Wall clock time and date at job start Tue Mar 31 2020 03:21:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.47437 * 2 1 4 4 N 1.46499 * 109.47368 * 120.00680 * 2 1 3 5 5 C 1.34775 * 119.99299 * 274.99907 * 4 2 1 6 6 O 1.21276 * 120.00699 * 359.97438 * 5 4 2 7 7 C 1.50709 * 119.99599 * 179.97438 * 5 4 2 8 8 C 1.55238 * 110.58096 * 294.87565 * 7 5 4 9 9 C 1.54894 * 102.58338 * 203.33573 * 8 7 5 10 10 C 1.54266 * 104.31305 * 37.93170 * 9 8 7 11 11 C 1.53869 * 106.60031 * 336.32486 * 10 9 8 12 12 C 1.50703 * 109.46870 * 240.00362 * 2 1 3 13 13 O 1.21284 * 119.99902 * 239.99875 * 12 2 1 14 14 N 1.34775 * 120.00229 * 60.00016 * 12 2 1 15 15 C 1.46499 * 120.00149 * 179.97438 * 14 12 2 16 16 C 1.53003 * 109.46920 * 180.02562 * 15 14 12 17 17 N 1.46508 * 109.47021 * 180.02562 * 16 15 14 18 18 C 1.36929 * 119.99922 * 179.97438 * 17 16 15 19 19 H 1.07998 * 120.00498 * 359.97438 * 18 17 16 20 20 C 1.38812 * 119.99979 * 180.02562 * 18 17 16 21 21 N 1.31623 * 119.99956 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 120.00130 * 180.02562 * 20 18 17 23 23 H 1.48505 * 109.47444 * 89.99912 * 22 20 18 24 24 H 1.48506 * 109.47179 * 209.99290 * 22 20 18 25 25 H 1.48497 * 109.47280 * 329.99335 * 22 20 18 26 26 H 1.08998 * 109.47437 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.46957 * 300.00054 * 1 2 3 28 28 H 1.09000 * 109.47138 * 59.99601 * 1 2 3 29 29 H 0.96998 * 120.00025 * 94.99524 * 4 2 1 30 30 H 1.09006 * 110.43428 * 57.45967 * 7 5 4 31 31 H 1.08996 * 110.89448 * 85.05138 * 8 7 5 32 32 H 1.08993 * 110.76342 * 321.56803 * 8 7 5 33 33 H 1.09002 * 110.48891 * 279.18596 * 9 8 7 34 34 H 1.08998 * 110.48494 * 156.67683 * 9 8 7 35 35 H 1.09001 * 110.03084 * 95.60669 * 10 9 8 36 36 H 1.08996 * 110.03108 * 216.98559 * 10 9 8 37 37 H 1.08999 * 110.04012 * 119.28327 * 11 10 9 38 38 H 1.09006 * 110.02998 * 240.67078 * 11 10 9 39 39 H 0.97003 * 119.99914 * 0.02562 * 14 12 2 40 40 H 1.08998 * 109.46917 * 300.00108 * 15 14 12 41 41 H 1.09004 * 109.47148 * 60.00339 * 15 14 12 42 42 H 1.09003 * 109.46798 * 299.99536 * 16 15 14 43 43 H 1.08991 * 109.47340 * 59.99984 * 16 15 14 44 44 H 0.97003 * 119.99836 * 359.97438 * 17 16 15 45 45 H 0.97004 * 120.00151 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 2.1471 -0.0184 2.3570 6 8 1.8591 1.1584 2.4115 7 6 2.6490 -0.7290 3.5876 8 6 1.6423 -1.8229 4.0348 9 6 1.9740 -1.9925 5.5383 10 6 2.2812 -0.5612 6.0249 11 6 2.7103 0.2421 4.7846 12 6 2.0323 -0.7104 -1.2306 13 8 2.7295 -1.6965 -1.1193 14 7 1.7067 -0.2499 -2.4546 15 6 2.1954 -0.9401 -3.6508 16 6 1.6858 -0.2184 -4.9000 17 7 2.1740 -0.9090 -6.0963 18 6 1.8431 -0.4411 -7.3399 19 1 1.2218 0.4367 -7.4390 20 6 2.3053 -1.0958 -8.4734 21 7 3.0620 -2.1659 -8.3527 22 14 1.8544 -0.4572 -10.1699 23 1 2.8787 0.5196 -10.6195 24 1 1.7984 -1.5913 -11.1270 25 1 0.5279 0.2078 -10.1121 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 2.2490 -1.6319 1.1524 30 1 3.6296 -1.1669 3.4009 31 1 1.8139 -2.7536 3.4940 32 1 0.6159 -1.4811 3.9018 33 1 2.8456 -2.6344 5.6666 34 1 1.1177 -2.4020 6.0740 35 1 1.3890 -0.1175 6.4668 36 1 3.0894 -0.5808 6.7560 37 1 2.0264 1.0757 4.6246 38 1 3.7271 0.6132 4.9135 39 1 1.1493 0.5391 -2.5436 40 1 3.2854 -0.9397 -3.6507 41 1 1.8324 -1.9679 -3.6511 42 1 0.5958 -0.2185 -4.9004 43 1 2.0490 0.8092 -4.8996 44 1 2.7317 -1.6977 -6.0074 45 1 3.3853 -2.6232 -9.1448 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001127972740.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:21:19 Heat of formation + Delta-G solvation = -108.056658 kcal Electronic energy + Delta-G solvation = -23496.582297 eV Core-core repulsion = 19933.265869 eV Total energy + Delta-G solvation = -3563.316428 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.62678 -40.56260 -38.13679 -37.38415 -36.07203 -35.59377 -33.31097 -32.15155 -29.92735 -29.54771 -29.18293 -26.12745 -25.10595 -23.28320 -22.83575 -21.48077 -21.23360 -20.72798 -19.38755 -18.92205 -17.84236 -17.49206 -16.87482 -16.62561 -16.55343 -16.29113 -15.88160 -15.58562 -15.38226 -15.14582 -14.85773 -14.53430 -14.33115 -14.25201 -13.82396 -13.38773 -13.09620 -13.04303 -12.87375 -12.72298 -12.64257 -12.52654 -12.19357 -12.08684 -12.06226 -11.97727 -11.86878 -11.68885 -11.28908 -11.08483 -10.99633 -10.84407 -10.29934 -10.19070 -9.06708 -7.97344 -5.28482 1.41056 1.48411 1.50659 1.53484 1.59116 1.73805 2.31503 2.57709 3.37045 3.43680 3.53119 3.63074 3.80743 3.97474 4.00444 4.05145 4.16146 4.22092 4.24139 4.47780 4.53189 4.57220 4.58896 4.62091 4.64531 4.76641 4.80495 4.96330 4.99349 5.10943 5.12763 5.14876 5.20720 5.26258 5.29544 5.30134 5.41204 5.48776 5.49107 6.23610 6.38372 6.43892 7.04692 7.14269 7.30062 8.02009 8.24492 9.26152 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.048983 B = 0.002062 C = 0.002027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 571.494208 B =13575.023526 C =13813.315698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.130 3.870 3 H 0.115 0.885 4 N -0.709 5.709 5 C 0.523 3.477 6 O -0.575 6.575 7 C -0.113 4.113 8 C -0.111 4.111 9 C -0.121 4.121 10 C -0.123 4.123 11 C -0.114 4.114 12 C 0.511 3.489 13 O -0.573 6.573 14 N -0.703 5.703 15 C 0.128 3.872 16 C 0.147 3.853 17 N -0.747 5.747 18 C -0.248 4.248 19 H 0.083 0.917 20 C -0.077 4.077 21 N -0.970 5.970 22 Si 0.979 3.021 23 H -0.287 1.287 24 H -0.296 1.296 25 H -0.266 1.266 26 H 0.066 0.934 27 H 0.071 0.929 28 H 0.092 0.908 29 H 0.414 0.586 30 H 0.115 0.885 31 H 0.087 0.913 32 H 0.065 0.935 33 H 0.078 0.922 34 H 0.076 0.924 35 H 0.064 0.936 36 H 0.075 0.925 37 H 0.062 0.938 38 H 0.068 0.932 39 H 0.418 0.582 40 H 0.054 0.946 41 H 0.059 0.941 42 H 0.040 0.960 43 H 0.037 0.963 44 H 0.374 0.626 45 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.067 3.029 29.245 29.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.022 3.978 3 H 0.133 0.867 4 N -0.362 5.362 5 C 0.312 3.688 6 O -0.454 6.454 7 C -0.134 4.134 8 C -0.149 4.149 9 C -0.158 4.158 10 C -0.160 4.160 11 C -0.152 4.152 12 C 0.297 3.703 13 O -0.453 6.453 14 N -0.356 5.356 15 C 0.004 3.996 16 C 0.020 3.980 17 N -0.390 5.390 18 C -0.379 4.379 19 H 0.101 0.899 20 C -0.270 4.270 21 N -0.620 5.620 22 Si 0.807 3.193 23 H -0.214 1.214 24 H -0.223 1.223 25 H -0.190 1.190 26 H 0.085 0.915 27 H 0.090 0.910 28 H 0.111 0.889 29 H 0.252 0.748 30 H 0.133 0.867 31 H 0.105 0.895 32 H 0.084 0.916 33 H 0.097 0.903 34 H 0.095 0.905 35 H 0.083 0.917 36 H 0.093 0.907 37 H 0.081 0.919 38 H 0.087 0.913 39 H 0.256 0.744 40 H 0.073 0.927 41 H 0.077 0.923 42 H 0.058 0.942 43 H 0.054 0.946 44 H 0.206 0.794 45 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -4.876 3.293 29.226 29.812 hybrid contribution 0.203 -0.163 -1.374 1.398 sum -4.673 3.130 27.852 28.414 Atomic orbital electron populations 1.22109 0.90934 1.03616 1.04462 1.20757 0.96977 0.97581 0.82524 0.86717 1.45828 1.67063 1.15051 1.08244 1.21059 0.76195 0.86730 0.84867 1.90666 1.51810 1.17510 1.85440 1.22312 1.01855 0.97666 0.91550 1.22568 0.97784 0.97283 0.97283 1.22362 1.02363 0.96727 0.94359 1.22144 1.01651 0.95349 0.96891 1.22071 1.02258 0.97825 0.93014 1.20931 0.79671 0.84314 0.85340 1.90699 1.39484 1.28006 1.87063 1.45648 1.53144 1.32291 1.04490 1.21188 0.98653 0.96195 0.83590 1.20868 0.97356 0.95092 0.84661 1.42412 1.61702 1.33574 1.01334 1.19646 1.25241 1.08736 0.84305 0.89903 1.25665 1.00945 0.98406 1.01954 1.69832 1.40739 1.22270 1.29178 0.85068 0.78198 0.76759 0.79257 1.21397 1.22312 1.19048 0.91490 0.91022 0.88950 0.74823 0.86683 0.89488 0.91605 0.90329 0.90485 0.91731 0.90650 0.91949 0.91283 0.74414 0.92725 0.92260 0.94215 0.94551 0.79414 0.93917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.34 9.38 71.98 0.68 -1.66 16 2 C 0.13 2.55 2.98 44.25 0.13 2.68 16 3 H 0.12 2.30 7.58 -2.39 -0.02 2.28 16 4 N -0.71 -13.65 4.94 -446.09 -2.20 -15.85 16 5 C 0.52 10.67 7.10 87.66 0.62 11.29 16 6 O -0.57 -15.50 15.09 -3.02 -0.05 -15.54 16 7 C -0.11 -1.63 3.25 -10.34 -0.03 -1.66 16 8 C -0.11 -1.22 6.34 32.01 0.20 -1.02 16 9 C -0.12 -1.07 6.82 31.67 0.22 -0.85 16 10 C -0.12 -1.30 6.80 31.32 0.21 -1.09 16 11 C -0.11 -1.69 6.18 31.32 0.19 -1.50 16 12 C 0.51 12.82 7.22 87.66 0.63 13.46 16 13 O -0.57 -18.62 15.84 -3.04 -0.05 -18.67 16 14 N -0.70 -16.74 5.45 -463.05 -2.52 -19.27 16 15 C 0.13 4.12 5.79 86.38 0.50 4.62 16 16 C 0.15 5.37 6.37 86.38 0.55 5.92 16 17 N -0.75 -37.15 5.60 -343.45 -1.92 -39.07 16 18 C -0.25 -13.51 9.99 84.03 0.84 -12.67 16 19 H 0.08 4.24 7.83 -2.91 -0.02 4.22 16 20 C -0.08 -4.40 5.50 84.86 0.47 -3.93 16 21 N -0.97 -59.23 13.06 21.65 0.28 -58.95 16 22 Si 0.98 45.36 29.55 68.60 2.03 47.39 16 23 H -0.29 -13.09 7.11 99.48 0.71 -12.38 16 24 H -0.30 -13.90 7.11 99.48 0.71 -13.19 16 25 H -0.27 -11.50 7.11 99.48 0.71 -10.80 16 26 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 27 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 28 H 0.09 1.08 7.56 -2.39 -0.02 1.06 16 29 H 0.41 7.51 7.79 -92.71 -0.72 6.79 16 30 H 0.12 1.38 8.14 -2.38 -0.02 1.36 16 31 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.07 0.82 8.06 -2.39 -0.02 0.80 16 33 H 0.08 0.57 8.14 -2.39 -0.02 0.55 16 34 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 35 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 36 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 37 H 0.06 1.22 6.85 -2.39 -0.02 1.20 16 38 H 0.07 0.97 8.14 -2.38 -0.02 0.95 16 39 H 0.42 7.28 7.89 -92.71 -0.73 6.55 16 40 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 41 H 0.06 2.06 8.14 -2.38 -0.02 2.04 16 42 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 43 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 44 H 0.37 20.13 7.67 -92.71 -0.71 19.42 16 45 H 0.25 14.91 8.31 -92.71 -0.77 14.14 16 Total: -1.00 -71.70 369.98 -0.38 -72.08 By element: Atomic # 1 Polarization: 35.44 SS G_CDS: -1.16 Total: 34.28 kcal Atomic # 6 Polarization: 8.38 SS G_CDS: 5.21 Total: 13.60 kcal Atomic # 7 Polarization: -126.76 SS G_CDS: -6.37 Total: -133.13 kcal Atomic # 8 Polarization: -34.12 SS G_CDS: -0.09 Total: -34.21 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 2.03 Total: 47.39 kcal Total: -71.70 -0.38 -72.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001127972740.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.972 kcal (2) G-P(sol) polarization free energy of solvation -71.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.085 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds