Wall clock time and date at job start Tue Mar 31 2020 03:30:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46497 * 109.47188 * 2 1 4 4 C 1.46767 * 124.34893 * 89.99904 * 3 2 1 5 5 C 1.54476 * 105.47856 * 197.01865 * 4 3 2 6 6 H 1.08996 * 110.97048 * 92.73635 * 5 4 3 7 7 C 1.52995 * 110.97196 * 216.46967 * 5 4 3 8 8 N 1.46504 * 109.47249 * 184.99829 * 7 5 4 9 9 C 1.34774 * 120.00250 * 179.97438 * 8 7 5 10 10 O 1.21282 * 119.99912 * 0.02562 * 9 8 7 11 11 C 1.50701 * 120.00088 * 179.97438 * 9 8 7 12 12 H 1.09003 * 109.47104 * 320.00558 * 11 9 8 13 13 N 1.46904 * 109.47036 * 200.00548 * 11 9 8 14 14 C 1.53003 * 109.47050 * 80.00697 * 11 9 8 15 15 C 1.52994 * 109.47098 * 185.00190 * 14 11 9 16 16 C 1.50703 * 109.46996 * 180.02562 * 15 14 11 17 17 H 1.08003 * 119.99763 * 359.97438 * 16 15 14 18 18 C 1.37871 * 120.00105 * 179.97438 * 16 15 14 19 19 N 1.31518 * 120.00071 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 120.00295 * 179.97438 * 18 16 15 21 21 H 1.48507 * 109.47039 * 0.02562 * 20 18 16 22 22 H 1.48503 * 109.47448 * 119.99736 * 20 18 16 23 23 H 1.48501 * 109.47633 * 239.99861 * 20 18 16 24 24 C 1.54629 * 101.76276 * 334.58799 * 5 4 3 25 25 C 1.34418 * 124.35246 * 269.70382 * 3 2 1 26 26 O 1.21277 * 124.94298 * 359.57164 * 25 3 2 27 27 H 1.09002 * 109.47153 * 299.99573 * 1 2 3 28 28 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47261 * 59.99745 * 1 2 3 30 30 H 1.08996 * 109.47853 * 120.00399 * 2 1 3 31 31 H 1.09002 * 109.47153 * 240.00427 * 2 1 3 32 32 H 1.08995 * 110.24667 * 316.02099 * 4 3 2 33 33 H 1.09008 * 110.24384 * 78.01665 * 4 3 2 34 34 H 1.08999 * 109.47141 * 304.99531 * 7 5 4 35 35 H 1.08999 * 109.47705 * 64.99702 * 7 5 4 36 36 H 0.97003 * 119.99927 * 359.97438 * 8 7 5 37 37 H 1.00902 * 111.00132 * 299.99924 * 13 11 9 38 38 H 1.00899 * 110.99845 * 63.95649 * 13 11 9 39 39 H 1.09001 * 109.46849 * 305.00246 * 14 11 9 40 40 H 1.09001 * 109.46815 * 64.99848 * 14 11 9 41 41 H 1.09008 * 109.46918 * 299.99719 * 15 14 11 42 42 H 1.08995 * 109.47410 * 59.99727 * 15 14 11 43 43 H 0.97001 * 120.00134 * 180.02562 * 19 18 16 44 44 H 1.08996 * 110.48738 * 143.47716 * 24 5 4 45 45 H 1.09009 * 110.48328 * 265.98450 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2943 2.1619 1.2117 5 6 2.3529 3.6346 0.7489 6 1 1.3782 4.1128 0.8455 7 6 3.4197 4.4102 1.5241 8 7 3.3664 5.8246 1.1460 9 6 4.2198 6.7046 1.7062 10 8 5.0322 6.3254 2.5231 11 6 4.1654 8.1594 1.3168 12 1 3.9950 8.2421 0.2434 13 7 5.4383 8.8065 1.6618 14 6 3.0237 8.8463 2.0690 15 6 2.8885 10.2904 1.5822 16 6 1.7643 10.9671 2.3235 17 1 1.2024 10.4216 3.0671 18 6 1.4534 12.2827 2.0524 19 7 2.1381 12.9472 1.1472 20 14 0.0596 13.1214 2.9707 21 1 -0.5480 12.1641 3.9298 22 1 0.5898 14.2941 3.7115 23 1 -0.9709 13.5729 2.0014 24 6 2.7503 3.4822 -0.7377 25 6 2.2766 2.0944 -1.1097 26 8 2.1462 1.6857 -2.2441 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5139 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 1.4933 2.0265 1.9383 33 1 3.2501 1.8638 1.6430 34 1 3.2342 4.3129 2.5938 35 1 4.4048 4.0079 1.2882 36 1 2.7170 6.1278 0.4924 37 1 5.6193 8.7433 2.6525 38 1 6.1998 8.4134 1.1293 39 1 2.0924 8.3114 1.8829 40 1 3.2381 8.8416 3.1377 41 1 3.8199 10.8253 1.7683 42 1 2.6742 10.2951 0.5135 43 1 1.9195 13.8729 0.9567 44 1 2.2490 4.2352 -1.3457 45 1 3.8316 3.5580 -0.8531 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001118278356.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:30:11 Heat of formation + Delta-G solvation = -117.385388 kcal Electronic energy + Delta-G solvation = -23759.195961 eV Core-core repulsion = 20195.475009 eV Total energy + Delta-G solvation = -3563.720952 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.64274 -40.84202 -37.98312 -36.82040 -36.27635 -34.77606 -34.30810 -31.88734 -31.02412 -29.20057 -28.24180 -26.72482 -24.90348 -24.10385 -22.30398 -22.02826 -21.07801 -20.35398 -18.64583 -18.11524 -17.94952 -17.58035 -16.93830 -16.77688 -16.40255 -16.26861 -16.04897 -15.32640 -15.05645 -14.98824 -14.73267 -14.67524 -14.27538 -14.21096 -13.80157 -13.62064 -13.36355 -13.34519 -13.13957 -12.81836 -12.78888 -12.48139 -12.33798 -12.18675 -12.05860 -11.96684 -11.71654 -11.60602 -11.20427 -10.94713 -10.89709 -10.47174 -10.08034 -9.77530 -9.56629 -8.11814 -6.21671 1.42956 1.44100 1.49103 1.55657 1.58234 1.94520 2.27768 2.46486 3.21608 3.24933 3.40949 3.63499 3.68545 3.88540 4.01713 4.11194 4.17190 4.24116 4.29868 4.38029 4.47259 4.56235 4.61067 4.66119 4.69827 4.83392 4.83783 4.88482 4.94970 5.00276 5.12479 5.25070 5.30805 5.44497 5.58271 5.60697 5.88745 6.02445 6.06531 6.16143 6.33252 6.49907 6.58791 6.98206 7.09246 7.20300 7.46605 8.99556 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.018105 B = 0.002634 C = 0.002458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1546.181022 B =10627.543685 C =11387.480456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.115 3.885 3 N -0.617 5.617 4 C 0.110 3.890 5 C -0.098 4.098 6 H 0.113 0.887 7 C 0.132 3.868 8 N -0.716 5.716 9 C 0.491 3.509 10 O -0.582 6.582 11 C 0.083 3.917 12 H 0.110 0.890 13 N -0.822 5.822 14 C -0.081 4.081 15 C 0.037 3.963 16 C -0.540 4.540 17 H 0.057 0.943 18 C 0.000 4.000 19 N -0.931 5.931 20 Si 0.959 3.041 21 H -0.262 1.262 22 H -0.283 1.283 23 H -0.279 1.279 24 C -0.149 4.149 25 C 0.507 3.493 26 O -0.586 6.586 27 H 0.068 0.932 28 H 0.083 0.917 29 H 0.033 0.967 30 H 0.108 0.892 31 H 0.065 0.935 32 H 0.106 0.894 33 H 0.091 0.909 34 H 0.075 0.925 35 H 0.070 0.930 36 H 0.415 0.585 37 H 0.345 0.655 38 H 0.346 0.654 39 H 0.070 0.930 40 H 0.042 0.958 41 H 0.004 0.996 42 H -0.006 1.006 43 H 0.261 0.739 44 H 0.110 0.890 45 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.933 -26.266 0.418 26.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.007 4.007 3 N -0.350 5.350 4 C -0.013 4.013 5 C -0.117 4.117 6 H 0.132 0.868 7 C 0.008 3.992 8 N -0.368 5.368 9 C 0.276 3.724 10 O -0.462 6.462 11 C -0.033 4.033 12 H 0.127 0.873 13 N -0.351 5.351 14 C -0.119 4.119 15 C 0.000 4.000 16 C -0.578 4.578 17 H 0.075 0.925 18 C -0.198 4.198 19 N -0.572 5.572 20 Si 0.784 3.216 21 H -0.186 1.186 22 H -0.209 1.209 23 H -0.205 1.205 24 C -0.189 4.189 25 C 0.296 3.704 26 O -0.466 6.466 27 H 0.087 0.913 28 H 0.101 0.899 29 H 0.053 0.947 30 H 0.126 0.874 31 H 0.083 0.917 32 H 0.124 0.876 33 H 0.109 0.891 34 H 0.094 0.906 35 H 0.088 0.912 36 H 0.251 0.749 37 H 0.159 0.841 38 H 0.159 0.841 39 H 0.089 0.911 40 H 0.061 0.939 41 H 0.022 0.978 42 H 0.012 0.988 43 H 0.070 0.930 44 H 0.128 0.872 45 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -0.778 -26.023 0.082 26.035 hybrid contribution -0.513 -0.046 0.122 0.530 sum -1.291 -26.069 0.204 26.102 Atomic orbital electron populations 1.22113 0.95194 1.03216 1.01740 1.21511 0.94827 0.80530 1.03782 1.48518 1.64633 1.14486 1.07365 1.22220 1.03897 0.88427 0.86726 1.22289 1.00667 0.95761 0.93012 0.86849 1.21338 0.98597 0.79703 0.99562 1.46006 1.37340 1.08352 1.45091 1.22227 0.79969 0.89949 0.80239 1.90647 1.39610 1.80766 1.35162 1.21653 0.92798 0.86662 1.02158 0.87265 1.58963 1.03681 1.60242 1.12180 1.21381 0.95331 0.97018 0.98212 1.18847 0.95258 0.91338 0.94570 1.21779 1.17084 0.97204 1.21725 0.92471 1.25905 0.99227 0.98446 0.96202 1.70115 1.42142 1.10581 1.34320 0.85499 0.79089 0.78416 0.78614 1.18615 1.20875 1.20459 1.22499 1.04360 0.94290 0.97781 1.21414 0.75871 0.88995 0.84097 1.90698 1.55893 1.76766 1.23286 0.91311 0.89863 0.94732 0.87391 0.91683 0.87567 0.89088 0.90646 0.91200 0.74876 0.84150 0.84078 0.91094 0.93899 0.97767 0.98787 0.93020 0.87166 0.87082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.71 10.24 71.98 0.74 -0.98 16 2 C 0.11 1.28 6.66 86.38 0.57 1.85 16 3 N -0.62 -8.30 2.93 -817.99 -2.40 -10.69 16 4 C 0.11 0.81 6.91 86.83 0.60 1.42 16 5 C -0.10 -0.89 3.16 -9.74 -0.03 -0.92 16 6 H 0.11 0.87 8.14 -2.39 -0.02 0.85 16 7 C 0.13 1.75 4.98 86.38 0.43 2.18 16 8 N -0.72 -12.83 5.50 -463.06 -2.55 -15.38 16 9 C 0.49 13.03 7.07 87.66 0.62 13.65 16 10 O -0.58 -18.90 16.25 -3.04 -0.05 -18.95 16 11 C 0.08 2.52 3.15 44.17 0.14 2.66 16 12 H 0.11 3.07 8.14 -2.39 -0.02 3.05 16 13 N -0.82 -26.40 8.44 -171.78 -1.45 -27.85 16 14 C -0.08 -3.05 4.78 30.59 0.15 -2.91 16 15 C 0.04 1.87 4.86 29.85 0.15 2.01 16 16 C -0.54 -29.94 9.11 25.60 0.23 -29.70 16 17 H 0.06 3.04 7.74 -2.91 -0.02 3.02 16 18 C 0.00 -0.01 5.46 84.65 0.46 0.45 16 19 N -0.93 -56.30 13.29 21.45 0.28 -56.01 16 20 Si 0.96 43.81 29.54 68.60 2.03 45.84 16 21 H -0.26 -11.37 7.11 99.48 0.71 -10.66 16 22 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 23 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 24 C -0.15 -1.96 6.36 30.59 0.19 -1.76 16 25 C 0.51 10.03 8.02 87.90 0.71 10.73 16 26 O -0.59 -17.37 17.59 -3.02 -0.05 -17.42 16 27 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 28 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 29 H 0.03 0.54 8.14 -2.38 -0.02 0.52 16 30 H 0.11 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.06 0.96 7.92 -2.39 -0.02 0.94 16 32 H 0.11 0.41 8.14 -2.39 -0.02 0.39 16 33 H 0.09 0.50 7.89 -2.38 -0.02 0.48 16 34 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 35 H 0.07 1.00 7.93 -2.39 -0.02 0.98 16 36 H 0.41 5.91 8.47 -92.71 -0.79 5.12 16 37 H 0.34 11.36 8.58 -89.69 -0.77 10.59 16 38 H 0.35 9.49 9.06 -89.69 -0.81 8.67 16 39 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 40 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 41 H 0.00 0.22 7.75 -2.38 -0.02 0.20 16 42 H -0.01 -0.34 8.14 -2.39 -0.02 -0.36 16 43 H 0.26 14.86 8.31 -92.71 -0.77 14.09 16 44 H 0.11 1.38 8.14 -2.39 -0.02 1.36 16 45 H 0.11 1.40 7.75 -2.38 -0.02 1.39 16 Total: -1.00 -77.48 374.72 -0.60 -78.08 By element: Atomic # 1 Polarization: 25.07 SS G_CDS: -1.37 Total: 23.70 kcal Atomic # 6 Polarization: -6.27 SS G_CDS: 4.96 Total: -1.31 kcal Atomic # 7 Polarization: -103.82 SS G_CDS: -6.11 Total: -109.93 kcal Atomic # 8 Polarization: -36.27 SS G_CDS: -0.10 Total: -36.37 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 2.03 Total: 45.84 kcal Total: -77.48 -0.60 -78.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118278356.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.307 kcal (2) G-P(sol) polarization free energy of solvation -77.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.079 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds