Wall clock time and date at job start Tue Mar 31 2020 03:53:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.21287 * 119.99862 * 2 1 4 4 N 1.34773 * 120.00282 * 179.97438 * 2 1 3 5 5 C 1.46496 * 120.00380 * 179.97438 * 4 2 1 6 6 C 1.52999 * 109.47399 * 154.99923 * 5 4 2 7 7 C 1.52996 * 109.47175 * 180.02562 * 6 5 4 8 8 C 1.52992 * 109.47231 * 299.99937 * 7 6 5 9 9 C 1.50706 * 109.47274 * 180.02562 * 8 7 6 10 10 O 1.21281 * 119.99699 * 0.02562 * 9 8 7 11 11 N 1.34773 * 120.00080 * 180.02562 * 9 8 7 12 12 C 1.46506 * 119.99969 * 180.02562 * 11 9 8 13 13 C 1.52998 * 109.47237 * 179.72043 * 12 11 9 14 14 N 1.46496 * 109.47238 * 179.97438 * 13 12 11 15 15 C 1.36936 * 120.00309 * 180.02562 * 14 13 12 16 16 H 1.07997 * 119.99552 * 0.02562 * 15 14 13 17 17 C 1.38815 * 120.00076 * 180.02562 * 15 14 13 18 18 N 1.31617 * 119.99912 * 179.97438 * 17 15 14 19 19 Si 1.86795 * 120.00122 * 0.02562 * 17 15 14 20 20 H 1.48494 * 109.47731 * 89.99568 * 19 17 15 21 21 H 1.48496 * 109.47015 * 209.99975 * 19 17 15 22 22 H 1.48504 * 109.46998 * 329.99267 * 19 17 15 23 23 C 1.53004 * 109.47051 * 60.00474 * 8 7 6 24 24 C 1.53002 * 109.47047 * 275.00358 * 5 4 2 25 25 H 1.09005 * 109.46905 * 270.00330 * 1 2 3 26 26 H 1.08997 * 109.47701 * 29.99932 * 1 2 3 27 27 H 1.09002 * 109.47332 * 150.00242 * 1 2 3 28 28 H 0.96998 * 119.99726 * 0.02562 * 4 2 1 29 29 H 1.09001 * 109.46807 * 34.99895 * 5 4 2 30 30 H 1.09010 * 109.46564 * 60.00068 * 6 5 4 31 31 H 1.09004 * 109.46974 * 300.00622 * 6 5 4 32 32 H 1.09004 * 109.46699 * 180.02562 * 7 6 5 33 33 H 1.08993 * 109.47124 * 60.00287 * 7 6 5 34 34 H 1.08998 * 109.47794 * 300.00366 * 8 7 6 35 35 H 0.97005 * 120.00161 * 359.72088 * 11 9 8 36 36 H 1.09001 * 109.46512 * 299.72412 * 12 11 9 37 37 H 1.08998 * 109.47174 * 59.71534 * 12 11 9 38 38 H 1.09000 * 109.46986 * 299.99958 * 13 12 11 39 39 H 1.09002 * 109.46857 * 60.00093 * 13 12 11 40 40 H 0.97005 * 119.99809 * 0.02562 * 14 13 12 41 41 H 0.97000 * 120.00284 * 179.97438 * 18 17 15 42 42 H 1.08993 * 109.47257 * 59.99678 * 23 8 7 43 43 H 1.09001 * 109.47281 * 179.97438 * 23 8 7 44 44 H 1.09001 * 109.46939 * 299.99457 * 24 5 4 45 45 H 1.08991 * 109.47217 * 59.99932 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1671 0.0005 5 6 3.6458 -1.1672 0.0000 6 6 4.1561 -2.4741 0.6103 7 6 5.6861 -2.4738 0.6102 8 6 6.1960 -2.3487 -0.8268 9 6 7.7031 -2.3491 -0.8269 10 8 8.3095 -2.4408 0.2194 11 7 8.3769 -2.2474 -1.9896 12 6 9.8420 -2.2483 -1.9897 13 6 10.3520 -2.1295 -3.4273 14 7 11.8169 -2.1298 -3.4274 15 6 12.5016 -2.0317 -4.6092 16 1 11.9616 -1.9537 -5.5412 17 6 13.8898 -2.0325 -4.6093 18 7 14.5478 -1.9387 -5.7452 19 14 14.8238 -2.1682 -2.9973 20 1 15.0704 -3.5992 -2.6869 21 1 16.1217 -1.4565 -3.1159 22 1 14.0217 -1.5564 -1.9075 23 6 5.6859 -1.0417 -1.4371 24 6 4.1553 -1.0423 -1.4374 25 1 -0.3633 0.0001 1.0277 26 1 -0.3634 0.8899 -0.5138 27 1 -0.3634 -0.8900 -0.5138 28 1 1.6959 -2.0072 0.0005 29 1 4.0094 -0.3249 0.5887 30 1 3.7925 -3.3163 0.0214 31 1 3.7931 -2.5630 1.6342 32 1 6.0495 -3.4051 1.0446 33 1 6.0492 -1.6316 1.1992 34 1 5.8329 -3.1908 -1.4159 35 1 7.8919 -2.1781 -2.8269 36 1 10.2058 -1.4040 -1.4041 37 1 10.2048 -3.1779 -1.5511 38 1 9.9881 -2.9738 -4.0128 39 1 9.9891 -1.1999 -3.8659 40 1 12.3019 -2.1995 -2.5902 41 1 15.5178 -1.9389 -5.7453 42 1 6.0490 -0.1996 -0.8481 43 1 6.0495 -0.9524 -2.4607 44 1 3.7917 -1.8846 -2.0261 45 1 3.7918 -0.1113 -1.8721 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001153632089.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:53:40 Heat of formation + Delta-G solvation = -85.665330 kcal Electronic energy + Delta-G solvation = -23613.388988 eV Core-core repulsion = 20051.043521 eV Total energy + Delta-G solvation = -3562.345467 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.64184 -39.78125 -37.85443 -35.86887 -34.53615 -33.95151 -31.64135 -31.14127 -31.08336 -29.22408 -27.87273 -24.15691 -23.15707 -22.83512 -21.49617 -20.91811 -20.75978 -19.82433 -17.87146 -17.28966 -17.09954 -16.74938 -15.88547 -15.76749 -15.44201 -14.74813 -14.54277 -14.40795 -14.16775 -14.11719 -13.77118 -13.51510 -13.27157 -13.07477 -12.93466 -12.66869 -12.62242 -12.45328 -11.85437 -11.72025 -11.53843 -11.51105 -11.48945 -11.00126 -10.86801 -10.85589 -10.66057 -10.25118 -10.17146 -9.72917 -9.62333 -9.44782 -9.04059 -8.89229 -7.31551 -5.81117 -3.18540 2.25064 2.64423 2.77534 3.18843 3.37658 3.41383 3.45376 4.22698 4.26520 4.38933 4.50800 4.56636 4.68402 4.75710 4.77409 4.92071 4.95850 4.96932 5.05536 5.09522 5.28558 5.31951 5.37446 5.43202 5.45708 5.59563 5.63421 5.64816 5.68071 5.77073 5.79764 5.93277 5.96109 6.01690 6.11717 6.38543 6.57617 6.61849 7.08460 7.54092 7.83137 7.92302 8.25259 8.36941 9.14613 9.86970 10.05311 11.36674 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.035173 B = 0.002242 C = 0.002169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 795.882264 B =12485.204080 C =12908.784324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.508 3.492 3 O -0.545 6.545 4 N -0.728 5.728 5 C 0.140 3.860 6 C -0.124 4.124 7 C -0.095 4.095 8 C -0.107 4.107 9 C 0.514 3.486 10 O -0.542 6.542 11 N -0.722 5.722 12 C 0.107 3.893 13 C 0.149 3.851 14 N -0.752 5.752 15 C -0.249 4.249 16 H 0.091 0.909 17 C 0.007 3.993 18 N -0.931 5.931 19 Si 0.885 3.115 20 H -0.283 1.283 21 H -0.289 1.289 22 H -0.276 1.276 23 C -0.109 4.109 24 C -0.125 4.125 25 H 0.093 0.907 26 H 0.092 0.908 27 H 0.079 0.921 28 H 0.400 0.600 29 H 0.090 0.910 30 H 0.069 0.931 31 H 0.072 0.928 32 H 0.076 0.924 33 H 0.074 0.926 34 H 0.098 0.902 35 H 0.401 0.599 36 H 0.068 0.932 37 H 0.068 0.932 38 H 0.033 0.967 39 H 0.033 0.967 40 H 0.363 0.637 41 H 0.261 0.739 42 H 0.072 0.928 43 H 0.074 0.926 44 H 0.067 0.933 45 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.438 -1.921 12.262 33.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.295 3.705 3 O -0.422 6.422 4 N -0.380 5.380 5 C 0.036 3.964 6 C -0.162 4.162 7 C -0.134 4.134 8 C -0.128 4.128 9 C 0.300 3.700 10 O -0.420 6.420 11 N -0.374 5.374 12 C -0.017 4.017 13 C 0.021 3.979 14 N -0.399 5.399 15 C -0.379 4.379 16 H 0.109 0.891 17 C -0.190 4.190 18 N -0.579 5.579 19 Si 0.715 3.285 20 H -0.209 1.209 21 H -0.216 1.216 22 H -0.202 1.202 23 C -0.147 4.147 24 C -0.164 4.164 25 H 0.111 0.889 26 H 0.111 0.889 27 H 0.098 0.902 28 H 0.234 0.766 29 H 0.108 0.892 30 H 0.088 0.912 31 H 0.091 0.909 32 H 0.095 0.905 33 H 0.093 0.907 34 H 0.116 0.884 35 H 0.235 0.765 36 H 0.086 0.914 37 H 0.086 0.914 38 H 0.051 0.949 39 H 0.050 0.950 40 H 0.196 0.804 41 H 0.071 0.929 42 H 0.091 0.909 43 H 0.093 0.907 44 H 0.086 0.914 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -30.493 -1.190 12.767 33.079 hybrid contribution 0.370 -0.527 0.532 0.835 sum -30.123 -1.717 13.299 32.973 Atomic orbital electron populations 1.21894 0.91755 1.04902 1.04758 1.20848 0.90614 0.83602 0.75386 1.90752 1.70781 1.31400 1.49227 1.46195 1.07360 1.08699 1.75749 1.21071 0.79082 0.99312 0.96967 1.21825 0.96425 0.96574 1.01426 1.21275 0.93253 1.04037 0.94812 1.21388 0.91789 1.00298 0.99372 1.20578 0.89774 0.76020 0.83637 1.90705 1.70409 1.49357 1.31481 1.45933 1.07789 1.74562 1.09090 1.21596 0.78610 1.02352 0.99168 1.20730 0.85834 0.99203 0.92159 1.42535 1.00314 1.90772 1.06269 1.19008 0.89561 1.43382 0.85914 0.89093 1.24677 0.96131 1.01631 0.96514 1.69698 1.07131 1.56858 1.24189 0.86538 0.79782 0.77952 0.84232 1.20920 1.21574 1.20191 1.21512 0.95198 0.96445 1.01582 1.21902 0.95186 1.02829 0.96491 0.88894 0.88881 0.90206 0.76613 0.89237 0.91205 0.90935 0.90485 0.90729 0.88372 0.76521 0.91404 0.91415 0.94945 0.94961 0.80392 0.92935 0.90891 0.90731 0.91439 0.90984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.63 10.30 36.00 0.37 -0.26 16 2 C 0.51 3.91 7.90 -10.99 -0.09 3.82 16 3 O -0.54 -6.94 16.76 5.55 0.09 -6.85 16 4 N -0.73 -4.01 5.08 -53.81 -0.27 -4.28 16 5 C 0.14 0.98 2.45 -67.93 -0.17 0.81 16 6 C -0.12 -0.71 5.39 -26.73 -0.14 -0.85 16 7 C -0.10 -0.79 4.49 -26.74 -0.12 -0.91 16 8 C -0.11 -0.92 2.52 -91.77 -0.23 -1.15 16 9 C 0.51 6.63 7.16 -10.98 -0.08 6.55 16 10 O -0.54 -9.25 15.98 5.56 0.09 -9.17 16 11 N -0.72 -9.06 5.45 -60.29 -0.33 -9.39 16 12 C 0.11 1.71 5.79 -4.04 -0.02 1.69 16 13 C 0.15 2.76 6.37 -4.04 -0.03 2.73 16 14 N -0.75 -17.94 5.41 -59.91 -0.32 -18.26 16 15 C -0.25 -7.06 10.47 -15.06 -0.16 -7.21 16 16 H 0.09 2.73 8.06 -52.49 -0.42 2.30 16 17 C 0.01 0.20 5.50 -17.43 -0.10 0.10 16 18 N -0.93 -29.23 13.97 55.49 0.78 -28.45 16 19 Si 0.89 22.29 27.74 -169.99 -4.71 17.58 16 20 H -0.28 -7.06 7.11 56.52 0.40 -6.65 16 21 H -0.29 -7.36 7.11 56.52 0.40 -6.95 16 22 H -0.28 -6.60 6.52 56.52 0.37 -6.23 16 23 C -0.11 -0.86 5.10 -26.70 -0.14 -1.00 16 24 C -0.13 -0.89 5.50 -26.70 -0.15 -1.04 16 25 H 0.09 0.24 8.14 -51.93 -0.42 -0.19 16 26 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.08 0.10 8.14 -51.93 -0.42 -0.32 16 28 H 0.40 0.98 8.60 -40.82 -0.35 0.63 16 29 H 0.09 0.86 7.58 -51.93 -0.39 0.47 16 30 H 0.07 0.30 8.14 -51.92 -0.42 -0.12 16 31 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.08 0.69 8.10 -51.93 -0.42 0.27 16 33 H 0.07 0.74 8.10 -51.93 -0.42 0.32 16 34 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.40 3.91 7.90 -40.82 -0.32 3.59 16 36 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 37 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 38 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.36 8.54 5.53 -40.82 -0.23 8.31 16 41 H 0.26 7.77 8.31 -40.82 -0.34 7.43 16 42 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 43 H 0.07 0.54 7.57 -51.93 -0.39 0.14 16 44 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 45 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 365.66 15.07 5.51 5.51 Total: -1.00 -36.81 365.66 -7.83 -44.64 By element: Atomic # 1 Polarization: 13.01 SS G_CDS: -7.61 Total: 5.40 kcal Atomic # 6 Polarization: 4.31 SS G_CDS: -1.04 Total: 3.27 kcal Atomic # 7 Polarization: -60.23 SS G_CDS: -0.15 Total: -60.38 kcal Atomic # 8 Polarization: -16.20 SS G_CDS: 0.18 Total: -16.02 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -4.71 Total: 17.58 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -36.81 -7.83 -44.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001153632089.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.026 kcal (2) G-P(sol) polarization free energy of solvation -36.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds