Wall clock time and date at job start Tue Mar 31 2020 03:30:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46502 * 109.47195 * 2 1 4 4 C 1.46767 * 124.35013 * 269.95225 * 3 2 1 5 5 C 1.54477 * 105.47650 * 197.03724 * 4 3 2 6 6 H 1.08997 * 111.00314 * 216.45458 * 5 4 3 7 7 C 1.52999 * 110.97235 * 92.70113 * 5 4 3 8 8 N 1.46497 * 109.46992 * 181.16830 * 7 5 4 9 9 C 1.34777 * 119.99525 * 179.97438 * 8 7 5 10 10 O 1.21283 * 120.00463 * 0.02562 * 9 8 7 11 11 C 1.50700 * 119.99675 * 179.72583 * 9 8 7 12 12 H 1.08997 * 109.47478 * 40.27795 * 11 9 8 13 13 N 1.46905 * 109.47232 * 160.27974 * 11 9 8 14 14 C 1.53001 * 109.47277 * 280.27534 * 11 9 8 15 15 C 1.52996 * 109.47345 * 174.99661 * 14 11 9 16 16 C 1.50705 * 109.47087 * 179.97438 * 15 14 11 17 17 H 1.07992 * 120.00059 * 0.02562 * 16 15 14 18 18 C 1.37882 * 119.99891 * 180.02562 * 16 15 14 19 19 N 1.31509 * 119.99925 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99933 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.46885 * 59.99873 * 20 18 16 22 22 H 1.48494 * 109.47129 * 179.97438 * 20 18 16 23 23 H 1.48498 * 109.46852 * 299.99974 * 20 18 16 24 24 C 1.54634 * 101.75961 * 334.58311 * 5 4 3 25 25 C 1.34417 * 124.34953 * 89.97146 * 3 2 1 26 26 O 1.21282 * 124.94335 * 359.54089 * 25 3 2 27 27 H 1.08996 * 109.46737 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47279 * 300.00167 * 1 2 3 29 29 H 1.08995 * 109.46920 * 59.99992 * 1 2 3 30 30 H 1.08999 * 109.47279 * 239.99833 * 2 1 3 31 31 H 1.09007 * 109.47195 * 119.99691 * 2 1 3 32 32 H 1.09004 * 110.24553 * 78.03205 * 4 3 2 33 33 H 1.09003 * 110.24086 * 316.03977 * 4 3 2 34 34 H 1.08995 * 109.46838 * 61.16718 * 7 5 4 35 35 H 1.09001 * 109.46617 * 301.17053 * 7 5 4 36 36 H 0.97000 * 120.00580 * 0.02562 * 8 7 5 37 37 H 1.00900 * 110.99461 * 296.04856 * 13 11 9 38 38 H 1.00898 * 110.99843 * 59.99824 * 13 11 9 39 39 H 1.09000 * 109.47456 * 295.00621 * 14 11 9 40 40 H 1.09003 * 109.46674 * 54.99990 * 14 11 9 41 41 H 1.08994 * 109.47734 * 300.00421 * 15 14 11 42 42 H 1.09008 * 109.46545 * 60.00669 * 15 14 11 43 43 H 0.96995 * 120.00318 * 180.02562 * 19 18 16 44 44 H 1.08999 * 110.48215 * 143.48325 * 24 5 4 45 45 H 1.09005 * 110.48381 * 266.11714 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2954 2.1617 -1.2117 5 6 3.1755 3.3436 -0.7485 6 1 2.9329 4.2514 -1.3010 7 6 4.6616 3.0052 -0.8824 8 7 5.4644 4.1355 -0.4091 9 6 6.8100 4.0629 -0.4326 10 8 7.3563 3.0621 -0.8459 11 6 7.6359 5.2281 0.0485 12 1 7.1764 5.6559 0.9395 13 7 8.9928 4.7666 0.3708 14 6 7.7063 6.2912 -1.0496 15 6 8.4380 7.5254 -0.5184 16 6 8.5079 8.5723 -1.6002 17 1 8.0734 8.3771 -2.5694 18 6 9.1264 9.7794 -1.3525 19 7 9.6559 10.0170 -0.1724 20 14 9.2124 11.0773 -2.6932 21 1 7.8367 11.4567 -3.1037 22 1 9.9227 12.2752 -2.1777 23 1 9.9457 10.5320 -3.8637 24 6 2.7696 3.4753 0.7378 25 6 2.2707 2.0965 1.1098 26 8 2.1197 1.6950 2.2442 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 1.8934 -0.5138 0.8901 32 1 1.3650 2.5306 -1.6436 33 1 2.8336 1.5524 -1.9379 34 1 4.8960 2.8055 -1.9279 35 1 4.8884 2.1226 -0.2842 36 1 5.0276 4.9359 -0.0782 37 1 8.9790 4.1111 1.1378 38 1 9.4403 4.3655 -0.4397 39 1 8.2448 5.8912 -1.9087 40 1 6.6964 6.5694 -1.3512 41 1 7.8995 7.9255 0.3406 42 1 9.4479 7.2472 -0.2168 43 1 10.0907 10.8662 0.0021 44 1 3.6325 3.7459 1.3463 45 1 1.9748 4.2124 0.8523 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001118278358.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:30:15 Heat of formation + Delta-G solvation = -116.823362 kcal Electronic energy + Delta-G solvation = -23936.040335 eV Core-core repulsion = 20372.343754 eV Total energy + Delta-G solvation = -3563.696581 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.72204 -40.84729 -37.98142 -36.82652 -36.27054 -34.78123 -34.30439 -31.89813 -30.89445 -29.20007 -28.28417 -26.84398 -24.92964 -24.23363 -22.33244 -21.92417 -21.15083 -20.32807 -18.69118 -18.04630 -17.97529 -17.52927 -16.83670 -16.79748 -16.57496 -16.39085 -15.99624 -15.39349 -15.06022 -14.93245 -14.73342 -14.53873 -14.25208 -14.15674 -14.00212 -13.77852 -13.42216 -13.38224 -12.94428 -12.74904 -12.66616 -12.50520 -12.44082 -12.22905 -12.13208 -11.92863 -11.72735 -11.61057 -11.22686 -10.97670 -10.88202 -10.45723 -10.14111 -9.78186 -9.59078 -8.10828 -6.21037 1.44137 1.46928 1.50084 1.53290 1.55243 2.00903 2.19903 2.47207 3.22283 3.33419 3.41730 3.59622 3.61374 3.85868 3.95016 4.10158 4.14786 4.24669 4.34691 4.36438 4.45781 4.57863 4.62208 4.66512 4.73477 4.81890 4.82795 4.86225 4.95205 4.98995 5.10067 5.24369 5.29937 5.40620 5.58542 5.60554 5.88345 6.02256 6.08344 6.12579 6.33276 6.46471 6.54662 6.98230 7.10339 7.16860 7.47049 9.00140 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.024700 B = 0.002572 C = 0.002485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1133.318507 B =10882.053903 C =11265.573245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.114 3.886 3 N -0.618 5.618 4 C 0.109 3.891 5 C -0.099 4.099 6 H 0.141 0.859 7 C 0.126 3.874 8 N -0.714 5.714 9 C 0.489 3.511 10 O -0.584 6.584 11 C 0.083 3.917 12 H 0.110 0.890 13 N -0.821 5.821 14 C -0.080 4.080 15 C 0.038 3.962 16 C -0.542 4.542 17 H 0.058 0.942 18 C -0.001 4.001 19 N -0.931 5.931 20 Si 0.960 3.040 21 H -0.264 1.264 22 H -0.287 1.287 23 H -0.271 1.271 24 C -0.151 4.151 25 C 0.503 3.497 26 O -0.589 6.589 27 H 0.081 0.919 28 H 0.034 0.966 29 H 0.071 0.929 30 H 0.106 0.894 31 H 0.059 0.941 32 H 0.107 0.893 33 H 0.099 0.901 34 H 0.076 0.924 35 H 0.045 0.955 36 H 0.416 0.584 37 H 0.345 0.655 38 H 0.345 0.655 39 H 0.042 0.958 40 H 0.073 0.927 41 H -0.006 1.006 42 H 0.003 0.997 43 H 0.261 0.739 44 H 0.096 0.904 45 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.416 -17.195 -3.934 26.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.008 4.008 3 N -0.352 5.352 4 C -0.013 4.013 5 C -0.118 4.118 6 H 0.158 0.842 7 C 0.003 3.997 8 N -0.367 5.367 9 C 0.274 3.726 10 O -0.465 6.465 11 C -0.032 4.032 12 H 0.127 0.873 13 N -0.350 5.350 14 C -0.118 4.118 15 C 0.001 3.999 16 C -0.580 4.580 17 H 0.076 0.924 18 C -0.198 4.198 19 N -0.571 5.571 20 Si 0.785 3.215 21 H -0.189 1.189 22 H -0.212 1.212 23 H -0.196 1.196 24 C -0.191 4.191 25 C 0.293 3.707 26 O -0.470 6.470 27 H 0.100 0.900 28 H 0.053 0.947 29 H 0.090 0.910 30 H 0.124 0.876 31 H 0.077 0.923 32 H 0.125 0.875 33 H 0.117 0.883 34 H 0.094 0.906 35 H 0.064 0.936 36 H 0.254 0.746 37 H 0.158 0.842 38 H 0.158 0.842 39 H 0.061 0.939 40 H 0.092 0.908 41 H 0.012 0.988 42 H 0.021 0.979 43 H 0.070 0.930 44 H 0.115 0.885 45 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -19.895 -17.316 -3.400 26.593 hybrid contribution -0.083 -0.009 -0.210 0.226 sum -19.978 -17.325 -3.611 26.689 Atomic orbital electron populations 1.22088 0.94833 1.03197 1.01853 1.21504 0.95127 0.80687 1.03466 1.48540 1.64770 1.14235 1.07620 1.22322 1.00547 0.91960 0.86454 1.22429 0.92358 1.01442 0.95578 0.84162 1.21379 0.89755 0.88543 1.00062 1.46000 1.05566 1.20045 1.65089 1.22323 0.83666 0.89489 0.77116 1.90644 1.72736 1.34397 1.48686 1.21670 0.88803 0.92291 1.00474 0.87266 1.58979 1.16262 1.47126 1.12625 1.21383 1.00892 0.94126 0.95435 1.18837 0.95222 0.91251 0.94637 1.21715 1.36182 1.00603 0.99464 0.92367 1.25923 0.95235 1.00930 0.97730 1.70101 1.38747 1.24792 1.23497 0.85589 0.78691 0.78077 0.79191 1.18878 1.21247 1.19639 1.22513 1.04225 0.94705 0.97655 1.21514 0.76150 0.88979 0.84090 1.90695 1.56213 1.76692 1.23442 0.90016 0.94660 0.90972 0.87628 0.92258 0.87525 0.88314 0.90594 0.93631 0.74644 0.84214 0.84160 0.93918 0.90816 0.98758 0.97899 0.93020 0.88515 0.85041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.67 10.24 71.98 0.74 -0.93 16 2 C 0.11 1.40 6.65 86.38 0.57 1.97 16 3 N -0.62 -8.73 2.93 -817.97 -2.40 -11.13 16 4 C 0.11 0.75 6.90 86.83 0.60 1.35 16 5 C -0.10 -0.84 3.22 -9.74 -0.03 -0.87 16 6 H 0.14 0.49 8.14 -2.39 -0.02 0.47 16 7 C 0.13 2.01 5.02 86.38 0.43 2.44 16 8 N -0.71 -14.02 5.11 -463.07 -2.37 -16.38 16 9 C 0.49 13.90 7.07 87.66 0.62 14.52 16 10 O -0.58 -20.40 16.25 -3.04 -0.05 -20.45 16 11 C 0.08 2.63 3.15 44.17 0.14 2.77 16 12 H 0.11 3.19 8.14 -2.39 -0.02 3.17 16 13 N -0.82 -27.50 8.44 -171.79 -1.45 -28.95 16 14 C -0.08 -3.05 4.78 30.59 0.15 -2.90 16 15 C 0.04 1.91 4.86 29.85 0.15 2.06 16 16 C -0.54 -30.00 9.11 25.60 0.23 -29.77 16 17 H 0.06 3.07 7.74 -2.91 -0.02 3.05 16 18 C 0.00 -0.03 5.46 84.66 0.46 0.43 16 19 N -0.93 -56.37 13.29 21.45 0.28 -56.08 16 20 Si 0.96 43.64 29.54 68.60 2.03 45.67 16 21 H -0.26 -11.34 7.11 99.48 0.71 -10.63 16 22 H -0.29 -12.90 7.11 99.48 0.71 -12.19 16 23 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 24 C -0.15 -1.95 6.24 30.59 0.19 -1.76 16 25 C 0.50 10.43 8.02 87.90 0.71 11.14 16 26 O -0.59 -18.36 17.60 -3.04 -0.05 -18.41 16 27 H 0.08 0.61 8.14 -2.39 -0.02 0.60 16 28 H 0.03 0.54 8.14 -2.39 -0.02 0.52 16 29 H 0.07 0.54 8.14 -2.39 -0.02 0.53 16 30 H 0.11 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.06 1.00 7.93 -2.38 -0.02 0.98 16 32 H 0.11 0.26 8.14 -2.38 -0.02 0.24 16 33 H 0.10 0.47 7.91 -2.39 -0.02 0.45 16 34 H 0.08 1.23 8.14 -2.39 -0.02 1.22 16 35 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 36 H 0.42 6.21 8.20 -92.71 -0.76 5.45 16 37 H 0.34 10.08 9.06 -89.69 -0.81 9.27 16 38 H 0.34 11.81 8.58 -89.70 -0.77 11.04 16 39 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 40 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 41 H -0.01 -0.32 8.14 -2.39 -0.02 -0.34 16 42 H 0.00 0.15 7.75 -2.38 -0.02 0.13 16 43 H 0.26 14.96 8.31 -92.71 -0.77 14.19 16 44 H 0.10 1.47 7.40 -2.39 -0.02 1.45 16 45 H 0.13 1.16 8.14 -2.38 -0.02 1.14 16 Total: -1.00 -79.67 373.90 -0.39 -80.06 By element: Atomic # 1 Polarization: 26.58 SS G_CDS: -1.34 Total: 25.24 kcal Atomic # 6 Polarization: -4.51 SS G_CDS: 4.95 Total: 0.45 kcal Atomic # 7 Polarization: -106.62 SS G_CDS: -5.93 Total: -112.55 kcal Atomic # 8 Polarization: -38.76 SS G_CDS: -0.10 Total: -38.87 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 2.03 Total: 45.67 kcal Total: -79.67 -0.39 -80.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118278358.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.761 kcal (2) G-P(sol) polarization free energy of solvation -79.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.062 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds