6.50 8.31 -40.82 -0.34 6.16 16 40 H 0.07 1.63 7.68 -51.93 -0.40 1.23 16 41 H 0.06 1.41 8.07 -51.93 -0.42 0.99 16 42 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.10 1.66 5.85 -51.93 -0.30 1.35 16 44 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 45 H 0.08 0.84 8.13 -51.93 -0.42 0.41 16 LS Contribution 351.86 15.07 5.30 5.30 Total: -1.00 -28.52 351.86 -9.54 -38.06 By element: Atomic # 1 Polarization: 16.50 SS G_CDS: -6.98 Total: 9.53 kcal Atomic # 6 Polarization: 8.59 SS G_CDS: -0.23 Total: 8.35 kcal Atomic # 7 Polarization: -47.62 SS G_CDS: -2.23 Total: -49.85 kcal Atomic # 8 Polarization: -26.04 SS G_CDS: -0.38 Total: -26.42 kcal Atomic # 14 Polarization: 20.05 SS G_CDS: -5.02 Total: 15.03 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -28.52 -9.54 -38.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118219621.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.453 kcal (2) G-P(sol) polarization free energy of solvation -28.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds