Wall clock time and date at job start Tue Mar 31 2020 03:59:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46962 * 111.00191 * 2 1 4 4 C 1.53050 * 109.36581 * 176.80858 * 3 2 1 5 5 N 1.46962 * 109.36010 * 58.40330 * 4 3 2 6 6 C 1.46900 * 110.99775 * 176.80958 * 5 4 3 7 7 C 1.50704 * 109.47290 * 293.79965 * 6 5 4 8 8 O 1.21280 * 119.99539 * 359.97438 * 7 6 5 9 9 N 1.34773 * 119.99945 * 179.97438 * 7 6 5 10 10 C 1.47022 * 125.65194 * 0.02562 * 9 7 6 11 11 C 1.54320 * 107.27064 * 181.02077 * 10 9 7 12 12 C 1.55156 * 102.94513 * 22.19827 * 11 10 9 13 13 O 1.42898 * 111.00678 * 82.56758 * 12 11 10 14 14 C 1.50702 * 111.00450 * 206.38593 * 12 11 10 15 15 H 1.08003 * 119.99929 * 24.82241 * 14 12 11 16 16 C 1.37871 * 119.99828 * 204.82408 * 14 12 11 17 17 N 1.31512 * 120.00011 * 173.52858 * 16 14 12 18 18 Si 1.86801 * 120.00036 * 353.52428 * 16 14 12 19 19 H 1.48500 * 109.47195 * 87.32530 * 18 16 14 20 20 H 1.48507 * 109.47234 * 207.32075 * 18 16 14 21 21 H 1.48496 * 109.47036 * 327.31920 * 18 16 14 22 22 C 1.47425 * 125.64755 * 179.71692 * 9 7 6 23 23 C 1.46958 * 110.88134 * 300.67446 * 5 4 3 24 24 C 1.46953 * 111.00215 * 236.20115 * 2 1 3 25 25 H 1.09001 * 109.46850 * 183.79988 * 1 2 3 26 26 H 1.09001 * 109.46978 * 303.80126 * 1 2 3 27 27 H 1.09004 * 109.46623 * 63.79979 * 1 2 3 28 28 H 1.09003 * 109.48751 * 296.77999 * 3 2 1 29 29 H 1.08999 * 109.48438 * 56.84087 * 3 2 1 30 30 H 1.08997 * 109.48987 * 298.43724 * 4 3 2 31 31 H 1.09004 * 109.48798 * 178.36611 * 4 3 2 32 32 H 1.09007 * 109.46991 * 53.79973 * 6 5 4 33 33 H 1.08999 * 109.47463 * 173.79939 * 6 5 4 34 34 H 1.09000 * 109.88296 * 300.44518 * 10 9 7 35 35 H 1.09000 * 109.87811 * 61.45525 * 10 9 7 36 36 H 1.09006 * 110.71837 * 140.55893 * 11 10 9 37 37 H 1.09003 * 110.72086 * 263.65268 * 11 10 9 38 38 H 0.96700 * 113.99559 * 56.20725 * 13 12 11 39 39 H 0.97008 * 120.00082 * 179.97438 * 17 16 14 40 40 H 1.09003 * 110.36551 * 274.74783 * 22 9 7 41 41 H 1.09002 * 110.36586 * 37.06721 * 22 9 7 42 42 H 1.09003 * 109.48999 * 299.35606 * 23 5 4 43 43 H 1.08998 * 109.48774 * 179.28809 * 23 5 4 44 44 H 1.09009 * 109.48980 * 303.15448 * 24 2 1 45 45 H 1.08999 * 109.49296 * 63.22156 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9957 1.3720 0.0000 4 6 3.5235 1.3291 0.0804 5 7 4.0501 0.5659 -1.0598 6 6 5.5191 0.5659 -1.0598 7 6 6.0215 1.9651 -1.3065 8 8 5.2333 2.8728 -1.4670 9 7 7.3465 2.2077 -1.3487 10 6 8.4073 1.2052 -1.1719 11 6 9.7580 1.9443 -1.2749 12 6 9.3782 3.4108 -0.9396 13 8 9.3142 3.6132 0.4735 14 6 10.3419 4.3778 -1.5778 15 1 10.8916 4.0885 -2.4613 16 6 10.5218 5.6318 -1.0337 17 7 11.4526 6.4286 -1.5116 18 14 9.4434 6.1992 0.3821 19 1 10.0457 5.7648 1.6681 20 1 9.3371 7.6803 0.3607 21 1 8.0902 5.6038 0.2430 22 6 7.9724 3.5212 -1.5862 23 6 3.5235 -0.8061 -1.0597 24 6 1.9957 -0.7632 -1.1400 25 1 -0.3633 -1.0254 0.0681 26 1 -0.3633 0.5717 0.8540 27 1 -0.3633 0.4538 -0.9221 28 1 1.6938 1.8774 -0.9174 29 1 1.6013 1.9128 0.8602 30 1 3.8253 0.8479 1.0106 31 1 3.9178 2.3449 0.0513 32 1 5.8824 0.2143 -0.0940 33 1 5.8825 -0.0947 -1.8470 34 1 8.3148 0.7365 -0.1921 35 1 8.3359 0.4483 -1.9530 36 1 10.4680 1.5536 -0.5458 37 1 10.1630 1.8690 -2.2841 38 1 10.1280 3.3809 0.9413 39 1 11.5790 7.3110 -1.1291 40 1 8.0582 3.7126 -2.6559 41 1 7.3944 4.3096 -1.1041 42 1 3.8254 -1.3115 -0.1424 43 1 3.9178 -1.3470 -1.9200 44 1 1.6014 -1.7790 -1.1110 45 1 1.6939 -0.2821 -2.0704 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001118219622.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:59:23 Heat of formation + Delta-G solvation = -54.536171 kcal Electronic energy + Delta-G solvation = -25241.970517 eV Core-core repulsion = 21680.974912 eV Total energy + Delta-G solvation = -3560.995605 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.01977 -39.01434 -37.54122 -35.29236 -34.73153 -32.39527 -31.04826 -30.66633 -29.52113 -28.47334 -26.42931 -24.66595 -23.75441 -23.25014 -22.46361 -19.99703 -19.81781 -18.87261 -17.54405 -16.90215 -16.28945 -15.80221 -15.36100 -15.21469 -15.07971 -15.01996 -14.77137 -14.38686 -14.32164 -13.87667 -13.48978 -13.29527 -12.69253 -12.59560 -12.45168 -12.33269 -12.14926 -11.96827 -11.77081 -11.65324 -11.51654 -11.37427 -11.00882 -10.97483 -10.84844 -10.60216 -10.32099 -10.22871 -9.43689 -9.23998 -8.62094 -8.61526 -8.54284 -8.35589 -8.07846 -6.22141 -4.35093 3.00480 3.23160 3.45788 3.54984 3.72520 3.73176 3.93398 4.49334 4.69057 4.71481 4.83944 4.96347 5.05063 5.09445 5.13531 5.16982 5.21525 5.23792 5.32252 5.33762 5.36779 5.46499 5.52701 5.59570 5.61916 5.69306 5.72823 5.92796 5.98724 6.02300 6.09530 6.49399 6.55095 6.60414 6.70112 6.73118 6.76364 6.93232 6.97492 7.01502 7.44078 8.01504 8.09947 8.58127 8.61233 8.78717 9.39733 10.86383 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.029316 B = 0.003547 C = 0.003317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 954.871603 B = 7891.504932 C = 8439.869711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.548 5.548 3 C 0.060 3.940 4 C 0.052 3.948 5 N -0.523 5.523 6 C 0.043 3.957 7 C 0.524 3.476 8 O -0.533 6.533 9 N -0.614 5.614 10 C 0.103 3.897 11 C -0.148 4.148 12 C 0.219 3.781 13 O -0.558 6.558 14 C -0.553 4.553 15 H 0.082 0.918 16 C 0.075 3.925 17 N -0.886 5.886 18 Si 0.948 3.052 19 H -0.292 1.292 20 H -0.325 1.325 21 H -0.268 1.268 22 C 0.115 3.885 23 C 0.057 3.943 24 C 0.058 3.942 25 H 0.066 0.934 26 H 0.067 0.933 27 H 0.026 0.974 28 H 0.045 0.955 29 H 0.078 0.922 30 H 0.036 0.964 31 H 0.102 0.898 32 H 0.061 0.939 33 H 0.100 0.900 34 H 0.059 0.941 35 H 0.058 0.942 36 H 0.074 0.926 37 H 0.080 0.920 38 H 0.370 0.630 39 H 0.267 0.733 40 H 0.079 0.921 41 H 0.076 0.924 42 H 0.042 0.958 43 H 0.080 0.920 44 H 0.078 0.922 45 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.372 -16.524 2.858 22.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.273 5.273 3 C -0.068 4.068 4 C -0.076 4.076 5 N -0.248 5.248 6 C -0.088 4.088 7 C 0.311 3.689 8 O -0.410 6.410 9 N -0.348 5.348 10 C -0.020 4.020 11 C -0.187 4.187 12 C 0.178 3.822 13 O -0.366 6.366 14 C -0.590 4.590 15 H 0.100 0.900 16 C -0.130 4.130 17 N -0.521 5.521 18 Si 0.783 3.217 19 H -0.220 1.220 20 H -0.256 1.256 21 H -0.195 1.195 22 C -0.006 4.006 23 C -0.071 4.071 24 C -0.070 4.070 25 H 0.085 0.915 26 H 0.086 0.914 27 H 0.044 0.956 28 H 0.064 0.936 29 H 0.096 0.904 30 H 0.054 0.946 31 H 0.120 0.880 32 H 0.079 0.921 33 H 0.118 0.882 34 H 0.077 0.923 35 H 0.076 0.924 36 H 0.093 0.907 37 H 0.099 0.901 38 H 0.218 0.782 39 H 0.077 0.923 40 H 0.097 0.903 41 H 0.094 0.906 42 H 0.060 0.940 43 H 0.098 0.902 44 H 0.097 0.903 45 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -15.384 -15.702 2.607 22.136 hybrid contribution 0.224 0.065 0.761 0.796 sum -15.160 -15.637 3.368 22.038 Atomic orbital electron populations 1.22334 0.87318 1.02009 1.00607 1.62200 1.07762 1.14557 1.42804 1.22152 0.94728 0.88705 1.01233 1.22354 0.94115 1.00517 0.90565 1.61801 1.05679 1.13217 1.44138 1.21914 0.88876 0.95753 1.02249 1.20010 0.80977 0.90455 0.77463 1.90644 1.54168 1.46355 1.49878 1.48714 1.04444 1.11530 1.70130 1.22023 0.88614 0.91392 0.99979 1.23271 0.94333 0.98083 1.02987 1.20269 0.91917 0.91401 0.78565 1.86153 1.41695 1.87272 1.21471 1.21144 1.24340 0.98447 1.15061 0.89988 1.25151 0.94385 0.96092 0.97420 1.69961 1.30977 1.09150 1.41969 0.85699 0.81743 0.73532 0.80736 1.22002 1.25610 1.19455 1.22954 0.93655 0.83692 1.00327 1.22179 0.94551 0.89328 1.01039 1.22139 0.94395 0.98301 0.92168 0.91481 0.91391 0.95578 0.93646 0.90356 0.94590 0.88034 0.92097 0.88168 0.92255 0.92380 0.90737 0.90130 0.78196 0.92339 0.90314 0.90593 0.93970 0.90186 0.90347 0.93838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 9.60 60.06 0.58 0.79 16 2 N -0.55 -5.91 4.97 -242.75 -1.21 -7.11 16 3 C 0.06 0.72 5.62 -3.76 -0.02 0.70 16 4 C 0.05 0.73 5.26 -3.76 -0.02 0.71 16 5 N -0.52 -7.08 4.45 -235.90 -1.05 -8.13 16 6 C 0.04 0.57 4.64 -4.97 -0.02 0.55 16 7 C 0.52 9.40 7.55 -10.99 -0.08 9.32 16 8 O -0.53 -11.49 14.60 5.56 0.08 -11.41 16 9 N -0.61 -11.19 3.32 -170.38 -0.57 -11.76 16 10 C 0.10 1.52 6.48 -3.07 -0.02 1.50 16 11 C -0.15 -2.49 6.11 -24.90 -0.15 -2.65 16 12 C 0.22 4.70 0.70 -89.50 -0.06 4.63 16 13 O -0.56 -11.86 8.53 -35.23 -0.30 -12.16 16 14 C -0.55 -14.33 8.89 -34.44 -0.31 -14.63 16 15 H 0.08 2.29 8.00 -52.48 -0.42 1.87 16 16 C 0.08 2.08 5.46 -17.82 -0.10 1.98 16 17 N -0.89 -26.07 13.96 55.43 0.77 -25.29 16 18 Si 0.95 23.77 24.91 -169.99 -4.24 19.53 16 19 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 20 H -0.32 -8.39 7.11 56.52 0.40 -7.99 16 21 H -0.27 -6.91 5.42 56.52 0.31 -6.61 16 22 C 0.12 2.50 5.90 -2.41 -0.01 2.49 16 23 C 0.06 0.60 5.61 -3.77 -0.02 0.58 16 24 C 0.06 0.58 5.62 -3.77 -0.02 0.56 16 25 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.07 0.53 8.13 -51.93 -0.42 0.10 16 27 H 0.03 0.22 8.14 -51.93 -0.42 -0.20 16 28 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.08 0.86 8.13 -51.93 -0.42 0.43 16 30 H 0.04 0.49 8.14 -51.93 -0.42 0.06 16 31 H 0.10 1.70 5.85 -51.93 -0.30 1.39 16 32 H 0.06 0.74 8.12 -51.93 -0.42 0.32 16 33 H 0.10 1.12 8.03 -51.93 -0.42 0.70 16 34 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 36 H 0.07 1.11 8.12 -51.93 -0.42 0.69 16 37 H 0.08 1.36 7.99 -51.93 -0.41 0.94 16 38 H 0.37 6.69 8.99 45.56 0.41 7.10 16 39 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 40 H 0.08 1.73 8.04 -51.93 -0.42 1.31 16 41 H 0.08 1.86 6.50 -51.93 -0.34 1.52 16 42 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.08 0.71 8.07 -51.93 -0.42 0.29 16 44 H 0.08 0.62 8.14 -51.92 -0.42 0.20 16 45 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 LS Contribution 347.35 15.07 5.23 5.23 Total: -1.00 -32.51 347.35 -8.57 -41.08 By element: Atomic # 1 Polarization: 10.55 SS G_CDS: -7.04 Total: 3.50 kcal Atomic # 6 Polarization: 6.78 SS G_CDS: -0.26 Total: 6.51 kcal Atomic # 7 Polarization: -50.24 SS G_CDS: -2.05 Total: -52.29 kcal Atomic # 8 Polarization: -23.36 SS G_CDS: -0.22 Total: -23.58 kcal Atomic # 14 Polarization: 23.77 SS G_CDS: -4.24 Total: 19.53 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -32.51 -8.57 -41.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118219622.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.455 kcal (2) G-P(sol) polarization free energy of solvation -32.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.082 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds