Wall clock time and date at job start Tue Mar 31 2020 03:45:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46506 * 109.46904 * 2 1 4 4 C 1.36935 * 119.99842 * 275.73532 * 3 2 1 5 5 H 1.08006 * 120.00004 * 33.26641 * 4 3 2 6 6 C 1.38813 * 120.00232 * 213.26772 * 4 3 2 7 7 N 1.31628 * 119.99274 * 17.27220 * 6 4 3 8 8 Si 1.86791 * 120.00564 * 197.27140 * 6 4 3 9 9 H 1.48511 * 109.46802 * 0.02562 * 8 6 4 10 10 H 1.48494 * 109.47203 * 119.99593 * 8 6 4 11 11 H 1.48496 * 109.47560 * 240.00165 * 8 6 4 12 12 C 1.46497 * 119.99913 * 95.72902 * 3 2 1 13 13 H 1.08999 * 109.46846 * 180.08293 * 12 3 2 14 14 C 1.53000 * 109.46779 * 60.09245 * 12 3 2 15 15 C 1.52994 * 109.47770 * 300.08748 * 12 3 2 16 16 N 1.46500 * 109.47124 * 305.00369 * 15 12 3 17 17 C 1.34775 * 119.99965 * 179.97438 * 16 15 12 18 18 O 1.21279 * 120.00324 * 359.97438 * 17 16 15 19 19 C 1.50704 * 119.99750 * 179.97438 * 17 16 15 20 20 C 1.53501 * 114.20677 * 180.02562 * 19 17 16 21 21 N 1.47067 * 87.98795 * 139.84699 * 20 19 17 22 22 C 1.34777 * 136.05650 * 152.83961 * 21 20 19 23 23 C 1.50694 * 119.99784 * 180.02562 * 22 21 20 24 24 O 1.21279 * 119.99777 * 0.02562 * 22 21 20 25 25 C 1.47072 * 87.88439 * 333.10268 * 21 20 19 26 26 H 1.09003 * 109.46836 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.47370 * 299.99872 * 1 2 3 28 28 H 1.08997 * 109.47583 * 60.00644 * 1 2 3 29 29 H 1.09000 * 109.47040 * 240.00436 * 2 1 3 30 30 H 1.09003 * 109.47180 * 119.99511 * 2 1 3 31 31 H 0.97003 * 119.99490 * 180.02562 * 7 6 4 32 32 H 1.08993 * 109.47658 * 59.99442 * 14 12 3 33 33 H 1.09007 * 109.47122 * 179.97438 * 14 12 3 34 34 H 1.09002 * 109.47090 * 299.99406 * 14 12 3 35 35 H 1.08994 * 109.47512 * 185.00188 * 15 12 3 36 36 H 1.09003 * 109.46938 * 64.99734 * 15 12 3 37 37 H 0.97001 * 119.99810 * 359.97438 * 16 15 12 38 38 H 1.08993 * 113.28767 * 46.92596 * 19 17 16 39 39 H 1.09002 * 113.46487 * 25.06984 * 20 19 17 40 40 H 1.08998 * 113.52037 * 254.63972 * 20 19 17 41 41 H 1.09007 * 109.47240 * 269.99780 * 23 22 21 42 42 H 1.09001 * 109.47104 * 150.00089 * 23 22 21 43 43 H 1.08995 * 109.47764 * 30.00006 * 23 22 21 44 44 H 1.09000 * 113.46765 * 141.67722 * 25 21 20 45 45 H 1.09001 * 113.46404 * 272.11235 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1347 2.0663 -1.1800 5 1 1.4368 1.8810 -1.9831 6 6 3.1499 2.9988 -1.3440 7 7 4.1870 2.9919 -0.5334 8 14 3.0442 4.2633 -2.7147 9 1 1.7877 4.0599 -3.4799 10 1 3.0519 5.6284 -2.1305 11 1 4.2084 4.1071 -3.6232 12 6 2.3818 2.0297 1.2624 13 1 2.7188 3.0471 1.0643 14 6 3.5076 1.2414 1.9348 15 6 1.1629 2.0669 2.1863 16 7 0.0465 2.7173 1.4958 17 6 -1.1390 2.8630 2.1201 18 8 -1.2818 2.4551 3.2534 19 6 -2.2873 3.5326 1.4100 20 6 -3.5728 3.6284 2.2434 21 7 -3.7639 4.9808 1.6981 22 6 -4.8143 5.7893 1.4540 23 6 -4.5905 7.1581 0.8650 24 8 -5.9395 5.4150 1.7083 25 6 -2.3049 5.0602 1.5303 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5137 -0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 4.8962 3.6437 -0.6478 32 1 4.3760 1.2149 1.2766 33 1 3.7785 1.7241 2.8739 34 1 3.1707 0.2239 2.1328 35 1 1.4079 2.6270 3.0887 36 1 0.8801 1.0493 2.4557 37 1 0.1605 3.0432 0.5893 38 1 -2.4387 3.1661 0.3948 39 1 -3.3950 3.6151 3.3187 40 1 -4.3446 2.9230 1.9352 41 1 -4.4536 7.8816 1.6688 42 1 -5.4552 7.4412 0.2648 43 1 -3.7009 7.1419 0.2354 44 1 -2.0002 5.5696 0.6161 45 1 -1.7861 5.4322 2.4137 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001152968893.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:45:59 Heat of formation + Delta-G solvation = -16.240731 kcal Electronic energy + Delta-G solvation = -25247.560202 eV Core-core repulsion = 21688.225211 eV Total energy + Delta-G solvation = -3559.334991 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.88662 -39.08502 -37.67418 -36.76261 -33.74247 -31.94959 -31.47829 -31.01539 -28.94543 -28.20765 -26.12965 -25.79491 -24.00498 -23.05032 -21.71358 -19.83801 -19.28361 -19.09667 -17.51730 -17.09077 -16.83045 -16.01325 -15.60099 -15.37623 -14.98848 -14.70343 -14.35693 -13.93143 -13.57625 -13.21826 -13.06942 -12.81659 -12.74631 -12.63921 -12.55184 -12.37027 -12.13773 -11.99023 -11.88932 -11.55622 -11.13722 -11.02085 -10.96760 -10.87848 -10.70534 -10.34397 -10.14924 -10.12049 -9.70458 -9.53121 -9.49096 -8.89978 -8.59740 -8.49454 -6.73950 -5.95410 -3.44212 2.44365 2.61176 2.80902 3.23587 3.34265 3.34933 3.65573 4.12800 4.31737 4.35061 4.72710 4.90444 5.01019 5.14476 5.18385 5.19699 5.25210 5.30463 5.34629 5.45789 5.52487 5.68913 5.83573 5.93525 5.99936 6.11888 6.20012 6.32102 6.42370 6.49304 6.56295 6.62599 6.78012 6.85749 6.96742 7.10396 7.41306 7.50938 7.51858 7.70766 7.95695 8.03034 8.36016 8.59422 9.09135 9.70414 10.27731 11.11119 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.014749 B = 0.004467 C = 0.003815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1897.997075 B = 6266.383790 C = 7337.268995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.140 3.860 3 N -0.583 5.583 4 C -0.263 4.263 5 H 0.064 0.936 6 C 0.012 3.988 7 N -0.890 5.890 8 Si 0.895 3.105 9 H -0.277 1.277 10 H -0.289 1.289 11 H -0.290 1.290 12 C 0.177 3.823 13 H 0.100 0.900 14 C -0.145 4.145 15 C 0.101 3.899 16 N -0.694 5.694 17 C 0.519 3.481 18 O -0.554 6.554 19 C -0.153 4.153 20 C 0.126 3.874 21 N -0.649 5.649 22 C 0.541 3.459 23 C -0.167 4.167 24 O -0.550 6.550 25 C 0.118 3.882 26 H 0.032 0.968 27 H 0.051 0.949 28 H 0.046 0.954 29 H 0.040 0.960 30 H 0.036 0.964 31 H 0.254 0.746 32 H 0.078 0.922 33 H 0.033 0.967 34 H 0.030 0.970 35 H 0.053 0.947 36 H 0.055 0.945 37 H 0.412 0.588 38 H 0.127 0.873 39 H 0.100 0.900 40 H 0.082 0.918 41 H 0.093 0.907 42 H 0.093 0.907 43 H 0.081 0.919 44 H 0.090 0.910 45 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.394 4.426 2.671 9.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.014 3.986 3 N -0.305 5.305 4 C -0.393 4.393 5 H 0.082 0.918 6 C -0.188 4.188 7 N -0.532 5.532 8 Si 0.725 3.275 9 H -0.202 1.202 10 H -0.215 1.215 11 H -0.217 1.217 12 C 0.069 3.931 13 H 0.118 0.882 14 C -0.204 4.204 15 C -0.025 4.025 16 N -0.344 5.344 17 C 0.303 3.697 18 O -0.433 6.433 19 C -0.175 4.175 20 C 0.003 3.997 21 N -0.385 5.385 22 C 0.332 3.668 23 C -0.226 4.226 24 O -0.427 6.427 25 C -0.005 4.005 26 H 0.052 0.948 27 H 0.070 0.930 28 H 0.065 0.935 29 H 0.059 0.941 30 H 0.055 0.945 31 H 0.064 0.936 32 H 0.097 0.903 33 H 0.052 0.948 34 H 0.049 0.951 35 H 0.071 0.929 36 H 0.073 0.927 37 H 0.249 0.751 38 H 0.145 0.855 39 H 0.118 0.882 40 H 0.101 0.899 41 H 0.112 0.888 42 H 0.112 0.888 43 H 0.100 0.900 44 H 0.109 0.891 45 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -9.108 4.196 3.537 10.633 hybrid contribution 0.273 0.784 -1.196 1.456 sum -8.835 4.980 2.341 10.408 Atomic orbital electron populations 1.22447 1.00012 0.99072 1.01444 1.20760 0.91688 0.87441 0.98750 1.43908 1.75988 1.08289 1.02286 1.19124 1.08629 1.18115 0.93388 0.91800 1.25157 0.94514 1.01385 0.97762 1.70022 1.07858 1.35855 1.39505 0.86352 0.77674 0.81551 0.81921 1.20206 1.21547 1.21704 1.20489 0.88877 0.99531 0.84173 0.88227 1.22028 1.01152 0.97987 0.99260 1.22205 0.88114 0.96364 0.95810 1.45993 1.10812 1.58436 1.19149 1.19915 0.83603 0.79795 0.86369 1.90677 1.83218 1.50831 1.18623 1.23077 0.95401 0.96771 1.02257 1.22818 0.94333 0.83040 0.99496 1.49677 1.06972 1.18394 1.63491 1.20385 0.82748 0.86014 0.77668 1.21835 1.04781 0.93378 1.02634 1.90727 1.22524 1.75603 1.53886 1.22865 0.80236 0.94320 1.03117 0.94844 0.92980 0.93458 0.94131 0.94515 0.93578 0.90293 0.94835 0.95137 0.92853 0.92713 0.75075 0.85517 0.88205 0.89947 0.88802 0.88805 0.90033 0.89144 0.88894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.87 9.87 37.16 0.37 -2.50 16 2 C 0.14 2.67 5.67 -4.04 -0.02 2.65 16 3 N -0.58 -12.27 1.85 -165.66 -0.31 -12.58 16 4 C -0.26 -6.14 9.26 -15.06 -0.14 -6.28 16 5 H 0.06 1.51 7.89 -52.48 -0.41 1.10 16 6 C 0.01 0.29 4.85 -17.43 -0.08 0.21 16 7 N -0.89 -22.53 10.60 55.49 0.59 -21.94 16 8 Si 0.90 19.21 29.59 -169.99 -5.03 14.18 16 9 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 10 H -0.29 -6.23 7.11 56.52 0.40 -5.83 16 11 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 12 C 0.18 3.52 1.92 -67.94 -0.13 3.39 16 13 H 0.10 2.26 6.04 -51.93 -0.31 1.95 16 14 C -0.14 -2.81 9.05 37.16 0.34 -2.47 16 15 C 0.10 1.76 4.34 -4.04 -0.02 1.74 16 16 N -0.69 -10.95 3.99 -60.30 -0.24 -11.19 16 17 C 0.52 7.75 7.17 -10.98 -0.08 7.67 16 18 O -0.55 -10.03 15.95 5.56 0.09 -9.95 16 19 C -0.15 -1.76 4.47 -91.39 -0.41 -2.17 16 20 C 0.13 1.54 7.97 -8.50 -0.07 1.48 16 21 N -0.65 -7.61 3.69 -185.36 -0.68 -8.29 16 22 C 0.54 6.84 8.19 -10.99 -0.09 6.75 16 23 C -0.17 -1.35 10.19 36.00 0.37 -0.98 16 24 O -0.55 -9.30 17.88 5.56 0.10 -9.20 16 25 C 0.12 1.16 7.83 -8.63 -0.07 1.09 16 26 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 27 H 0.05 0.89 4.99 -51.93 -0.26 0.63 16 28 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.04 0.81 8.09 -51.93 -0.42 0.39 16 30 H 0.04 0.68 6.45 -51.93 -0.33 0.35 16 31 H 0.25 6.34 8.31 -40.82 -0.34 6.01 16 32 H 0.08 1.76 7.39 -51.93 -0.38 1.38 16 33 H 0.03 0.58 8.14 -51.92 -0.42 0.16 16 34 H 0.03 0.55 6.67 -51.93 -0.35 0.20 16 35 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 36 H 0.05 1.00 7.05 -51.93 -0.37 0.63 16 37 H 0.41 6.62 7.90 -40.82 -0.32 6.30 16 38 H 0.13 1.33 8.14 -51.93 -0.42 0.91 16 39 H 0.10 1.30 7.46 -51.93 -0.39 0.92 16 40 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 41 H 0.09 0.63 8.14 -51.92 -0.42 0.20 16 42 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 43 H 0.08 0.53 7.76 -51.93 -0.40 0.12 16 44 H 0.09 0.71 7.96 -51.93 -0.41 0.29 16 45 H 0.09 0.89 8.10 -51.93 -0.42 0.47 16 LS Contribution 362.83 15.07 5.47 5.47 Total: -1.00 -29.10 362.83 -7.36 -36.46 By element: Atomic # 1 Polarization: 13.78 SS G_CDS: -7.30 Total: 6.48 kcal Atomic # 6 Polarization: 10.59 SS G_CDS: -0.04 Total: 10.55 kcal Atomic # 7 Polarization: -53.35 SS G_CDS: -0.64 Total: -54.00 kcal Atomic # 8 Polarization: -19.33 SS G_CDS: 0.19 Total: -19.14 kcal Atomic # 14 Polarization: 19.21 SS G_CDS: -5.03 Total: 14.18 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -29.10 -7.36 -36.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001152968893.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.215 kcal (2) G-P(sol) polarization free energy of solvation -29.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.456 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds