Wall clock time and date at job start Tue Mar 31 2020 03:30:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46500 * 109.47473 * 2 1 4 4 C 1.46768 * 124.34693 * 89.99967 * 3 2 1 5 5 C 1.54478 * 105.47101 * 197.02057 * 4 3 2 6 6 H 1.09004 * 110.97323 * 92.73835 * 5 4 3 7 7 C 1.52997 * 110.96957 * 216.46792 * 5 4 3 8 8 N 1.46501 * 109.47333 * 184.99971 * 7 5 4 9 9 C 1.34781 * 119.99868 * 179.97438 * 8 7 5 10 10 O 1.21275 * 120.00093 * 0.02562 * 9 8 7 11 11 C 1.50696 * 119.99587 * 180.02562 * 9 8 7 12 12 H 1.09000 * 109.47550 * 39.99499 * 11 9 8 13 13 N 1.46906 * 109.47122 * 160.00080 * 11 9 8 14 14 C 1.53012 * 109.47073 * 279.99718 * 11 9 8 15 15 C 1.52998 * 109.46982 * 175.00345 * 14 11 9 16 16 C 1.50702 * 109.46666 * 180.02562 * 15 14 11 17 17 H 1.07998 * 120.00140 * 359.97438 * 16 15 14 18 18 C 1.37882 * 119.99625 * 179.97438 * 16 15 14 19 19 N 1.31506 * 120.00135 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 119.99630 * 179.97438 * 18 16 15 21 21 H 1.48492 * 109.47246 * 0.02562 * 20 18 16 22 22 H 1.48499 * 109.46700 * 119.99955 * 20 18 16 23 23 H 1.48495 * 109.47162 * 240.00093 * 20 18 16 24 24 C 1.54636 * 101.76552 * 334.58220 * 5 4 3 25 25 C 1.34415 * 124.34942 * 269.70303 * 3 2 1 26 26 O 1.21284 * 124.94451 * 359.57140 * 25 3 2 27 27 H 1.09002 * 109.47153 * 59.99757 * 1 2 3 28 28 H 1.09001 * 109.46832 * 299.99948 * 1 2 3 29 29 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47153 * 120.00243 * 2 1 3 31 31 H 1.08998 * 109.47533 * 239.99872 * 2 1 3 32 32 H 1.08996 * 110.24443 * 316.01612 * 4 3 2 33 33 H 1.08995 * 110.24539 * 78.02084 * 4 3 2 34 34 H 1.09005 * 109.46855 * 304.99889 * 7 5 4 35 35 H 1.09003 * 109.47550 * 64.99645 * 7 5 4 36 36 H 0.96992 * 120.00076 * 359.97438 * 8 7 5 37 37 H 1.00893 * 110.99929 * 296.04568 * 13 11 9 38 38 H 1.00903 * 110.99998 * 59.99867 * 13 11 9 39 39 H 1.08995 * 109.47105 * 295.00441 * 14 11 9 40 40 H 1.08999 * 109.46572 * 55.00379 * 14 11 9 41 41 H 1.09002 * 109.46900 * 299.99920 * 15 14 11 42 42 H 1.08993 * 109.47311 * 60.00173 * 15 14 11 43 43 H 0.97001 * 120.00267 * 180.02562 * 19 18 16 44 44 H 1.08999 * 110.48236 * 143.47527 * 24 5 4 45 45 H 1.08995 * 110.48437 * 265.98705 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2945 2.1619 1.2118 5 6 2.3530 3.6345 0.7488 6 1 1.3783 4.1129 0.8455 7 6 3.4198 4.4102 1.5240 8 7 3.3666 5.8245 1.1459 9 6 4.2201 6.7045 1.7061 10 8 5.0324 6.3253 2.5230 11 6 4.1649 8.1594 1.3175 12 1 3.1249 8.4685 1.2132 13 7 4.8145 8.9689 2.3572 14 6 4.8924 8.3597 -0.0136 15 6 4.7301 9.8110 -0.4701 16 6 5.4461 10.0080 -1.7814 17 1 5.9653 9.1810 -2.2428 18 6 5.4382 11.2442 -2.3922 19 7 4.8056 12.2511 -1.8306 20 14 6.3263 11.4886 -4.0173 21 1 6.9546 10.2097 -4.4353 22 1 5.3541 11.9234 -5.0521 23 1 7.3758 12.5269 -3.8566 24 6 2.7505 3.4821 -0.7378 25 6 2.2767 2.0943 -1.1097 26 8 2.1463 1.6856 -2.2442 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5139 0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 1.4933 2.0265 1.9383 33 1 3.2501 1.8638 1.6429 34 1 3.2343 4.3129 2.5937 35 1 4.4050 4.0078 1.2881 36 1 2.7172 6.1277 0.4923 37 1 4.3143 8.9043 3.2310 38 1 5.7805 8.7013 2.4729 39 1 5.9513 8.1352 0.1137 40 1 4.4672 7.6931 -0.7638 41 1 3.6711 10.0355 -0.5974 42 1 5.1552 10.4776 0.2801 43 1 4.7997 13.1206 -2.2604 44 1 2.2491 4.2351 -1.3458 45 1 3.8317 3.5578 -0.8532 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001118278357.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:30:14 Heat of formation + Delta-G solvation = -90.269877 kcal Electronic energy + Delta-G solvation = -23849.525609 eV Core-core repulsion = 20286.980473 eV Total energy + Delta-G solvation = -3562.545135 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.92175 -39.74208 -37.13219 -35.69181 -35.12812 -33.57089 -32.80233 -30.39424 -30.08349 -28.51483 -26.94531 -25.51439 -23.70463 -23.22818 -21.39038 -20.73918 -19.90406 -19.57346 -17.42040 -17.28408 -16.72538 -16.29939 -15.89999 -15.57783 -15.47767 -15.10165 -14.53395 -14.36715 -14.23217 -14.08083 -13.81826 -13.64361 -13.47876 -12.91046 -12.74368 -12.52847 -12.34235 -12.26170 -12.02179 -11.74848 -11.55131 -11.51851 -11.39599 -10.91193 -10.69643 -10.53536 -10.17361 -10.06279 -9.81862 -9.39167 -9.17383 -9.13765 -8.99010 -8.37537 -8.22439 -5.94355 -3.96414 2.28782 2.55998 2.71609 3.15629 3.34298 3.42044 3.46017 3.89346 3.99292 4.22926 4.48856 4.50323 4.61787 4.73678 4.82791 4.87563 4.93124 4.97214 5.07992 5.12168 5.24859 5.32045 5.34611 5.41461 5.43279 5.50615 5.54490 5.68394 5.72838 5.80651 6.14871 6.32221 6.42111 6.63120 6.72622 7.07058 7.32528 7.53211 7.75334 7.77494 7.85481 7.95255 8.12157 8.24536 8.47798 9.11860 9.67044 11.16556 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.016259 B = 0.002891 C = 0.002534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1721.708321 B = 9684.172969 C =11046.832713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.121 3.879 3 N -0.622 5.622 4 C 0.112 3.888 5 C -0.113 4.113 6 H 0.100 0.900 7 C 0.130 3.870 8 N -0.731 5.731 9 C 0.484 3.516 10 O -0.553 6.553 11 C 0.078 3.922 12 H 0.098 0.902 13 N -0.807 5.807 14 C -0.095 4.095 15 C 0.031 3.969 16 C -0.522 4.522 17 H 0.052 0.948 18 C 0.057 3.943 19 N -0.893 5.893 20 Si 0.888 3.112 21 H -0.274 1.274 22 H -0.285 1.285 23 H -0.284 1.284 24 C -0.154 4.154 25 C 0.519 3.481 26 O -0.530 6.530 27 H 0.059 0.941 28 H 0.057 0.943 29 H 0.067 0.933 30 H 0.078 0.922 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.077 0.923 34 H 0.072 0.928 35 H 0.071 0.929 36 H 0.404 0.596 37 H 0.334 0.666 38 H 0.348 0.652 39 H 0.053 0.947 40 H 0.054 0.946 41 H 0.013 0.987 42 H 0.035 0.965 43 H 0.259 0.741 44 H 0.108 0.892 45 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.293 -22.538 9.531 26.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.001 4.001 3 N -0.358 5.358 4 C -0.012 4.012 5 C -0.132 4.132 6 H 0.119 0.881 7 C 0.005 3.995 8 N -0.384 5.384 9 C 0.270 3.730 10 O -0.431 6.431 11 C -0.038 4.038 12 H 0.116 0.884 13 N -0.335 5.335 14 C -0.134 4.134 15 C -0.006 4.006 16 C -0.560 4.560 17 H 0.071 0.929 18 C -0.144 4.144 19 N -0.532 5.532 20 Si 0.716 3.284 21 H -0.198 1.198 22 H -0.211 1.211 23 H -0.211 1.211 24 C -0.194 4.194 25 C 0.307 3.693 26 O -0.406 6.406 27 H 0.078 0.922 28 H 0.076 0.924 29 H 0.086 0.914 30 H 0.097 0.903 31 H 0.100 0.900 32 H 0.101 0.899 33 H 0.095 0.905 34 H 0.090 0.910 35 H 0.089 0.911 36 H 0.239 0.761 37 H 0.145 0.855 38 H 0.162 0.838 39 H 0.072 0.928 40 H 0.072 0.928 41 H 0.031 0.969 42 H 0.053 0.947 43 H 0.068 0.932 44 H 0.126 0.874 45 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -8.981 -22.292 9.027 25.672 hybrid contribution 0.213 -0.673 -0.638 0.952 sum -8.768 -22.964 8.388 25.973 Atomic orbital electron populations 1.22161 0.95674 1.02418 1.02546 1.21344 0.94433 0.81072 1.03211 1.48351 1.66167 1.14019 1.07220 1.22015 1.02153 0.89571 0.87463 1.22398 1.00761 0.95305 0.94741 0.88146 1.21246 0.98106 0.81275 0.98881 1.46128 1.38671 1.07773 1.45876 1.22786 0.79461 0.90614 0.80134 1.90650 1.37557 1.80560 1.34331 1.21854 1.01420 0.84527 0.95956 0.88397 1.58993 1.07275 1.56868 1.10341 1.21662 0.98591 1.02497 0.90613 1.19021 0.96995 0.88767 0.95859 1.21314 1.32999 0.95539 1.06150 0.92926 1.24992 0.95626 0.96185 0.97550 1.69979 1.42937 1.01345 1.38933 0.86600 0.79585 0.78116 0.84069 1.19834 1.21101 1.21065 1.22519 1.04505 0.95786 0.96608 1.20941 0.76214 0.87850 0.84316 1.90741 1.53177 1.75514 1.21146 0.92161 0.92385 0.91361 0.90310 0.89957 0.89921 0.90488 0.91023 0.91076 0.76114 0.85468 0.83803 0.92847 0.92781 0.96875 0.94677 0.93153 0.87386 0.87202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.00 10.24 37.16 0.38 -0.62 16 2 C 0.12 0.79 6.66 -4.04 -0.03 0.76 16 3 N -0.62 -4.89 2.93 -172.41 -0.51 -5.39 16 4 C 0.11 0.59 6.91 -3.12 -0.02 0.57 16 5 C -0.11 -0.68 3.16 -88.99 -0.28 -0.96 16 6 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 7 C 0.13 1.05 4.98 -4.04 -0.02 1.03 16 8 N -0.73 -7.50 5.50 -60.29 -0.33 -7.83 16 9 C 0.48 6.86 7.07 -10.99 -0.08 6.79 16 10 O -0.55 -9.42 16.25 5.56 0.09 -9.33 16 11 C 0.08 1.23 3.15 -68.86 -0.22 1.01 16 12 H 0.10 1.43 8.14 -51.93 -0.42 1.01 16 13 N -0.81 -13.00 8.44 -5.65 -0.05 -13.05 16 14 C -0.10 -1.84 4.78 -26.73 -0.13 -1.97 16 15 C 0.03 0.77 4.86 -27.88 -0.14 0.63 16 16 C -0.52 -14.59 9.11 -34.44 -0.31 -14.91 16 17 H 0.05 1.44 7.74 -52.49 -0.41 1.03 16 18 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 19 N -0.89 -26.77 13.29 55.43 0.74 -26.03 16 20 Si 0.89 21.71 29.54 -169.99 -5.02 16.69 16 21 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 22 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 23 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 24 C -0.15 -1.27 6.36 -26.73 -0.17 -1.44 16 25 C 0.52 5.60 8.02 -10.86 -0.09 5.51 16 26 O -0.53 -8.02 17.59 5.55 0.10 -7.93 16 27 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 28 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 30 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.08 0.64 7.92 -51.93 -0.41 0.23 16 32 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.08 0.36 7.89 -51.93 -0.41 -0.05 16 34 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 35 H 0.07 0.66 7.93 -51.93 -0.41 0.25 16 36 H 0.40 3.46 8.47 -40.82 -0.35 3.11 16 37 H 0.33 4.61 9.06 -39.30 -0.36 4.25 16 38 H 0.35 5.72 8.58 -39.29 -0.34 5.38 16 39 H 0.05 1.09 8.14 -51.93 -0.42 0.66 16 40 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 41 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 42 H 0.03 0.96 7.75 -51.93 -0.40 0.55 16 43 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 44 H 0.11 0.87 8.14 -51.93 -0.42 0.44 16 45 H 0.11 0.94 7.75 -51.93 -0.40 0.54 16 LS Contribution 374.71 15.07 5.65 5.65 Total: -1.00 -35.46 374.71 -8.22 -43.68 By element: Atomic # 1 Polarization: 13.28 SS G_CDS: -7.69 Total: 5.58 kcal Atomic # 6 Polarization: -0.85 SS G_CDS: -1.20 Total: -2.04 kcal Atomic # 7 Polarization: -52.16 SS G_CDS: -0.15 Total: -52.31 kcal Atomic # 8 Polarization: -17.44 SS G_CDS: 0.19 Total: -17.25 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -35.46 -8.22 -43.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118278357.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.589 kcal (2) G-P(sol) polarization free energy of solvation -35.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.680 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds