Wall clock time and date at job start Tue Mar 31 2020 03:53:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.21287 * 119.99862 * 2 1 4 4 N 1.34773 * 120.00282 * 179.97438 * 2 1 3 5 5 C 1.46496 * 120.00380 * 179.97438 * 4 2 1 6 6 C 1.52999 * 109.47399 * 154.99923 * 5 4 2 7 7 C 1.52996 * 109.47175 * 180.02562 * 6 5 4 8 8 C 1.52992 * 109.47231 * 299.99937 * 7 6 5 9 9 C 1.50706 * 109.47274 * 180.02562 * 8 7 6 10 10 O 1.21281 * 119.99699 * 0.02562 * 9 8 7 11 11 N 1.34773 * 120.00080 * 180.02562 * 9 8 7 12 12 C 1.46506 * 119.99969 * 180.02562 * 11 9 8 13 13 C 1.52998 * 109.47237 * 179.72043 * 12 11 9 14 14 N 1.46496 * 109.47238 * 179.97438 * 13 12 11 15 15 C 1.36936 * 120.00309 * 180.02562 * 14 13 12 16 16 H 1.07997 * 119.99552 * 0.02562 * 15 14 13 17 17 C 1.38815 * 120.00076 * 180.02562 * 15 14 13 18 18 N 1.31617 * 119.99912 * 179.97438 * 17 15 14 19 19 Si 1.86795 * 120.00122 * 0.02562 * 17 15 14 20 20 H 1.48494 * 109.47731 * 89.99568 * 19 17 15 21 21 H 1.48496 * 109.47015 * 209.99975 * 19 17 15 22 22 H 1.48504 * 109.46998 * 329.99267 * 19 17 15 23 23 C 1.53004 * 109.47051 * 60.00474 * 8 7 6 24 24 C 1.53002 * 109.47047 * 275.00358 * 5 4 2 25 25 H 1.09005 * 109.46905 * 270.00330 * 1 2 3 26 26 H 1.08997 * 109.47701 * 29.99932 * 1 2 3 27 27 H 1.09002 * 109.47332 * 150.00242 * 1 2 3 28 28 H 0.96998 * 119.99726 * 0.02562 * 4 2 1 29 29 H 1.09001 * 109.46807 * 34.99895 * 5 4 2 30 30 H 1.09010 * 109.46564 * 60.00068 * 6 5 4 31 31 H 1.09004 * 109.46974 * 300.00622 * 6 5 4 32 32 H 1.09004 * 109.46699 * 180.02562 * 7 6 5 33 33 H 1.08993 * 109.47124 * 60.00287 * 7 6 5 34 34 H 1.08998 * 109.47794 * 300.00366 * 8 7 6 35 35 H 0.97005 * 120.00161 * 359.72088 * 11 9 8 36 36 H 1.09001 * 109.46512 * 299.72412 * 12 11 9 37 37 H 1.08998 * 109.47174 * 59.71534 * 12 11 9 38 38 H 1.09000 * 109.46986 * 299.99958 * 13 12 11 39 39 H 1.09002 * 109.46857 * 60.00093 * 13 12 11 40 40 H 0.97005 * 119.99809 * 0.02562 * 14 13 12 41 41 H 0.97000 * 120.00284 * 179.97438 * 18 17 15 42 42 H 1.08993 * 109.47257 * 59.99678 * 23 8 7 43 43 H 1.09001 * 109.47281 * 179.97438 * 23 8 7 44 44 H 1.09001 * 109.46939 * 299.99457 * 24 5 4 45 45 H 1.08991 * 109.47217 * 59.99932 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1671 0.0005 5 6 3.6458 -1.1672 0.0000 6 6 4.1561 -2.4741 0.6103 7 6 5.6861 -2.4738 0.6102 8 6 6.1960 -2.3487 -0.8268 9 6 7.7031 -2.3491 -0.8269 10 8 8.3095 -2.4408 0.2194 11 7 8.3769 -2.2474 -1.9896 12 6 9.8420 -2.2483 -1.9897 13 6 10.3520 -2.1295 -3.4273 14 7 11.8169 -2.1298 -3.4274 15 6 12.5016 -2.0317 -4.6092 16 1 11.9616 -1.9537 -5.5412 17 6 13.8898 -2.0325 -4.6093 18 7 14.5478 -1.9387 -5.7452 19 14 14.8238 -2.1682 -2.9973 20 1 15.0704 -3.5992 -2.6869 21 1 16.1217 -1.4565 -3.1159 22 1 14.0217 -1.5564 -1.9075 23 6 5.6859 -1.0417 -1.4371 24 6 4.1553 -1.0423 -1.4374 25 1 -0.3633 0.0001 1.0277 26 1 -0.3634 0.8899 -0.5138 27 1 -0.3634 -0.8900 -0.5138 28 1 1.6959 -2.0072 0.0005 29 1 4.0094 -0.3249 0.5887 30 1 3.7925 -3.3163 0.0214 31 1 3.7931 -2.5630 1.6342 32 1 6.0495 -3.4051 1.0446 33 1 6.0492 -1.6316 1.1992 34 1 5.8329 -3.1908 -1.4159 35 1 7.8919 -2.1781 -2.8269 36 1 10.2058 -1.4040 -1.4041 37 1 10.2048 -3.1779 -1.5511 38 1 9.9881 -2.9738 -4.0128 39 1 9.9891 -1.1999 -3.8659 40 1 12.3019 -2.1995 -2.5902 41 1 15.5178 -1.9389 -5.7453 42 1 6.0490 -0.1996 -0.8481 43 1 6.0495 -0.9524 -2.4607 44 1 3.7917 -1.8846 -2.0261 45 1 3.7918 -0.1113 -1.8721 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001153632089.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:53:40 Heat of formation + Delta-G solvation = -114.768233 kcal Electronic energy + Delta-G solvation = -23614.650984 eV Core-core repulsion = 20051.043521 eV Total energy + Delta-G solvation = -3563.607464 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.42768 -40.60172 -38.64121 -37.43027 -35.55761 -35.19693 -33.48453 -31.89412 -31.73128 -30.11781 -29.04522 -25.59464 -24.09153 -23.73013 -23.08438 -21.60807 -21.49687 -20.65795 -19.84108 -18.14971 -17.84203 -17.41859 -17.08279 -16.73204 -16.38710 -16.21520 -15.67831 -15.61448 -15.27147 -15.07274 -14.79687 -14.69803 -14.49824 -13.98068 -13.62659 -13.44245 -13.37184 -13.19778 -13.18745 -12.94471 -12.72575 -12.62720 -12.51682 -12.27218 -12.12498 -12.09524 -11.84345 -11.50461 -11.30649 -11.04776 -10.97059 -10.72541 -10.14005 -10.02689 -9.37555 -8.06372 -5.41654 1.38051 1.39621 1.46879 1.61657 1.68620 2.10130 2.31828 2.45488 3.25267 3.56611 3.63702 3.67972 3.80959 3.95976 4.01434 4.06530 4.17197 4.19194 4.32146 4.37433 4.43471 4.50175 4.54457 4.55508 4.69668 4.70607 4.86075 5.00138 5.00406 5.08569 5.09210 5.12986 5.17825 5.19556 5.31131 5.36188 5.42680 5.58089 5.71323 6.16602 6.54209 6.64945 7.01975 7.23768 7.34355 7.76690 7.94149 9.14303 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.035173 B = 0.002242 C = 0.002169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 795.882264 B =12485.204080 C =12908.784324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.500 3.500 3 O -0.606 6.606 4 N -0.712 5.712 5 C 0.139 3.861 6 C -0.110 4.110 7 C -0.096 4.096 8 C -0.094 4.094 9 C 0.511 3.489 10 O -0.587 6.587 11 N -0.712 5.712 12 C 0.121 3.879 13 C 0.150 3.850 14 N -0.759 5.759 15 C -0.238 4.238 16 H 0.064 0.936 17 C -0.060 4.060 18 N -0.979 5.979 19 Si 0.953 3.047 20 H -0.276 1.276 21 H -0.294 1.294 22 H -0.256 1.256 23 C -0.106 4.106 24 C -0.117 4.117 25 H 0.107 0.893 26 H 0.086 0.914 27 H 0.111 0.889 28 H 0.419 0.581 29 H 0.055 0.945 30 H 0.099 0.901 31 H 0.080 0.920 32 H 0.072 0.928 33 H 0.048 0.952 34 H 0.132 0.868 35 H 0.417 0.583 36 H 0.055 0.945 37 H 0.061 0.939 38 H 0.044 0.956 39 H 0.039 0.961 40 H 0.366 0.634 41 H 0.259 0.741 42 H 0.049 0.951 43 H 0.086 0.914 44 H 0.094 0.906 45 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -34.024 -3.596 13.119 36.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.289 3.711 3 O -0.487 6.487 4 N -0.364 5.364 5 C 0.034 3.966 6 C -0.148 4.148 7 C -0.134 4.134 8 C -0.115 4.115 9 C 0.299 3.701 10 O -0.467 6.467 11 N -0.365 5.365 12 C -0.004 4.004 13 C 0.024 3.976 14 N -0.406 5.406 15 C -0.369 4.369 16 H 0.082 0.918 17 C -0.252 4.252 18 N -0.629 5.629 19 Si 0.780 3.220 20 H -0.202 1.202 21 H -0.220 1.220 22 H -0.181 1.181 23 C -0.144 4.144 24 C -0.156 4.156 25 H 0.125 0.875 26 H 0.105 0.895 27 H 0.130 0.870 28 H 0.257 0.743 29 H 0.073 0.927 30 H 0.118 0.882 31 H 0.098 0.902 32 H 0.091 0.909 33 H 0.067 0.933 34 H 0.150 0.850 35 H 0.254 0.746 36 H 0.073 0.927 37 H 0.079 0.921 38 H 0.062 0.938 39 H 0.057 0.943 40 H 0.199 0.801 41 H 0.068 0.932 42 H 0.068 0.932 43 H 0.104 0.896 44 H 0.112 0.888 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -33.172 -2.910 13.626 35.979 hybrid contribution 1.086 0.001 0.222 1.109 sum -32.085 -2.909 13.848 35.067 Atomic orbital electron populations 1.21900 0.88362 1.06156 1.06039 1.21636 0.92294 0.83061 0.74075 1.90730 1.72238 1.33597 1.52156 1.46057 1.06751 1.09206 1.74428 1.20954 0.80065 0.98914 0.96634 1.21722 0.94150 0.96538 1.02407 1.21257 0.95219 1.02697 0.94241 1.21404 0.88257 1.01703 1.00173 1.21369 0.91487 0.74533 0.82695 1.90689 1.71649 1.51319 1.33052 1.45799 1.06339 1.74241 1.10116 1.21208 0.80712 1.01483 0.96952 1.20839 0.83006 0.99757 0.94039 1.42565 1.02466 1.90673 1.04853 1.19013 0.89801 1.41501 0.86563 0.91798 1.25490 0.97296 1.02370 1.00079 1.69865 1.07296 1.59016 1.26717 0.85447 0.78092 0.78160 0.80334 1.20234 1.22015 1.18067 1.21482 0.95968 0.95252 1.01703 1.21824 0.94232 1.02901 0.96634 0.87457 0.89525 0.87049 0.74308 0.92698 0.88236 0.90185 0.90906 0.93315 0.85001 0.74618 0.92659 0.92093 0.93850 0.94287 0.80094 0.93181 0.93241 0.89562 0.88776 0.92949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.82 10.30 71.23 0.73 -0.09 16 2 C 0.50 7.18 7.90 87.66 0.69 7.87 16 3 O -0.61 -15.97 16.76 -3.05 -0.05 -16.02 16 4 N -0.71 -6.28 5.08 -442.54 -2.25 -8.53 16 5 C 0.14 1.77 2.45 44.99 0.11 1.88 16 6 C -0.11 -0.96 5.39 30.59 0.16 -0.80 16 7 C -0.10 -1.46 4.49 30.59 0.14 -1.33 16 8 C -0.09 -1.41 2.52 -11.54 -0.03 -1.44 16 9 C 0.51 12.52 7.16 87.66 0.63 13.14 16 10 O -0.59 -19.89 15.98 -3.03 -0.05 -19.94 16 11 N -0.71 -16.56 5.45 -463.05 -2.52 -19.08 16 12 C 0.12 3.73 5.79 86.38 0.50 4.23 16 13 C 0.15 5.35 6.37 86.38 0.55 5.90 16 14 N -0.76 -35.38 5.41 -343.46 -1.86 -37.23 16 15 C -0.24 -13.51 10.47 84.03 0.88 -12.63 16 16 H 0.06 3.90 8.06 -2.91 -0.02 3.88 16 17 C -0.06 -3.56 5.50 84.86 0.47 -3.10 16 18 N -0.98 -62.53 13.97 21.65 0.30 -62.23 16 19 Si 0.95 45.94 27.74 68.60 1.90 47.84 16 20 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 21 H -0.29 -14.28 7.11 99.48 0.71 -13.57 16 22 H -0.26 -11.36 6.52 99.48 0.65 -10.71 16 23 C -0.11 -1.53 5.10 30.61 0.16 -1.37 16 24 C -0.12 -1.45 5.50 30.61 0.17 -1.28 16 25 H 0.11 0.27 8.14 -2.38 -0.02 0.25 16 26 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16 27 H 0.11 -0.15 8.14 -2.39 -0.02 -0.17 16 28 H 0.42 0.46 8.60 -92.71 -0.80 -0.34 16 29 H 0.05 1.10 7.58 -2.39 -0.02 1.09 16 30 H 0.10 0.36 8.14 -2.38 -0.02 0.34 16 31 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 32 H 0.07 1.20 8.10 -2.39 -0.02 1.18 16 33 H 0.05 0.99 8.10 -2.39 -0.02 0.97 16 34 H 0.13 1.18 8.14 -2.39 -0.02 1.16 16 35 H 0.42 7.01 7.90 -92.70 -0.73 6.28 16 36 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 37 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 38 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 39 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 40 H 0.37 16.59 5.53 -92.70 -0.51 16.08 16 41 H 0.26 15.77 8.31 -92.71 -0.77 15.00 16 42 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 43 H 0.09 1.05 7.57 -2.39 -0.02 1.03 16 44 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 45 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 Total: -1.00 -83.25 365.66 -0.46 -83.71 By element: Atomic # 1 Polarization: 21.59 SS G_CDS: -1.10 Total: 20.48 kcal Atomic # 6 Polarization: 5.83 SS G_CDS: 5.16 Total: 10.99 kcal Atomic # 7 Polarization: -120.75 SS G_CDS: -6.32 Total: -127.07 kcal Atomic # 8 Polarization: -35.86 SS G_CDS: -0.10 Total: -35.96 kcal Atomic # 14 Polarization: 45.94 SS G_CDS: 1.90 Total: 47.84 kcal Total: -83.25 -0.46 -83.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001153632089.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.056 kcal (2) G-P(sol) polarization free energy of solvation -83.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds