Wall clock time and date at job start Tue Mar 31 2020 03:47:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46497 * 109.47284 * 2 1 4 4 C 1.34776 * 120.00218 * 179.97438 * 3 2 1 5 5 O 1.21288 * 119.99691 * 0.02562 * 4 3 2 6 6 C 1.50695 * 120.00338 * 180.02562 * 4 3 2 7 7 C 1.50705 * 109.47349 * 180.02562 * 6 4 3 8 8 O 1.21276 * 119.99692 * 0.02562 * 7 6 4 9 9 N 1.34775 * 120.00068 * 180.02562 * 7 6 4 10 10 C 1.46496 * 119.99953 * 180.02562 * 9 7 6 11 11 H 1.08999 * 109.50022 * 35.06104 * 10 9 7 12 12 C 1.53044 * 109.49741 * 155.16235 * 10 9 7 13 13 C 1.53040 * 109.53754 * 58.58580 * 12 10 9 14 14 C 1.53188 * 109.31213 * 61.36569 * 13 12 10 15 15 H 1.09001 * 109.58866 * 65.15382 * 14 13 12 16 16 C 1.53008 * 109.58312 * 185.57445 * 14 13 12 17 17 N 1.46918 * 108.77780 * 305.36008 * 14 13 12 18 18 C 1.36937 * 120.63781 * 233.58783 * 17 14 13 19 19 H 1.07998 * 119.99566 * 29.03942 * 18 17 14 20 20 C 1.38811 * 120.00372 * 209.04320 * 18 17 14 21 21 N 1.31617 * 119.99823 * 15.00658 * 20 18 17 22 22 Si 1.86802 * 119.99628 * 195.01226 * 20 18 17 23 23 H 1.48498 * 109.47411 * 60.00105 * 22 20 18 24 24 H 1.48504 * 109.46790 * 179.97438 * 22 20 18 25 25 H 1.48494 * 109.47138 * 299.99550 * 22 20 18 26 26 C 1.46930 * 118.73499 * 53.61464 * 17 14 13 27 27 H 1.09001 * 109.46675 * 300.00259 * 1 2 3 28 28 H 1.08999 * 109.46708 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.46766 * 59.99835 * 1 2 3 30 30 H 1.08998 * 109.46766 * 120.00165 * 2 1 3 31 31 H 1.08999 * 109.47363 * 240.00001 * 2 1 3 32 32 H 0.97000 * 120.00329 * 0.02562 * 3 2 1 33 33 H 1.08998 * 109.47245 * 300.00215 * 6 4 3 34 34 H 1.08999 * 109.46908 * 60.00066 * 6 4 3 35 35 H 0.96999 * 119.99868 * 0.02562 * 9 7 6 36 36 H 1.08999 * 109.46093 * 178.60524 * 12 10 9 37 37 H 1.08998 * 109.45829 * 298.56641 * 12 10 9 38 38 H 1.08997 * 109.50031 * 301.41139 * 13 12 10 39 39 H 1.09005 * 109.51927 * 181.33542 * 13 12 10 40 40 H 1.08999 * 109.46502 * 179.28693 * 16 14 13 41 41 H 1.08995 * 109.47008 * 299.29062 * 16 14 13 42 42 H 1.09000 * 109.46639 * 59.29393 * 16 14 13 43 43 H 0.97001 * 119.99344 * 179.97438 * 21 20 18 44 44 H 1.09006 * 109.58652 * 186.60226 * 26 17 14 45 45 H 1.08991 * 109.70900 * 66.24727 * 26 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 3.3435 1.6275 0.0005 5 8 4.1316 0.7055 0.0005 6 6 3.8459 3.0482 0.0011 7 6 5.3529 3.0482 0.0010 8 8 5.9592 1.9979 0.0000 9 7 6.0268 4.2154 0.0020 10 6 7.4918 4.2153 0.0013 11 1 7.8553 3.3749 -0.5901 12 6 8.0023 5.5252 -0.6035 13 6 7.4649 6.7069 0.2070 14 6 7.9766 6.6076 1.6475 15 1 9.0606 6.7218 1.6590 16 6 7.3333 7.7056 2.4971 17 7 7.6143 5.2905 2.1884 18 6 6.9273 5.1856 3.3683 19 1 6.2550 5.9738 3.6735 20 6 7.0949 4.0663 4.1720 21 7 8.1107 3.2549 3.9667 22 14 5.8786 3.7117 5.5447 23 1 4.5199 3.5407 4.9704 24 1 6.2775 2.4672 6.2501 25 1 5.8714 4.8447 6.5046 26 6 8.0038 4.0879 1.4395 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.3882 2.1185 0.0004 33 1 3.4829 3.5623 -0.8888 34 1 3.4823 3.5617 0.8911 35 1 5.5418 5.0554 0.0031 36 1 9.0921 5.5351 -0.5811 37 1 7.6598 5.6067 -1.6350 38 1 6.3752 6.6835 0.2056 39 1 7.8094 7.6404 -0.2380 40 1 7.6889 7.6254 3.5243 41 1 7.6032 8.6817 2.0942 42 1 6.2494 7.5916 2.4779 43 1 8.2279 2.4730 4.5286 44 1 7.5634 3.2074 1.9075 45 1 9.0896 3.9940 1.4338 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001131979931.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:47:38 Heat of formation + Delta-G solvation = -82.132477 kcal Electronic energy + Delta-G solvation = -25565.162304 eV Core-core repulsion = 22002.970033 eV Total energy + Delta-G solvation = -3562.192271 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.33514 -40.23331 -38.84586 -36.23381 -35.63059 -34.45776 -32.96046 -31.84887 -31.66376 -30.05970 -27.77426 -26.67816 -24.15487 -23.82570 -22.59775 -21.93800 -21.24464 -20.30489 -18.47284 -18.05118 -17.85121 -17.06913 -16.93834 -16.67168 -16.23928 -15.91282 -15.66340 -15.39131 -14.98501 -14.76818 -14.56621 -14.36519 -14.29238 -13.92562 -13.61110 -13.25346 -12.98639 -12.91520 -12.78309 -12.68337 -12.56659 -12.52970 -12.38086 -12.33522 -12.10925 -12.04774 -11.53570 -11.18975 -11.10175 -11.00188 -10.52099 -10.35611 -10.06419 -9.81789 -8.55424 -7.79429 -5.25109 1.40615 1.43538 1.49987 1.67311 1.88525 2.02826 2.51715 2.69096 3.36760 3.64152 3.66667 4.02303 4.10612 4.14686 4.20036 4.21122 4.23827 4.40578 4.48864 4.52040 4.54973 4.70198 4.78333 4.87594 4.95983 5.00477 5.06010 5.08969 5.14868 5.16164 5.26138 5.31732 5.37431 5.51363 5.61592 5.66243 5.73776 5.78886 5.84238 6.46149 6.60873 6.83785 7.20561 7.35487 7.60376 7.96080 8.47164 9.25559 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.013434 B = 0.005231 C = 0.004309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2083.793104 B = 5351.562179 C = 6496.229491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.109 3.891 3 N -0.718 5.718 4 C 0.502 3.498 5 O -0.559 6.559 6 C -0.151 4.151 7 C 0.498 3.502 8 O -0.567 6.567 9 N -0.691 5.691 10 C 0.130 3.870 11 H 0.054 0.946 12 C -0.109 4.109 13 C -0.116 4.116 14 C 0.152 3.848 15 H 0.008 0.992 16 C -0.127 4.127 17 N -0.593 5.593 18 C -0.234 4.234 19 H 0.083 0.917 20 C -0.059 4.059 21 N -0.941 5.941 22 Si 0.951 3.049 23 H -0.277 1.277 24 H -0.311 1.311 25 H -0.268 1.268 26 C 0.172 3.828 27 H 0.070 0.930 28 H 0.081 0.919 29 H 0.077 0.923 30 H 0.041 0.959 31 H 0.053 0.947 32 H 0.419 0.581 33 H 0.170 0.830 34 H 0.145 0.855 35 H 0.409 0.591 36 H 0.066 0.934 37 H 0.087 0.913 38 H 0.071 0.929 39 H 0.090 0.910 40 H 0.032 0.968 41 H 0.075 0.925 42 H 0.057 0.943 43 H 0.239 0.761 44 H 0.044 0.956 45 H -0.013 1.013 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.101 7.333 -12.316 21.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.015 4.015 3 N -0.374 5.374 4 C 0.287 3.713 5 O -0.436 6.436 6 C -0.194 4.194 7 C 0.283 3.717 8 O -0.445 6.445 9 N -0.344 5.344 10 C 0.024 3.976 11 H 0.072 0.928 12 C -0.147 4.147 13 C -0.155 4.155 14 C 0.047 3.953 15 H 0.025 0.975 16 C -0.185 4.185 17 N -0.317 5.317 18 C -0.364 4.364 19 H 0.101 0.899 20 C -0.254 4.254 21 N -0.588 5.588 22 Si 0.781 3.219 23 H -0.203 1.203 24 H -0.239 1.239 25 H -0.193 1.193 26 C 0.045 3.955 27 H 0.089 0.911 28 H 0.100 0.900 29 H 0.096 0.904 30 H 0.060 0.940 31 H 0.071 0.929 32 H 0.257 0.743 33 H 0.187 0.813 34 H 0.162 0.838 35 H 0.247 0.753 36 H 0.084 0.916 37 H 0.106 0.894 38 H 0.089 0.911 39 H 0.108 0.892 40 H 0.051 0.949 41 H 0.094 0.906 42 H 0.076 0.924 43 H 0.048 0.952 44 H 0.062 0.938 45 H 0.005 0.995 Dipole moment (debyes) X Y Z Total from point charges -15.068 5.807 -12.218 20.250 hybrid contribution -0.164 -0.483 1.374 1.465 sum -15.233 5.324 -10.845 19.442 Atomic orbital electron populations 1.21931 0.91103 1.04175 1.03602 1.21335 0.96642 0.82701 1.00774 1.45885 1.05969 1.09766 1.75772 1.20648 0.82943 0.91490 0.76173 1.90857 1.56376 1.47551 1.48790 1.21608 0.92211 0.95784 1.09753 1.20710 0.90797 0.83786 0.76370 1.90816 1.70979 1.32868 1.49813 1.45647 1.06531 1.08096 1.74108 1.21357 0.80686 0.98589 0.97002 0.92774 1.21646 1.00783 0.92735 0.99512 1.21943 1.01014 0.97901 0.94668 1.20802 0.95355 0.85561 0.93628 0.97453 1.21719 1.00650 0.97167 0.98939 1.44258 1.65153 1.00263 1.22017 1.19441 1.16429 1.04395 0.96160 0.89942 1.25802 0.98542 1.00628 1.00421 1.70177 1.30405 1.16314 1.41917 0.85570 0.79587 0.76666 0.80118 1.20305 1.23866 1.19299 1.20820 0.94021 0.90900 0.89770 0.91131 0.89977 0.90362 0.94004 0.92854 0.74337 0.81286 0.83759 0.75297 0.91565 0.89438 0.91060 0.89191 0.94887 0.90623 0.92418 0.95172 0.93751 0.99457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 10.03 71.98 0.72 -0.94 16 2 C 0.11 2.25 6.39 86.38 0.55 2.80 16 3 N -0.72 -14.86 5.56 -463.06 -2.57 -17.43 16 4 C 0.50 15.76 7.82 87.66 0.69 16.44 16 5 O -0.56 -25.55 14.18 20.39 0.29 -25.26 16 6 C -0.15 -3.76 6.19 29.10 0.18 -3.58 16 7 C 0.50 19.05 7.79 87.66 0.68 19.73 16 8 O -0.57 -29.38 13.84 20.42 0.28 -29.10 16 9 N -0.69 -23.34 4.92 -442.16 -2.17 -25.51 16 10 C 0.13 5.08 2.81 45.07 0.13 5.21 16 11 H 0.05 2.33 7.58 -2.39 -0.02 2.31 16 12 C -0.11 -3.13 5.59 30.62 0.17 -2.96 16 13 C -0.12 -3.11 5.21 30.67 0.16 -2.95 16 14 C 0.15 5.61 3.50 44.98 0.16 5.77 16 15 H 0.01 0.31 8.14 -2.39 -0.02 0.29 16 16 C -0.13 -4.10 7.94 71.98 0.57 -3.53 16 17 N -0.59 -28.30 2.91 -675.23 -1.96 -30.26 16 18 C -0.23 -12.29 8.60 84.03 0.72 -11.57 16 19 H 0.08 4.04 6.21 -2.91 -0.02 4.02 16 20 C -0.06 -3.43 4.96 84.86 0.42 -3.01 16 21 N -0.94 -60.00 11.14 21.65 0.24 -59.76 16 22 Si 0.95 46.67 29.58 68.60 2.03 48.70 16 23 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 24 H -0.31 -16.18 7.11 99.48 0.71 -15.47 16 25 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 26 C 0.17 8.79 4.89 86.36 0.42 9.21 16 27 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 28 H 0.08 0.78 8.14 -2.39 -0.02 0.77 16 29 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 30 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 31 H 0.05 1.22 8.14 -2.39 -0.02 1.21 16 32 H 0.42 4.84 8.47 -92.71 -0.79 4.06 16 33 H 0.17 2.26 8.14 -2.39 -0.02 2.24 16 34 H 0.14 2.93 8.14 -2.39 -0.02 2.91 16 35 H 0.41 10.73 6.77 -92.71 -0.63 10.10 16 36 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 37 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 38 H 0.07 1.72 6.40 -2.39 -0.02 1.70 16 39 H 0.09 1.85 8.14 -2.38 -0.02 1.83 16 40 H 0.03 1.23 7.62 -2.39 -0.02 1.21 16 41 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 42 H 0.06 1.79 7.45 -2.39 -0.02 1.77 16 43 H 0.24 15.30 8.31 -92.71 -0.77 14.53 16 44 H 0.04 2.76 6.06 -2.38 -0.01 2.74 16 45 H -0.01 -0.70 8.14 -2.39 -0.02 -0.72 16 Total: -1.00 -89.53 355.86 1.29 -88.24 By element: Atomic # 1 Polarization: 20.18 SS G_CDS: -0.42 Total: 19.76 kcal Atomic # 6 Polarization: 25.04 SS G_CDS: 5.57 Total: 30.62 kcal Atomic # 7 Polarization: -126.50 SS G_CDS: -6.47 Total: -132.96 kcal Atomic # 8 Polarization: -54.93 SS G_CDS: 0.57 Total: -54.35 kcal Atomic # 14 Polarization: 46.67 SS G_CDS: 2.03 Total: 48.70 kcal Total: -89.53 1.29 -88.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001131979931.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.108 kcal (2) G-P(sol) polarization free energy of solvation -89.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.240 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds