Wall clock time and date at job start Tue Mar 31 2020 03:53:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.21288 * 119.99834 * 2 1 4 4 N 1.34774 * 119.99905 * 180.02562 * 2 1 3 5 5 C 1.46503 * 119.99623 * 185.00554 * 4 2 1 6 6 C 1.50702 * 109.47152 * 54.85135 * 5 4 2 7 7 O 1.21279 * 119.99832 * 216.05348 * 6 5 4 8 8 N 1.34770 * 120.00078 * 36.05932 * 6 5 4 9 9 C 1.46500 * 120.00023 * 175.00829 * 8 6 5 10 10 C 1.52995 * 109.47319 * 179.97438 * 9 8 6 11 11 N 1.46500 * 109.47319 * 179.97438 * 10 9 8 12 12 C 1.36934 * 119.99910 * 179.97438 * 11 10 9 13 13 H 1.08005 * 120.00583 * 0.02562 * 12 11 10 14 14 C 1.38816 * 119.99959 * 179.97438 * 12 11 10 15 15 N 1.31618 * 119.99715 * 0.02562 * 14 12 11 16 16 Si 1.86799 * 120.00270 * 179.97438 * 14 12 11 17 17 H 1.48502 * 109.46920 * 89.99944 * 16 14 12 18 18 H 1.48489 * 109.47315 * 210.00348 * 16 14 12 19 19 H 1.48503 * 109.47039 * 330.00734 * 16 14 12 20 20 C 1.53001 * 109.47114 * 294.84746 * 5 4 2 21 21 C 1.52995 * 109.47317 * 299.99946 * 20 5 4 22 22 C 1.52997 * 109.47663 * 300.00336 * 21 20 5 23 23 C 1.53001 * 109.47029 * 59.99488 * 22 21 20 24 24 C 1.52998 * 109.47129 * 174.84998 * 5 4 2 25 25 H 1.08998 * 109.47446 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47364 * 299.99777 * 1 2 3 27 27 H 1.09004 * 109.47505 * 59.99757 * 1 2 3 28 28 H 0.96991 * 120.00399 * 5.00553 * 4 2 1 29 29 H 0.96998 * 120.00308 * 354.99993 * 8 6 5 30 30 H 1.09001 * 109.46953 * 299.99549 * 9 8 6 31 31 H 1.08997 * 109.47136 * 59.99544 * 9 8 6 32 32 H 1.09007 * 109.47328 * 299.99925 * 10 9 8 33 33 H 1.08997 * 109.47203 * 59.99813 * 10 9 8 34 34 H 0.97000 * 119.99762 * 0.02562 * 11 10 9 35 35 H 0.97008 * 119.99533 * 180.02562 * 15 14 12 36 36 H 1.09007 * 109.47170 * 180.02562 * 20 5 4 37 37 H 1.09004 * 109.47059 * 60.00659 * 20 5 4 38 38 H 1.09000 * 109.47270 * 179.97438 * 21 20 5 39 39 H 1.09009 * 109.46594 * 60.00478 * 21 20 5 40 40 H 1.08997 * 109.47112 * 179.97438 * 22 21 20 41 41 H 1.08998 * 109.46841 * 299.99984 * 22 21 20 42 42 H 1.08998 * 109.46904 * 60.00535 * 23 22 21 43 43 H 1.09004 * 109.47059 * 180.02562 * 23 22 21 44 44 H 1.09002 * 109.46972 * 300.00607 * 24 5 4 45 45 H 1.08996 * 109.47933 * 179.97438 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1808 -1.1672 -0.0005 5 6 3.6417 -1.1696 0.1102 6 6 4.0534 -0.4044 1.3415 7 8 5.0612 0.2702 1.3274 8 7 3.3018 -0.4699 2.4582 9 6 3.7577 0.1840 3.6874 10 6 2.7281 -0.0404 4.7966 11 7 3.1843 0.6130 6.0259 12 6 2.4202 0.5473 7.1603 13 1 1.4814 0.0134 7.1490 14 6 2.8527 1.1659 8.3253 15 7 3.9970 1.8161 8.3392 16 14 1.8100 1.0769 9.8726 17 1 2.1953 -0.1212 10.6608 18 1 2.0299 2.2979 10.6886 19 1 0.3760 0.9831 9.4985 20 6 4.2481 -0.5072 -1.1285 21 6 3.8301 -1.2840 -2.3785 22 6 4.3312 -2.7259 -2.2744 23 6 3.7248 -3.3883 -1.0357 24 6 4.1428 -2.6114 0.2144 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 1.6987 -2.0056 -0.0742 29 1 2.4590 -0.9499 2.4482 30 1 4.7159 -0.2385 3.9898 31 1 3.8720 1.2532 3.5092 32 1 1.7700 0.3823 4.4940 33 1 2.6134 -1.1096 4.9749 34 1 4.0272 1.0928 6.0360 35 1 4.2993 2.2482 9.1535 36 1 5.3350 -0.5094 -1.0464 37 1 3.8911 0.5201 -1.2027 38 1 4.2618 -0.8119 -3.2610 39 1 2.7431 -1.2821 -2.4609 40 1 4.0330 -3.2794 -3.1648 41 1 5.4180 -2.7277 -2.1920 42 1 2.6379 -3.3865 -1.1181 43 1 4.0821 -4.4154 -0.9612 44 1 3.7107 -3.0834 1.0968 45 1 5.2297 -2.6133 0.2963 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001130376031.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:53:39 Heat of formation + Delta-G solvation = -76.984891 kcal Electronic energy + Delta-G solvation = -25150.566095 eV Core-core repulsion = 21588.597040 eV Total energy + Delta-G solvation = -3561.969055 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.26383 -38.79453 -37.85574 -35.62595 -34.26922 -33.60718 -31.42166 -31.14444 -30.91604 -28.86613 -27.69059 -24.26829 -23.09979 -22.97671 -21.48038 -21.34333 -20.46578 -19.25904 -17.61124 -17.32459 -17.09967 -16.23566 -15.54243 -15.37598 -14.99945 -14.75516 -14.53010 -14.31927 -14.18090 -13.88923 -13.51236 -13.16909 -13.13022 -13.00763 -12.75203 -12.64839 -12.56708 -12.33213 -12.21620 -11.47203 -11.36706 -11.09560 -10.94576 -10.91481 -10.81489 -10.79012 -10.63563 -10.11838 -10.03217 -9.84104 -9.75253 -9.10310 -8.95023 -8.74584 -6.97934 -5.78076 -3.08816 2.42683 2.61705 3.03270 3.30578 3.42792 3.47644 3.49848 4.32311 4.38194 4.43651 4.58760 4.60847 4.79752 4.89264 4.92400 4.97658 5.10641 5.14653 5.19681 5.27348 5.41748 5.51755 5.55095 5.57029 5.64527 5.69084 5.76748 5.80260 5.82200 5.90952 5.99386 6.00009 6.18418 6.21356 6.23866 6.54630 6.73282 6.79678 7.21765 7.66261 7.68566 8.01667 8.38341 8.40792 9.50524 10.05724 10.40760 11.44534 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.024524 B = 0.003168 C = 0.003045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1141.474947 B = 8836.425029 C = 9193.239112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.506 3.494 3 O -0.523 6.523 4 N -0.726 5.726 5 C 0.167 3.833 6 C 0.520 3.480 7 O -0.532 6.532 8 N -0.718 5.718 9 C 0.111 3.889 10 C 0.147 3.853 11 N -0.729 5.729 12 C -0.244 4.244 13 H 0.071 0.929 14 C -0.012 4.012 15 N -0.930 5.930 16 Si 0.910 3.090 17 H -0.289 1.289 18 H -0.291 1.291 19 H -0.281 1.281 20 C -0.116 4.116 21 C -0.114 4.114 22 C -0.122 4.122 23 C -0.115 4.115 24 C -0.120 4.120 25 H 0.075 0.925 26 H 0.099 0.901 27 H 0.094 0.906 28 H 0.402 0.598 29 H 0.395 0.605 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.022 0.978 33 H 0.022 0.978 34 H 0.386 0.614 35 H 0.257 0.743 36 H 0.080 0.920 37 H 0.085 0.915 38 H 0.064 0.936 39 H 0.061 0.939 40 H 0.062 0.938 41 H 0.065 0.935 42 H 0.063 0.937 43 H 0.070 0.930 44 H 0.076 0.924 45 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.431 -13.125 -24.214 28.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.293 3.707 3 O -0.398 6.398 4 N -0.383 5.383 5 C 0.077 3.923 6 C 0.304 3.696 7 O -0.407 6.407 8 N -0.368 5.368 9 C -0.012 4.012 10 C 0.019 3.981 11 N -0.374 5.374 12 C -0.375 4.375 13 H 0.089 0.911 14 C -0.209 4.209 15 N -0.578 5.578 16 Si 0.741 3.259 17 H -0.216 1.216 18 H -0.217 1.217 19 H -0.207 1.207 20 C -0.155 4.155 21 C -0.152 4.152 22 C -0.160 4.160 23 C -0.153 4.153 24 C -0.158 4.158 25 H 0.094 0.906 26 H 0.117 0.883 27 H 0.112 0.888 28 H 0.238 0.762 29 H 0.228 0.772 30 H 0.086 0.914 31 H 0.087 0.913 32 H 0.040 0.960 33 H 0.040 0.960 34 H 0.220 0.780 35 H 0.066 0.934 36 H 0.099 0.901 37 H 0.104 0.896 38 H 0.083 0.917 39 H 0.079 0.921 40 H 0.081 0.919 41 H 0.084 0.916 42 H 0.081 0.919 43 H 0.089 0.911 44 H 0.095 0.905 45 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -4.373 -11.874 -24.048 27.174 hybrid contribution -0.966 -0.497 0.966 1.453 sum -5.338 -12.371 -23.082 26.727 Atomic orbital electron populations 1.21870 0.91348 1.04220 1.05655 1.20938 0.90731 0.83533 0.75520 1.90801 1.70260 1.31153 1.47546 1.46334 1.06312 1.09287 1.76373 1.20548 0.80819 0.96586 0.94308 1.20433 0.83902 0.81285 0.84026 1.90703 1.26525 1.39910 1.83561 1.45810 1.24287 1.55691 1.11060 1.21564 0.98562 0.98112 0.82970 1.20725 0.94577 0.96183 0.86632 1.42190 1.25338 1.63834 1.06035 1.19186 1.01654 1.28386 0.88268 0.91080 1.24785 0.97470 1.00445 0.98154 1.69675 1.21166 1.39240 1.27741 0.86145 0.79436 0.77057 0.83251 1.21643 1.21677 1.20716 1.21757 1.01477 1.00659 0.91612 1.21493 1.00984 0.95126 0.97589 1.21584 1.00907 0.95927 0.97547 1.21519 1.00662 0.99083 0.94042 1.21799 1.02970 0.91770 0.99276 0.90562 0.88290 0.88783 0.76156 0.77178 0.91414 0.91288 0.96002 0.95985 0.77988 0.93357 0.90147 0.89622 0.91729 0.92058 0.91882 0.91642 0.91856 0.91104 0.90502 0.89440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.13 10.39 36.00 0.37 -0.76 16 2 C 0.51 5.36 6.91 -10.99 -0.08 5.28 16 3 O -0.52 -8.40 14.39 5.55 0.08 -8.32 16 4 N -0.73 -5.93 3.41 -48.68 -0.17 -6.10 16 5 C 0.17 1.80 0.59 -132.97 -0.08 1.72 16 6 C 0.52 8.19 5.16 -10.99 -0.06 8.14 16 7 O -0.53 -10.71 16.09 5.56 0.09 -10.62 16 8 N -0.72 -10.90 5.23 -60.30 -0.32 -11.22 16 9 C 0.11 2.09 5.79 -4.04 -0.02 2.06 16 10 C 0.15 3.01 6.37 -4.04 -0.03 2.99 16 11 N -0.73 -19.08 5.60 -59.91 -0.34 -19.42 16 12 C -0.24 -6.93 9.99 -15.06 -0.15 -7.08 16 13 H 0.07 1.93 7.83 -52.48 -0.41 1.52 16 14 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 15 N -0.93 -28.69 13.06 55.49 0.72 -27.97 16 16 Si 0.91 22.51 29.55 -169.99 -5.02 17.49 16 17 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 18 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 19 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 20 C -0.12 -1.34 4.11 -26.73 -0.11 -1.45 16 21 C -0.11 -0.92 5.76 -26.74 -0.15 -1.08 16 22 C -0.12 -0.77 5.92 -26.73 -0.16 -0.93 16 23 C -0.12 -0.64 5.75 -26.73 -0.15 -0.80 16 24 C -0.12 -0.96 4.78 -26.73 -0.13 -1.09 16 25 H 0.08 0.27 7.92 -51.93 -0.41 -0.14 16 26 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.09 0.56 8.14 -51.93 -0.42 0.13 16 28 H 0.40 1.88 7.01 -40.82 -0.29 1.59 16 29 H 0.39 4.91 7.62 -40.82 -0.31 4.60 16 30 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 31 H 0.07 1.45 8.14 -51.93 -0.42 1.03 16 32 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 34 H 0.39 10.74 7.67 -40.82 -0.31 10.43 16 35 H 0.26 7.61 8.31 -40.82 -0.34 7.28 16 36 H 0.08 1.00 7.88 -51.93 -0.41 0.60 16 37 H 0.09 1.26 6.38 -51.93 -0.33 0.92 16 38 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 39 H 0.06 0.47 7.60 -51.92 -0.39 0.07 16 40 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 41 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.06 0.27 6.76 -51.93 -0.35 -0.08 16 43 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 44 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 45 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 358.38 15.07 5.40 5.40 Total: -1.00 -36.62 358.38 -7.81 -44.43 By element: Atomic # 1 Polarization: 17.19 SS G_CDS: -7.43 Total: 9.76 kcal Atomic # 6 Polarization: 7.39 SS G_CDS: -0.84 Total: 6.56 kcal Atomic # 7 Polarization: -64.60 SS G_CDS: -0.09 Total: -64.70 kcal Atomic # 8 Polarization: -19.11 SS G_CDS: 0.17 Total: -18.94 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -5.02 Total: 17.49 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -36.62 -7.81 -44.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001130376031.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.555 kcal (2) G-P(sol) polarization free energy of solvation -36.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds