Wall clock time and date at job start Tue Mar 31 2020 03:53:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.21288 * 119.99834 * 2 1 4 4 N 1.34774 * 119.99905 * 180.02562 * 2 1 3 5 5 C 1.46503 * 119.99623 * 185.00554 * 4 2 1 6 6 C 1.50702 * 109.47152 * 54.85135 * 5 4 2 7 7 O 1.21279 * 119.99832 * 216.05348 * 6 5 4 8 8 N 1.34770 * 120.00078 * 36.05932 * 6 5 4 9 9 C 1.46500 * 120.00023 * 175.00829 * 8 6 5 10 10 C 1.52995 * 109.47319 * 179.97438 * 9 8 6 11 11 N 1.46500 * 109.47319 * 179.97438 * 10 9 8 12 12 C 1.36934 * 119.99910 * 179.97438 * 11 10 9 13 13 H 1.08005 * 120.00583 * 0.02562 * 12 11 10 14 14 C 1.38816 * 119.99959 * 179.97438 * 12 11 10 15 15 N 1.31618 * 119.99715 * 0.02562 * 14 12 11 16 16 Si 1.86799 * 120.00270 * 179.97438 * 14 12 11 17 17 H 1.48502 * 109.46920 * 89.99944 * 16 14 12 18 18 H 1.48489 * 109.47315 * 210.00348 * 16 14 12 19 19 H 1.48503 * 109.47039 * 330.00734 * 16 14 12 20 20 C 1.53001 * 109.47114 * 294.84746 * 5 4 2 21 21 C 1.52995 * 109.47317 * 299.99946 * 20 5 4 22 22 C 1.52997 * 109.47663 * 300.00336 * 21 20 5 23 23 C 1.53001 * 109.47029 * 59.99488 * 22 21 20 24 24 C 1.52998 * 109.47129 * 174.84998 * 5 4 2 25 25 H 1.08998 * 109.47446 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47364 * 299.99777 * 1 2 3 27 27 H 1.09004 * 109.47505 * 59.99757 * 1 2 3 28 28 H 0.96991 * 120.00399 * 5.00553 * 4 2 1 29 29 H 0.96998 * 120.00308 * 354.99993 * 8 6 5 30 30 H 1.09001 * 109.46953 * 299.99549 * 9 8 6 31 31 H 1.08997 * 109.47136 * 59.99544 * 9 8 6 32 32 H 1.09007 * 109.47328 * 299.99925 * 10 9 8 33 33 H 1.08997 * 109.47203 * 59.99813 * 10 9 8 34 34 H 0.97000 * 119.99762 * 0.02562 * 11 10 9 35 35 H 0.97008 * 119.99533 * 180.02562 * 15 14 12 36 36 H 1.09007 * 109.47170 * 180.02562 * 20 5 4 37 37 H 1.09004 * 109.47059 * 60.00659 * 20 5 4 38 38 H 1.09000 * 109.47270 * 179.97438 * 21 20 5 39 39 H 1.09009 * 109.46594 * 60.00478 * 21 20 5 40 40 H 1.08997 * 109.47112 * 179.97438 * 22 21 20 41 41 H 1.08998 * 109.46841 * 299.99984 * 22 21 20 42 42 H 1.08998 * 109.46904 * 60.00535 * 23 22 21 43 43 H 1.09004 * 109.47059 * 180.02562 * 23 22 21 44 44 H 1.09002 * 109.46972 * 300.00607 * 24 5 4 45 45 H 1.08996 * 109.47933 * 179.97438 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1808 -1.1672 -0.0005 5 6 3.6417 -1.1696 0.1102 6 6 4.0534 -0.4044 1.3415 7 8 5.0612 0.2702 1.3274 8 7 3.3018 -0.4699 2.4582 9 6 3.7577 0.1840 3.6874 10 6 2.7281 -0.0404 4.7966 11 7 3.1843 0.6130 6.0259 12 6 2.4202 0.5473 7.1603 13 1 1.4814 0.0134 7.1490 14 6 2.8527 1.1659 8.3253 15 7 3.9970 1.8161 8.3392 16 14 1.8100 1.0769 9.8726 17 1 2.1953 -0.1212 10.6608 18 1 2.0299 2.2979 10.6886 19 1 0.3760 0.9831 9.4985 20 6 4.2481 -0.5072 -1.1285 21 6 3.8301 -1.2840 -2.3785 22 6 4.3312 -2.7259 -2.2744 23 6 3.7248 -3.3883 -1.0357 24 6 4.1428 -2.6114 0.2144 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 1.6987 -2.0056 -0.0742 29 1 2.4590 -0.9499 2.4482 30 1 4.7159 -0.2385 3.9898 31 1 3.8720 1.2532 3.5092 32 1 1.7700 0.3823 4.4940 33 1 2.6134 -1.1096 4.9749 34 1 4.0272 1.0928 6.0360 35 1 4.2993 2.2482 9.1535 36 1 5.3350 -0.5094 -1.0464 37 1 3.8911 0.5201 -1.2027 38 1 4.2618 -0.8119 -3.2610 39 1 2.7431 -1.2821 -2.4609 40 1 4.0330 -3.2794 -3.1648 41 1 5.4180 -2.7277 -2.1920 42 1 2.6379 -3.3865 -1.1181 43 1 4.0821 -4.4154 -0.9612 44 1 3.7107 -3.0834 1.0968 45 1 5.2297 -2.6133 0.2963 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001130376031.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:53:38 Heat of formation + Delta-G solvation = -105.492782 kcal Electronic energy + Delta-G solvation = -25151.802290 eV Core-core repulsion = 21588.597040 eV Total energy + Delta-G solvation = -3563.205250 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.24367 -39.96226 -38.75158 -37.34427 -35.65642 -34.84119 -33.16056 -31.94304 -31.82880 -29.63398 -29.32586 -25.93115 -24.38834 -23.71724 -23.11802 -22.20748 -21.48177 -20.16715 -19.37021 -18.55396 -18.10279 -17.31356 -16.79359 -16.60375 -16.38856 -16.10760 -15.76309 -15.23972 -15.20634 -15.10658 -14.88702 -14.77493 -14.60715 -13.81147 -13.60317 -13.45765 -13.22588 -13.13931 -13.07252 -12.97251 -12.91497 -12.68562 -12.57589 -12.13000 -12.10951 -11.90953 -11.79503 -11.50138 -11.28108 -11.04453 -11.01683 -10.74216 -10.24653 -10.09972 -9.10656 -7.98536 -5.31088 1.42864 1.47195 1.50401 1.58764 1.61300 1.98459 2.22012 2.56300 3.35481 3.46847 3.58536 3.71403 3.93155 3.93718 4.07916 4.11634 4.15355 4.21656 4.23408 4.44598 4.48622 4.49024 4.55709 4.64041 4.68877 4.76196 4.93683 4.99556 5.05291 5.09519 5.12444 5.16089 5.19948 5.27264 5.31471 5.37246 5.39551 5.46090 5.52124 6.21179 6.40748 6.57085 7.13205 7.26683 7.27253 7.97518 8.21830 9.25322 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.024524 B = 0.003168 C = 0.003045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1141.474947 B = 8836.425029 C = 9193.239112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.499 3.501 3 O -0.586 6.586 4 N -0.705 5.705 5 C 0.176 3.824 6 C 0.511 3.489 7 O -0.585 6.585 8 N -0.706 5.706 9 C 0.128 3.872 10 C 0.155 3.845 11 N -0.747 5.747 12 C -0.250 4.250 13 H 0.085 0.915 14 C -0.078 4.078 15 N -0.972 5.972 16 Si 0.983 3.017 17 H -0.283 1.283 18 H -0.297 1.297 19 H -0.264 1.264 20 C -0.115 4.115 21 C -0.106 4.106 22 C -0.121 4.121 23 C -0.109 4.109 24 C -0.117 4.117 25 H 0.117 0.883 26 H 0.092 0.908 27 H 0.102 0.898 28 H 0.425 0.575 29 H 0.411 0.589 30 H 0.057 0.943 31 H 0.038 0.962 32 H 0.031 0.969 33 H 0.044 0.956 34 H 0.372 0.628 35 H 0.253 0.747 36 H 0.059 0.941 37 H 0.047 0.953 38 H 0.063 0.937 39 H 0.072 0.928 40 H 0.085 0.915 41 H 0.057 0.943 42 H 0.087 0.913 43 H 0.090 0.910 44 H 0.092 0.908 45 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.309 -16.415 -25.218 31.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.289 3.711 3 O -0.465 6.465 4 N -0.363 5.363 5 C 0.086 3.914 6 C 0.298 3.702 7 O -0.463 6.463 8 N -0.358 5.358 9 C 0.003 3.997 10 C 0.028 3.972 11 N -0.391 5.391 12 C -0.381 4.381 13 H 0.103 0.897 14 C -0.270 4.270 15 N -0.622 5.622 16 Si 0.811 3.189 17 H -0.210 1.210 18 H -0.224 1.224 19 H -0.189 1.189 20 C -0.154 4.154 21 C -0.144 4.144 22 C -0.158 4.158 23 C -0.146 4.146 24 C -0.155 4.155 25 H 0.136 0.864 26 H 0.111 0.889 27 H 0.121 0.879 28 H 0.266 0.734 29 H 0.248 0.752 30 H 0.075 0.925 31 H 0.056 0.944 32 H 0.049 0.951 33 H 0.062 0.938 34 H 0.204 0.796 35 H 0.061 0.939 36 H 0.078 0.922 37 H 0.066 0.934 38 H 0.082 0.918 39 H 0.091 0.909 40 H 0.103 0.897 41 H 0.075 0.925 42 H 0.105 0.895 43 H 0.108 0.892 44 H 0.110 0.890 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -7.338 -15.267 -25.099 30.280 hybrid contribution -0.048 0.549 1.194 1.315 sum -7.386 -14.718 -23.905 29.028 Atomic orbital electron populations 1.21902 0.87693 1.07000 1.05718 1.21791 0.92449 0.82932 0.73972 1.90798 1.71772 1.33521 1.50377 1.46157 1.05044 1.09996 1.75119 1.20379 0.82444 0.97555 0.91011 1.21477 0.82953 0.80618 0.85185 1.90672 1.28923 1.42221 1.84506 1.45629 1.24949 1.55286 1.09890 1.21134 0.97903 0.96552 0.84102 1.20789 0.94828 0.96656 0.84963 1.42439 1.24828 1.64276 1.07513 1.19668 1.02016 1.27509 0.88921 0.89692 1.25731 0.98888 1.00690 1.01701 1.69857 1.23251 1.40776 1.28354 0.85012 0.78479 0.76616 0.78840 1.21023 1.22390 1.18870 1.21693 1.00208 0.99446 0.94033 1.21458 1.01614 0.95984 0.95339 1.21595 1.00547 0.94592 0.99073 1.21546 1.02105 0.99241 0.91712 1.21856 1.02234 0.89737 1.01703 0.86428 0.88902 0.87938 0.73389 0.75202 0.92507 0.94358 0.95081 0.93822 0.79608 0.93875 0.92202 0.93424 0.91800 0.90945 0.89686 0.92457 0.89463 0.89165 0.88958 0.90865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.69 10.39 71.23 0.74 -0.95 16 2 C 0.50 9.95 6.91 87.66 0.61 10.56 16 3 O -0.59 -19.45 14.39 -3.05 -0.04 -19.50 16 4 N -0.70 -9.88 3.41 -426.32 -1.45 -11.33 16 5 C 0.18 3.70 0.59 2.86 0.00 3.70 16 6 C 0.51 16.63 5.16 87.66 0.45 17.08 16 7 O -0.58 -25.21 16.09 -3.03 -0.05 -25.26 16 8 N -0.71 -21.43 5.23 -463.08 -2.42 -23.85 16 9 C 0.13 4.93 5.79 86.38 0.50 5.43 16 10 C 0.15 6.24 6.37 86.38 0.55 6.79 16 11 N -0.75 -39.50 5.60 -343.45 -1.92 -41.42 16 12 C -0.25 -14.07 9.99 84.03 0.84 -13.23 16 13 H 0.09 4.45 7.83 -2.91 -0.02 4.43 16 14 C -0.08 -4.54 5.50 84.86 0.47 -4.07 16 15 N -0.97 -61.22 13.06 21.65 0.28 -60.94 16 16 Si 0.98 46.13 29.55 68.60 2.03 48.15 16 17 H -0.28 -12.94 7.11 99.48 0.71 -12.24 16 18 H -0.30 -14.16 7.11 99.48 0.71 -13.45 16 19 H -0.26 -11.52 7.11 99.48 0.71 -10.81 16 20 C -0.11 -2.75 4.11 30.59 0.13 -2.63 16 21 C -0.11 -1.57 5.76 30.59 0.18 -1.39 16 22 C -0.12 -1.18 5.92 30.59 0.18 -1.00 16 23 C -0.11 -0.77 5.75 30.60 0.18 -0.60 16 24 C -0.12 -1.62 4.78 30.60 0.15 -1.48 16 25 H 0.12 0.22 7.92 -2.39 -0.02 0.20 16 26 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 27 H 0.10 0.94 8.14 -2.38 -0.02 0.92 16 28 H 0.43 2.04 7.01 -92.71 -0.65 1.39 16 29 H 0.41 9.52 7.62 -92.71 -0.71 8.82 16 30 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 31 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 32 H 0.03 1.23 8.14 -2.38 -0.02 1.21 16 33 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 34 H 0.37 21.44 7.67 -92.71 -0.71 20.73 16 35 H 0.25 15.34 8.31 -92.70 -0.77 14.57 16 36 H 0.06 1.63 7.88 -2.38 -0.02 1.61 16 37 H 0.05 1.51 6.38 -2.38 -0.02 1.49 16 38 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 39 H 0.07 0.91 7.60 -2.38 -0.02 0.90 16 40 H 0.08 0.54 8.14 -2.39 -0.02 0.52 16 41 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 42 H 0.09 0.24 6.76 -2.39 -0.02 0.23 16 43 H 0.09 0.42 8.14 -2.38 -0.02 0.40 16 44 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 45 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 Total: -1.00 -84.78 358.38 0.32 -84.46 By element: Atomic # 1 Polarization: 32.51 SS G_CDS: -1.06 Total: 31.45 kcal Atomic # 6 Polarization: 13.27 SS G_CDS: 4.96 Total: 18.23 kcal Atomic # 7 Polarization: -132.02 SS G_CDS: -5.52 Total: -137.54 kcal Atomic # 8 Polarization: -44.67 SS G_CDS: -0.09 Total: -44.76 kcal Atomic # 14 Polarization: 46.13 SS G_CDS: 2.03 Total: 48.15 kcal Total: -84.78 0.32 -84.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001130376031.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.033 kcal (2) G-P(sol) polarization free energy of solvation -84.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.459 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds