Wall clock time and date at job start Tue Mar 31 2020 03:45:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46506 * 109.46904 * 2 1 4 4 C 1.36935 * 119.99842 * 275.73532 * 3 2 1 5 5 H 1.08006 * 120.00004 * 33.26641 * 4 3 2 6 6 C 1.38813 * 120.00232 * 213.26772 * 4 3 2 7 7 N 1.31628 * 119.99274 * 17.27220 * 6 4 3 8 8 Si 1.86791 * 120.00564 * 197.27140 * 6 4 3 9 9 H 1.48511 * 109.46802 * 0.02562 * 8 6 4 10 10 H 1.48494 * 109.47203 * 119.99593 * 8 6 4 11 11 H 1.48496 * 109.47560 * 240.00165 * 8 6 4 12 12 C 1.46497 * 119.99913 * 95.72902 * 3 2 1 13 13 H 1.08999 * 109.46846 * 180.08293 * 12 3 2 14 14 C 1.53000 * 109.46779 * 60.09245 * 12 3 2 15 15 C 1.52994 * 109.47770 * 300.08748 * 12 3 2 16 16 N 1.46500 * 109.47124 * 305.00369 * 15 12 3 17 17 C 1.34775 * 119.99965 * 179.97438 * 16 15 12 18 18 O 1.21279 * 120.00324 * 359.97438 * 17 16 15 19 19 C 1.50704 * 119.99750 * 179.97438 * 17 16 15 20 20 C 1.53501 * 114.20677 * 180.02562 * 19 17 16 21 21 N 1.47067 * 87.98795 * 139.84699 * 20 19 17 22 22 C 1.34777 * 136.05650 * 152.83961 * 21 20 19 23 23 C 1.50694 * 119.99784 * 180.02562 * 22 21 20 24 24 O 1.21279 * 119.99777 * 0.02562 * 22 21 20 25 25 C 1.47072 * 87.88439 * 333.10268 * 21 20 19 26 26 H 1.09003 * 109.46836 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.47370 * 299.99872 * 1 2 3 28 28 H 1.08997 * 109.47583 * 60.00644 * 1 2 3 29 29 H 1.09000 * 109.47040 * 240.00436 * 2 1 3 30 30 H 1.09003 * 109.47180 * 119.99511 * 2 1 3 31 31 H 0.97003 * 119.99490 * 180.02562 * 7 6 4 32 32 H 1.08993 * 109.47658 * 59.99442 * 14 12 3 33 33 H 1.09007 * 109.47122 * 179.97438 * 14 12 3 34 34 H 1.09002 * 109.47090 * 299.99406 * 14 12 3 35 35 H 1.08994 * 109.47512 * 185.00188 * 15 12 3 36 36 H 1.09003 * 109.46938 * 64.99734 * 15 12 3 37 37 H 0.97001 * 119.99810 * 359.97438 * 16 15 12 38 38 H 1.08993 * 113.28767 * 46.92596 * 19 17 16 39 39 H 1.09002 * 113.46487 * 25.06984 * 20 19 17 40 40 H 1.08998 * 113.52037 * 254.63972 * 20 19 17 41 41 H 1.09007 * 109.47240 * 269.99780 * 23 22 21 42 42 H 1.09001 * 109.47104 * 150.00089 * 23 22 21 43 43 H 1.08995 * 109.47764 * 30.00006 * 23 22 21 44 44 H 1.09000 * 113.46765 * 141.67722 * 25 21 20 45 45 H 1.09001 * 113.46404 * 272.11235 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1347 2.0663 -1.1800 5 1 1.4368 1.8810 -1.9831 6 6 3.1499 2.9988 -1.3440 7 7 4.1870 2.9919 -0.5334 8 14 3.0442 4.2633 -2.7147 9 1 1.7877 4.0599 -3.4799 10 1 3.0519 5.6284 -2.1305 11 1 4.2084 4.1071 -3.6232 12 6 2.3818 2.0297 1.2624 13 1 2.7188 3.0471 1.0643 14 6 3.5076 1.2414 1.9348 15 6 1.1629 2.0669 2.1863 16 7 0.0465 2.7173 1.4958 17 6 -1.1390 2.8630 2.1201 18 8 -1.2818 2.4551 3.2534 19 6 -2.2873 3.5326 1.4100 20 6 -3.5728 3.6284 2.2434 21 7 -3.7639 4.9808 1.6981 22 6 -4.8143 5.7893 1.4540 23 6 -4.5905 7.1581 0.8650 24 8 -5.9395 5.4150 1.7083 25 6 -2.3049 5.0602 1.5303 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5137 -0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 4.8962 3.6437 -0.6478 32 1 4.3760 1.2149 1.2766 33 1 3.7785 1.7241 2.8739 34 1 3.1707 0.2239 2.1328 35 1 1.4079 2.6270 3.0887 36 1 0.8801 1.0493 2.4557 37 1 0.1605 3.0432 0.5893 38 1 -2.4387 3.1661 0.3948 39 1 -3.3950 3.6151 3.3187 40 1 -4.3446 2.9230 1.9352 41 1 -4.4536 7.8816 1.6688 42 1 -5.4552 7.4412 0.2648 43 1 -3.7009 7.1419 0.2354 44 1 -2.0002 5.5696 0.6161 45 1 -1.7861 5.4322 2.4137 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001152968893.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:45:59 Heat of formation + Delta-G solvation = -34.209148 kcal Electronic energy + Delta-G solvation = -25248.339371 eV Core-core repulsion = 21688.225211 eV Total energy + Delta-G solvation = -3560.114160 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.90276 -40.27807 -38.91399 -38.16335 -35.18203 -33.66825 -32.77249 -32.13698 -29.98303 -29.67588 -27.15274 -26.98253 -25.73582 -24.19632 -23.20737 -21.09459 -20.81888 -20.01743 -18.85295 -18.33632 -17.96944 -17.12239 -16.90639 -16.60196 -16.32949 -16.12801 -15.75967 -15.29762 -14.94811 -14.29959 -14.28433 -14.12351 -13.90876 -13.75462 -13.54789 -13.49982 -13.37163 -13.25532 -13.07699 -12.93645 -12.77651 -12.65482 -12.50974 -12.35860 -11.96833 -11.86800 -11.76356 -11.30801 -11.19849 -11.11610 -10.73205 -10.38964 -9.90360 -9.82965 -8.47740 -7.76817 -5.26977 1.50567 1.53125 1.60190 1.63058 1.66395 1.70316 2.45732 2.60149 3.17636 3.38103 3.49427 3.69737 3.83180 3.99162 4.15363 4.29006 4.33010 4.44679 4.50112 4.50958 4.58114 4.62319 4.64083 4.69572 4.74578 4.85861 4.94141 4.98170 5.00766 5.03381 5.06698 5.11654 5.27439 5.37433 5.57415 5.64239 5.76001 5.82043 5.92991 6.55326 6.60987 6.76725 7.01335 7.29353 7.35725 7.97954 8.50694 9.27237 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.014749 B = 0.004467 C = 0.003815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1897.997075 B = 6266.383790 C = 7337.268995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.138 3.862 3 N -0.591 5.591 4 C -0.258 4.258 5 H 0.063 0.937 6 C -0.030 4.030 7 N -0.916 5.916 8 Si 0.951 3.049 9 H -0.266 1.266 10 H -0.289 1.289 11 H -0.306 1.306 12 C 0.184 3.816 13 H 0.073 0.927 14 C -0.137 4.137 15 C 0.115 3.885 16 N -0.692 5.692 17 C 0.525 3.475 18 O -0.586 6.586 19 C -0.143 4.143 20 C 0.119 3.881 21 N -0.648 5.648 22 C 0.533 3.467 23 C -0.158 4.158 24 O -0.602 6.602 25 C 0.126 3.874 26 H 0.051 0.949 27 H 0.049 0.951 28 H 0.044 0.956 29 H 0.028 0.972 30 H 0.041 0.959 31 H 0.247 0.753 32 H 0.046 0.954 33 H 0.049 0.951 34 H 0.040 0.960 35 H 0.056 0.944 36 H 0.050 0.950 37 H 0.413 0.587 38 H 0.144 0.856 39 H 0.089 0.911 40 H 0.078 0.922 41 H 0.111 0.889 42 H 0.098 0.902 43 H 0.104 0.896 44 H 0.121 0.879 45 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.177 5.337 2.001 10.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.013 3.987 3 N -0.314 5.314 4 C -0.388 4.388 5 H 0.080 0.920 6 C -0.228 4.228 7 N -0.560 5.560 8 Si 0.781 3.219 9 H -0.191 1.191 10 H -0.216 1.216 11 H -0.234 1.234 12 C 0.076 3.924 13 H 0.091 0.909 14 C -0.197 4.197 15 C -0.011 4.011 16 N -0.341 5.341 17 C 0.311 3.689 18 O -0.467 6.467 19 C -0.165 4.165 20 C -0.005 4.005 21 N -0.383 5.383 22 C 0.326 3.674 23 C -0.217 4.217 24 O -0.484 6.484 25 C 0.004 3.996 26 H 0.070 0.930 27 H 0.068 0.932 28 H 0.063 0.937 29 H 0.046 0.954 30 H 0.059 0.941 31 H 0.057 0.943 32 H 0.065 0.935 33 H 0.068 0.932 34 H 0.059 0.941 35 H 0.074 0.926 36 H 0.068 0.932 37 H 0.250 0.750 38 H 0.161 0.839 39 H 0.107 0.893 40 H 0.096 0.904 41 H 0.129 0.871 42 H 0.117 0.883 43 H 0.123 0.877 44 H 0.139 0.861 45 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -9.889 5.105 2.856 11.490 hybrid contribution 0.539 0.409 -0.955 1.170 sum -9.350 5.514 1.901 11.020 Atomic orbital electron populations 1.22254 0.97877 1.00212 1.01107 1.20828 0.93203 0.86345 0.98367 1.44040 1.76112 1.09065 1.02134 1.19278 1.07920 1.17719 0.93917 0.91979 1.25694 0.94453 1.03039 0.99577 1.70158 1.08429 1.36371 1.41045 0.85477 0.77174 0.79656 0.79614 1.19067 1.21578 1.23431 1.20335 0.89868 0.97956 0.84215 0.90879 1.21909 0.99791 0.98786 0.99195 1.21879 0.87668 0.96352 0.95241 1.45926 1.10758 1.58403 1.19056 1.20350 0.83762 0.78969 0.85866 1.90671 1.83698 1.52166 1.20202 1.23012 0.93203 0.98004 1.02248 1.22794 0.94711 0.83834 0.99114 1.49756 1.07879 1.17945 1.62755 1.21287 0.81969 0.87283 0.76879 1.21874 1.06069 0.90463 1.03312 1.90701 1.24595 1.76911 1.56206 1.22973 0.78855 0.92957 1.04858 0.93006 0.93213 0.93734 0.95359 0.94075 0.94331 0.93481 0.93234 0.94135 0.92623 0.93201 0.74974 0.83850 0.89336 0.90359 0.87086 0.88316 0.87729 0.86059 0.88426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.90 9.87 71.98 0.71 -4.19 16 2 C 0.14 5.11 5.67 86.38 0.49 5.60 16 3 N -0.59 -24.43 1.85 -678.03 -1.25 -25.69 16 4 C -0.26 -11.82 9.26 84.03 0.78 -11.04 16 5 H 0.06 2.85 7.89 -2.91 -0.02 2.82 16 6 C -0.03 -1.44 4.85 84.86 0.41 -1.03 16 7 N -0.92 -46.72 10.60 21.65 0.23 -46.49 16 8 Si 0.95 39.01 29.59 68.60 2.03 41.04 16 9 H -0.27 -10.34 7.11 99.48 0.71 -9.63 16 10 H -0.29 -11.78 7.11 99.48 0.71 -11.07 16 11 H -0.31 -13.32 7.11 99.48 0.71 -12.61 16 12 C 0.18 7.20 1.92 44.99 0.09 7.28 16 13 H 0.07 3.32 6.04 -2.39 -0.01 3.30 16 14 C -0.14 -5.29 9.05 71.98 0.65 -4.64 16 15 C 0.11 3.88 4.34 86.38 0.37 4.25 16 16 N -0.69 -20.68 3.99 -463.07 -1.85 -22.52 16 17 C 0.52 14.77 7.17 87.66 0.63 15.40 16 18 O -0.59 -20.63 15.95 -3.03 -0.05 -20.68 16 19 C -0.14 -2.97 4.47 -11.29 -0.05 -3.02 16 20 C 0.12 2.79 7.97 83.18 0.66 3.46 16 21 N -0.65 -13.92 3.69 -858.74 -3.17 -17.09 16 22 C 0.53 12.61 8.19 87.66 0.72 13.33 16 23 C -0.16 -2.07 10.19 71.23 0.73 -1.35 16 24 O -0.60 -20.27 17.88 -3.03 -0.05 -20.32 16 25 C 0.13 2.08 7.83 83.10 0.65 2.73 16 26 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 27 H 0.05 1.59 4.99 -2.38 -0.01 1.58 16 28 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 29 H 0.03 1.10 8.09 -2.39 -0.02 1.08 16 30 H 0.04 1.47 6.45 -2.39 -0.02 1.46 16 31 H 0.25 12.52 8.31 -92.71 -0.77 11.75 16 32 H 0.05 2.11 7.39 -2.39 -0.02 2.09 16 33 H 0.05 1.70 8.14 -2.38 -0.02 1.68 16 34 H 0.04 1.44 6.67 -2.39 -0.02 1.42 16 35 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 36 H 0.05 1.75 7.05 -2.39 -0.02 1.73 16 37 H 0.41 12.46 7.90 -92.71 -0.73 11.73 16 38 H 0.14 2.57 8.14 -2.39 -0.02 2.55 16 39 H 0.09 2.29 7.46 -2.39 -0.02 2.28 16 40 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 41 H 0.11 1.11 8.14 -2.38 -0.02 1.09 16 42 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 43 H 0.10 0.90 7.76 -2.39 -0.02 0.88 16 44 H 0.12 1.33 7.96 -2.39 -0.02 1.31 16 45 H 0.10 1.58 8.10 -2.39 -0.02 1.57 16 Total: -1.00 -63.17 362.83 2.98 -60.19 By element: Atomic # 1 Polarization: 24.51 SS G_CDS: 0.25 Total: 24.76 kcal Atomic # 6 Polarization: 19.96 SS G_CDS: 6.84 Total: 26.80 kcal Atomic # 7 Polarization: -105.75 SS G_CDS: -6.04 Total: -111.79 kcal Atomic # 8 Polarization: -40.89 SS G_CDS: -0.10 Total: -41.00 kcal Atomic # 14 Polarization: 39.01 SS G_CDS: 2.03 Total: 41.04 kcal Total: -63.17 2.98 -60.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001152968893.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.981 kcal (2) G-P(sol) polarization free energy of solvation -63.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds