Wall clock time and date at job start Tue Mar 31 2020 03:30:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46500 * 109.47473 * 2 1 4 4 C 1.46768 * 124.34693 * 89.99967 * 3 2 1 5 5 C 1.54478 * 105.47101 * 197.02057 * 4 3 2 6 6 H 1.09004 * 110.97323 * 92.73835 * 5 4 3 7 7 C 1.52997 * 110.96957 * 216.46792 * 5 4 3 8 8 N 1.46501 * 109.47333 * 184.99971 * 7 5 4 9 9 C 1.34781 * 119.99868 * 179.97438 * 8 7 5 10 10 O 1.21275 * 120.00093 * 0.02562 * 9 8 7 11 11 C 1.50696 * 119.99587 * 180.02562 * 9 8 7 12 12 H 1.09000 * 109.47550 * 39.99499 * 11 9 8 13 13 N 1.46906 * 109.47122 * 160.00080 * 11 9 8 14 14 C 1.53012 * 109.47073 * 279.99718 * 11 9 8 15 15 C 1.52998 * 109.46982 * 175.00345 * 14 11 9 16 16 C 1.50702 * 109.46666 * 180.02562 * 15 14 11 17 17 H 1.07998 * 120.00140 * 359.97438 * 16 15 14 18 18 C 1.37882 * 119.99625 * 179.97438 * 16 15 14 19 19 N 1.31506 * 120.00135 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 119.99630 * 179.97438 * 18 16 15 21 21 H 1.48492 * 109.47246 * 0.02562 * 20 18 16 22 22 H 1.48499 * 109.46700 * 119.99955 * 20 18 16 23 23 H 1.48495 * 109.47162 * 240.00093 * 20 18 16 24 24 C 1.54636 * 101.76552 * 334.58220 * 5 4 3 25 25 C 1.34415 * 124.34942 * 269.70303 * 3 2 1 26 26 O 1.21284 * 124.94451 * 359.57140 * 25 3 2 27 27 H 1.09002 * 109.47153 * 59.99757 * 1 2 3 28 28 H 1.09001 * 109.46832 * 299.99948 * 1 2 3 29 29 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47153 * 120.00243 * 2 1 3 31 31 H 1.08998 * 109.47533 * 239.99872 * 2 1 3 32 32 H 1.08996 * 110.24443 * 316.01612 * 4 3 2 33 33 H 1.08995 * 110.24539 * 78.02084 * 4 3 2 34 34 H 1.09005 * 109.46855 * 304.99889 * 7 5 4 35 35 H 1.09003 * 109.47550 * 64.99645 * 7 5 4 36 36 H 0.96992 * 120.00076 * 359.97438 * 8 7 5 37 37 H 1.00893 * 110.99929 * 296.04568 * 13 11 9 38 38 H 1.00903 * 110.99998 * 59.99867 * 13 11 9 39 39 H 1.08995 * 109.47105 * 295.00441 * 14 11 9 40 40 H 1.08999 * 109.46572 * 55.00379 * 14 11 9 41 41 H 1.09002 * 109.46900 * 299.99920 * 15 14 11 42 42 H 1.08993 * 109.47311 * 60.00173 * 15 14 11 43 43 H 0.97001 * 120.00267 * 180.02562 * 19 18 16 44 44 H 1.08999 * 110.48236 * 143.47527 * 24 5 4 45 45 H 1.08995 * 110.48437 * 265.98705 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2945 2.1619 1.2118 5 6 2.3530 3.6345 0.7488 6 1 1.3783 4.1129 0.8455 7 6 3.4198 4.4102 1.5240 8 7 3.3666 5.8245 1.1459 9 6 4.2201 6.7045 1.7061 10 8 5.0324 6.3253 2.5230 11 6 4.1649 8.1594 1.3175 12 1 3.1249 8.4685 1.2132 13 7 4.8145 8.9689 2.3572 14 6 4.8924 8.3597 -0.0136 15 6 4.7301 9.8110 -0.4701 16 6 5.4461 10.0080 -1.7814 17 1 5.9653 9.1810 -2.2428 18 6 5.4382 11.2442 -2.3922 19 7 4.8056 12.2511 -1.8306 20 14 6.3263 11.4886 -4.0173 21 1 6.9546 10.2097 -4.4353 22 1 5.3541 11.9234 -5.0521 23 1 7.3758 12.5269 -3.8566 24 6 2.7505 3.4821 -0.7378 25 6 2.2767 2.0943 -1.1097 26 8 2.1463 1.6856 -2.2442 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5139 0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 1.4933 2.0265 1.9383 33 1 3.2501 1.8638 1.6429 34 1 3.2343 4.3129 2.5937 35 1 4.4050 4.0078 1.2881 36 1 2.7172 6.1277 0.4923 37 1 4.3143 8.9043 3.2310 38 1 5.7805 8.7013 2.4729 39 1 5.9513 8.1352 0.1137 40 1 4.4672 7.6931 -0.7638 41 1 3.6711 10.0355 -0.5974 42 1 5.1552 10.4776 0.2801 43 1 4.7997 13.1206 -2.2604 44 1 2.2491 4.2351 -1.3458 45 1 3.8317 3.5578 -0.8532 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001118278357.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:30:13 Heat of formation + Delta-G solvation = -117.479466 kcal Electronic energy + Delta-G solvation = -23850.705505 eV Core-core repulsion = 20286.980473 eV Total energy + Delta-G solvation = -3563.725032 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.64307 -40.84316 -37.98536 -36.82334 -36.27699 -34.78364 -34.30662 -31.89224 -31.02100 -29.20671 -28.24137 -26.72634 -24.90439 -24.10060 -22.31775 -22.02747 -21.06172 -20.36415 -18.65382 -18.08591 -17.99309 -17.57161 -16.99616 -16.70940 -16.40692 -16.27113 -16.03890 -15.40484 -15.05760 -14.91386 -14.74226 -14.67514 -14.27524 -14.22095 -13.83177 -13.57452 -13.41785 -13.33630 -13.12887 -12.82242 -12.79210 -12.49284 -12.32828 -12.19993 -12.06199 -11.96477 -11.72241 -11.61466 -11.21094 -10.95312 -10.89839 -10.47875 -10.07969 -9.77378 -9.56416 -8.12891 -6.22379 1.41804 1.42882 1.48737 1.54578 1.57865 1.94606 2.27845 2.45493 3.20476 3.25017 3.40380 3.64167 3.68731 3.88822 4.01779 4.11426 4.16874 4.24430 4.30205 4.37838 4.47666 4.55855 4.61041 4.66851 4.69888 4.82968 4.84115 4.88048 4.95596 4.99639 5.12953 5.25586 5.29895 5.44565 5.59093 5.59868 5.88152 6.01735 6.06111 6.16150 6.32757 6.49909 6.59619 6.97244 7.09241 7.20322 7.45732 8.98418 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.016259 B = 0.002891 C = 0.002534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1721.708321 B = 9684.172969 C =11046.832713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.114 3.886 3 N -0.617 5.617 4 C 0.110 3.890 5 C -0.096 4.096 6 H 0.119 0.881 7 C 0.131 3.869 8 N -0.716 5.716 9 C 0.491 3.509 10 O -0.582 6.582 11 C 0.084 3.916 12 H 0.111 0.889 13 N -0.821 5.821 14 C -0.082 4.082 15 C 0.038 3.962 16 C -0.541 4.541 17 H 0.055 0.945 18 C 0.002 3.998 19 N -0.929 5.929 20 Si 0.957 3.043 21 H -0.265 1.265 22 H -0.278 1.278 23 H -0.281 1.281 24 C -0.153 4.153 25 C 0.507 3.493 26 O -0.586 6.586 27 H 0.033 0.967 28 H 0.070 0.930 29 H 0.082 0.918 30 H 0.109 0.891 31 H 0.062 0.938 32 H 0.111 0.889 33 H 0.089 0.911 34 H 0.083 0.917 35 H 0.063 0.937 36 H 0.415 0.585 37 H 0.347 0.653 38 H 0.345 0.655 39 H 0.041 0.959 40 H 0.069 0.931 41 H -0.005 1.005 42 H 0.005 0.995 43 H 0.261 0.739 44 H 0.108 0.892 45 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.883 -23.924 10.410 27.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.007 4.007 3 N -0.350 5.350 4 C -0.012 4.012 5 C -0.115 4.115 6 H 0.137 0.863 7 C 0.007 3.993 8 N -0.368 5.368 9 C 0.276 3.724 10 O -0.462 6.462 11 C -0.032 4.032 12 H 0.129 0.871 13 N -0.350 5.350 14 C -0.121 4.121 15 C 0.001 3.999 16 C -0.579 4.579 17 H 0.073 0.927 18 C -0.196 4.196 19 N -0.570 5.570 20 Si 0.782 3.218 21 H -0.189 1.189 22 H -0.204 1.204 23 H -0.207 1.207 24 C -0.193 4.193 25 C 0.296 3.704 26 O -0.467 6.467 27 H 0.052 0.948 28 H 0.089 0.911 29 H 0.101 0.899 30 H 0.127 0.873 31 H 0.081 0.919 32 H 0.129 0.871 33 H 0.107 0.893 34 H 0.101 0.899 35 H 0.081 0.919 36 H 0.251 0.749 37 H 0.160 0.840 38 H 0.158 0.842 39 H 0.059 0.941 40 H 0.087 0.913 41 H 0.013 0.987 42 H 0.023 0.977 43 H 0.070 0.930 44 H 0.127 0.873 45 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -9.607 -23.711 9.939 27.446 hybrid contribution 0.371 -0.276 -0.867 0.982 sum -9.236 -23.987 9.073 27.258 Atomic orbital electron populations 1.22107 0.95026 1.03232 1.01803 1.21519 0.94957 0.80482 1.03738 1.48512 1.64644 1.14495 1.07323 1.22234 1.03953 0.88333 0.86687 1.22299 1.00752 0.95861 0.92551 0.86313 1.21349 0.98423 0.79714 0.99764 1.46007 1.37517 1.08377 1.44899 1.22230 0.79802 0.90167 0.80201 1.90645 1.38948 1.80748 1.35835 1.21643 1.01359 0.86195 0.93990 0.87077 1.58961 1.07377 1.57447 1.11247 1.21388 0.98585 0.98941 0.93154 1.18837 0.95074 0.91823 0.94167 1.21776 1.33033 0.95752 1.07333 0.92705 1.25873 0.96451 0.96004 1.01285 1.70100 1.44341 1.01869 1.40690 0.85526 0.78395 0.78261 0.79612 1.18901 1.20398 1.20715 1.22517 1.04139 0.94406 0.98275 1.21395 0.75868 0.88973 0.84154 1.90702 1.55846 1.76755 1.23395 0.94800 0.91060 0.89875 0.87293 0.91921 0.87103 0.89272 0.89929 0.91908 0.74883 0.83984 0.84196 0.94061 0.91290 0.98667 0.97651 0.92974 0.87329 0.87647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.65 10.24 71.98 0.74 -0.92 16 2 C 0.11 1.30 6.66 86.38 0.57 1.87 16 3 N -0.62 -8.58 2.93 -817.99 -2.40 -10.98 16 4 C 0.11 0.79 6.91 86.83 0.60 1.39 16 5 C -0.10 -0.86 3.16 -9.74 -0.03 -0.89 16 6 H 0.12 0.73 8.14 -2.38 -0.02 0.71 16 7 C 0.13 1.74 4.98 86.38 0.43 2.17 16 8 N -0.72 -12.85 5.50 -463.06 -2.55 -15.39 16 9 C 0.49 13.04 7.07 87.66 0.62 13.66 16 10 O -0.58 -18.91 16.25 -3.02 -0.05 -18.96 16 11 C 0.08 2.55 3.15 44.17 0.14 2.69 16 12 H 0.11 3.07 8.14 -2.39 -0.02 3.05 16 13 N -0.82 -26.20 8.44 -171.78 -1.45 -27.65 16 14 C -0.08 -3.15 4.78 30.60 0.15 -3.01 16 15 C 0.04 1.94 4.86 29.85 0.15 2.09 16 16 C -0.54 -30.43 9.11 25.60 0.23 -30.19 16 17 H 0.05 2.99 7.74 -2.91 -0.02 2.96 16 18 C 0.00 0.09 5.46 84.66 0.46 0.55 16 19 N -0.93 -56.44 13.29 21.45 0.28 -56.15 16 20 Si 0.96 44.54 29.54 68.60 2.03 46.57 16 21 H -0.26 -11.84 7.11 99.48 0.71 -11.13 16 22 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 23 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 24 C -0.15 -2.32 6.36 30.59 0.19 -2.13 16 25 C 0.51 10.76 8.02 87.90 0.71 11.47 16 26 O -0.59 -18.46 17.59 -3.04 -0.05 -18.51 16 27 H 0.03 0.52 8.14 -2.39 -0.02 0.50 16 28 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 29 H 0.08 0.59 8.14 -2.38 -0.02 0.57 16 30 H 0.11 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.06 0.97 7.92 -2.39 -0.02 0.95 16 32 H 0.11 0.28 8.14 -2.39 -0.02 0.26 16 33 H 0.09 0.50 7.89 -2.39 -0.02 0.48 16 34 H 0.08 1.02 8.14 -2.38 -0.02 1.00 16 35 H 0.06 1.01 7.93 -2.39 -0.02 0.99 16 36 H 0.41 5.91 8.47 -92.71 -0.79 5.13 16 37 H 0.35 9.31 9.06 -89.70 -0.81 8.50 16 38 H 0.34 11.35 8.58 -89.69 -0.77 10.58 16 39 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 40 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 41 H -0.01 -0.27 8.14 -2.39 -0.02 -0.29 16 42 H 0.01 0.29 7.75 -2.39 -0.02 0.27 16 43 H 0.26 14.93 8.31 -92.71 -0.77 14.16 16 44 H 0.11 1.62 8.14 -2.39 -0.02 1.61 16 45 H 0.11 1.70 7.75 -2.39 -0.02 1.69 16 Total: -1.00 -78.67 374.71 -0.60 -79.26 By element: Atomic # 1 Polarization: 24.43 SS G_CDS: -1.37 Total: 23.07 kcal Atomic # 6 Polarization: -6.21 SS G_CDS: 4.96 Total: -1.25 kcal Atomic # 7 Polarization: -104.07 SS G_CDS: -6.11 Total: -110.18 kcal Atomic # 8 Polarization: -37.37 SS G_CDS: -0.10 Total: -37.47 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 2.03 Total: 46.57 kcal Total: -78.67 -0.60 -79.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118278357.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.218 kcal (2) G-P(sol) polarization free energy of solvation -78.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds