Wall clock time and date at job start Tue Mar 31 2020 03:46:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46500 * 109.47205 * 2 1 4 4 C 1.36941 * 119.99846 * 84.81752 * 3 2 1 5 5 H 1.07995 * 120.00052 * 38.41008 * 4 3 2 6 6 C 1.38813 * 119.99638 * 218.41320 * 4 3 2 7 7 N 1.31620 * 120.00249 * 12.33327 * 6 4 3 8 8 Si 1.86802 * 119.99695 * 192.33502 * 6 4 3 9 9 H 1.48497 * 109.47184 * 89.99666 * 8 6 4 10 10 H 1.48495 * 109.47241 * 209.99831 * 8 6 4 11 11 H 1.48507 * 109.47238 * 329.99933 * 8 6 4 12 12 C 1.46506 * 120.00172 * 264.81816 * 3 2 1 13 13 H 1.09006 * 109.46795 * 182.20974 * 12 3 2 14 14 C 1.52995 * 109.46852 * 62.21000 * 12 3 2 15 15 C 1.52996 * 109.47149 * 302.21033 * 12 3 2 16 16 N 1.46507 * 109.47052 * 305.00075 * 15 12 3 17 17 C 1.34770 * 120.00154 * 180.02562 * 16 15 12 18 18 O 1.21283 * 119.99914 * 359.97438 * 17 16 15 19 19 C 1.50701 * 120.00024 * 179.97438 * 17 16 15 20 20 H 1.08999 * 109.40270 * 59.82757 * 19 17 16 21 21 C 1.53071 * 109.39875 * 179.56888 * 19 17 16 22 22 C 1.53352 * 108.42406 * 169.02432 * 21 19 17 23 23 C 1.52925 * 108.66450 * 292.45835 * 22 21 19 24 24 N 1.45753 * 110.48635 * 50.76099 * 23 22 21 25 25 C 1.33350 * 124.10516 * 340.93384 * 24 23 22 26 26 O 1.21290 * 118.23937 * 182.22079 * 25 24 23 27 27 H 1.08998 * 109.47074 * 300.00026 * 1 2 3 28 28 H 1.09002 * 109.47019 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47022 * 59.99934 * 1 2 3 30 30 H 1.09001 * 109.47444 * 120.00072 * 2 1 3 31 31 H 1.09000 * 109.47201 * 240.00510 * 2 1 3 32 32 H 0.97007 * 119.99542 * 180.02562 * 7 6 4 33 33 H 1.09004 * 109.47688 * 60.00170 * 14 12 3 34 34 H 1.09003 * 109.47016 * 180.02562 * 14 12 3 35 35 H 1.09000 * 109.47322 * 300.00032 * 14 12 3 36 36 H 1.08995 * 109.47119 * 64.99507 * 15 12 3 37 37 H 1.09000 * 109.47306 * 185.00373 * 15 12 3 38 38 H 0.97002 * 120.00013 * 359.97438 * 16 15 12 39 39 H 1.09002 * 109.67465 * 288.75724 * 21 19 17 40 40 H 1.09004 * 109.67502 * 49.29322 * 21 19 17 41 41 H 1.09006 * 109.60105 * 172.71106 * 22 21 19 42 42 H 1.08999 * 109.62053 * 52.21810 * 22 21 19 43 43 H 1.09001 * 109.30009 * 290.45316 * 23 22 21 44 44 H 1.09001 * 109.13454 * 170.97099 * 23 22 21 45 45 H 0.96998 * 117.94278 * 160.90022 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1456 2.0624 1.1811 5 1 2.4986 1.5508 2.0642 6 6 1.8208 3.4106 1.2432 7 7 1.1676 3.9766 0.2505 8 14 2.3107 4.4216 2.7356 9 1 3.6558 5.0106 2.5147 10 1 1.3217 5.5098 2.9427 11 1 2.3440 3.5479 3.9361 12 6 2.3706 2.0337 -1.2636 13 1 2.7479 3.0363 -1.0619 14 6 1.1295 2.1252 -2.1535 15 6 3.4499 1.2163 -1.9761 16 7 4.5919 1.0273 -1.0780 17 6 5.6691 0.3327 -1.4945 18 8 5.6929 -0.1364 -2.6127 19 6 6.8440 0.1388 -0.5709 20 1 6.5170 -0.3887 0.3252 21 6 7.9185 -0.6878 -1.2817 22 6 9.2010 -0.6400 -0.4422 23 6 9.7517 0.7863 -0.4706 24 7 8.7076 1.7432 -0.1265 25 6 7.4019 1.4787 -0.1854 26 8 6.6233 2.3680 0.0865 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 -0.8899 30 1 1.8934 -0.5138 0.8900 31 1 1.8933 -0.5137 -0.8900 32 1 0.9410 4.9188 0.2938 33 1 0.3604 2.7075 -1.6460 34 1 1.3916 2.6102 -3.0938 35 1 0.7522 1.1226 -2.3551 36 1 3.0438 0.2445 -2.2567 37 1 3.7755 1.7463 -2.8712 38 1 4.5730 1.4028 -0.1838 39 1 7.5823 -1.7200 -1.3798 40 1 8.1106 -0.2684 -2.2693 41 1 9.9381 -1.3251 -0.8613 42 1 8.9764 -0.9249 0.5857 43 1 10.1279 1.0074 -1.4695 44 1 10.5672 0.8688 0.2479 45 1 8.9796 2.6278 0.1641 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001153910148.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:46:07 Heat of formation + Delta-G solvation = -85.535401 kcal Electronic energy + Delta-G solvation = -25849.249125 eV Core-core repulsion = 22286.909292 eV Total energy + Delta-G solvation = -3562.339833 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.90658 -40.04747 -38.59098 -37.50335 -35.26139 -34.09375 -33.68319 -32.42223 -30.86538 -30.10646 -27.37376 -25.90168 -25.23336 -23.75761 -23.26263 -21.66507 -21.04122 -20.02675 -18.92340 -18.39349 -17.98513 -17.47508 -16.98359 -16.56173 -16.32792 -15.99546 -15.57539 -15.29085 -15.19060 -14.77509 -14.67874 -14.35645 -14.26668 -13.94270 -13.63115 -13.25211 -13.10747 -12.95594 -12.93053 -12.81726 -12.68188 -12.39117 -12.23938 -12.16317 -12.08817 -11.91867 -11.81096 -11.27719 -11.23112 -10.98460 -10.78063 -10.46715 -10.06793 -9.88262 -8.45475 -7.81094 -5.36750 1.32462 1.45566 1.50560 1.54325 1.64169 2.30397 2.45114 2.53880 3.35585 3.52119 3.54819 3.66737 3.81882 3.88768 4.17495 4.26264 4.28930 4.46404 4.53184 4.54617 4.71622 4.77537 4.84792 4.86894 4.88405 4.93140 5.03197 5.07288 5.08431 5.10152 5.17470 5.34963 5.36614 5.55649 5.60306 5.74437 5.77045 5.81494 5.92819 6.22589 6.53848 6.70240 7.13129 7.25283 7.29079 7.92599 8.46216 9.22309 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.015427 B = 0.005327 C = 0.004419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1814.587256 B = 5254.761930 C = 6335.038906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.143 3.857 3 N -0.588 5.588 4 C -0.260 4.260 5 H 0.056 0.944 6 C -0.026 4.026 7 N -0.911 5.911 8 Si 0.950 3.050 9 H -0.295 1.295 10 H -0.296 1.296 11 H -0.270 1.270 12 C 0.189 3.811 13 H 0.053 0.947 14 C -0.133 4.133 15 C 0.112 3.888 16 N -0.691 5.691 17 C 0.515 3.485 18 O -0.582 6.582 19 C -0.121 4.121 20 H 0.143 0.857 21 C -0.099 4.099 22 C -0.130 4.130 23 C 0.100 3.900 24 N -0.707 5.707 25 C 0.519 3.481 26 O -0.585 6.585 27 H 0.027 0.973 28 H 0.059 0.941 29 H 0.041 0.959 30 H 0.038 0.962 31 H 0.048 0.952 32 H 0.247 0.753 33 H 0.055 0.945 34 H 0.042 0.958 35 H 0.045 0.955 36 H 0.059 0.941 37 H 0.048 0.952 38 H 0.413 0.587 39 H 0.088 0.912 40 H 0.065 0.935 41 H 0.119 0.881 42 H 0.082 0.918 43 H 0.078 0.922 44 H 0.111 0.889 45 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.211 -10.130 -1.352 20.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.017 3.983 3 N -0.310 5.310 4 C -0.391 4.391 5 H 0.073 0.927 6 C -0.224 4.224 7 N -0.555 5.555 8 Si 0.779 3.221 9 H -0.223 1.223 10 H -0.222 1.222 11 H -0.195 1.195 12 C 0.081 3.919 13 H 0.072 0.928 14 C -0.193 4.193 15 C -0.014 4.014 16 N -0.341 5.341 17 C 0.300 3.700 18 O -0.464 6.464 19 C -0.145 4.145 20 H 0.161 0.839 21 C -0.137 4.137 22 C -0.168 4.168 23 C -0.023 4.023 24 N -0.358 5.358 25 C 0.305 3.695 26 O -0.465 6.465 27 H 0.047 0.953 28 H 0.078 0.922 29 H 0.060 0.940 30 H 0.057 0.943 31 H 0.067 0.933 32 H 0.056 0.944 33 H 0.074 0.926 34 H 0.061 0.939 35 H 0.064 0.936 36 H 0.077 0.923 37 H 0.067 0.933 38 H 0.250 0.750 39 H 0.107 0.893 40 H 0.084 0.916 41 H 0.137 0.863 42 H 0.101 0.899 43 H 0.096 0.904 44 H 0.129 0.871 45 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges 16.697 -10.067 -2.064 19.606 hybrid contribution -0.273 1.647 1.191 2.050 sum 16.424 -8.420 -0.873 18.477 Atomic orbital electron populations 1.22236 0.98907 0.99760 1.00475 1.20878 0.92539 0.86225 0.98627 1.43921 1.74415 1.10604 1.02065 1.19162 1.37427 0.92652 0.89867 0.92671 1.25803 0.97658 0.99863 0.99089 1.70081 1.41133 1.11031 1.33265 0.85557 0.76712 0.78742 0.81057 1.22277 1.22248 1.19534 1.20220 0.91416 0.94717 0.85503 0.92848 1.21984 0.99387 1.00026 0.97866 1.21885 0.87141 1.00068 0.92339 1.46088 1.16124 1.52691 1.19150 1.20425 0.84021 0.78030 0.87488 1.90625 1.82217 1.51932 1.21617 1.21491 0.95517 0.95857 1.01632 0.83936 1.21523 0.93172 1.00227 0.98770 1.21967 0.96800 0.96523 1.01469 1.21791 0.89434 0.88275 1.02751 1.45415 1.04915 1.18270 1.67207 1.19855 0.83422 0.89391 0.76870 1.90864 1.57242 1.47302 1.51078 0.95344 0.92192 0.93973 0.94339 0.93327 0.94408 0.92632 0.93917 0.93588 0.92260 0.93343 0.74973 0.89333 0.91582 0.86287 0.89915 0.90418 0.87132 0.75780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.06 10.01 71.98 0.72 -5.33 16 2 C 0.14 5.87 5.71 86.38 0.49 6.36 16 3 N -0.59 -28.05 1.80 -678.03 -1.22 -29.27 16 4 C -0.26 -13.88 9.35 84.03 0.79 -13.09 16 5 H 0.06 2.95 7.86 -2.91 -0.02 2.93 16 6 C -0.03 -1.44 4.94 84.86 0.42 -1.02 16 7 N -0.91 -52.12 10.32 21.65 0.22 -51.89 16 8 Si 0.95 45.75 29.57 68.60 2.03 47.78 16 9 H -0.30 -14.62 7.11 99.48 0.71 -13.91 16 10 H -0.30 -14.30 7.11 99.48 0.71 -13.59 16 11 H -0.27 -12.48 7.11 99.48 0.71 -11.78 16 12 C 0.19 8.82 1.91 44.99 0.09 8.90 16 13 H 0.05 2.94 6.40 -2.38 -0.02 2.93 16 14 C -0.13 -5.83 8.19 71.98 0.59 -5.24 16 15 C 0.11 4.67 4.89 86.38 0.42 5.09 16 16 N -0.69 -28.18 4.87 -463.06 -2.26 -30.43 16 17 C 0.51 18.80 7.06 87.66 0.62 19.42 16 18 O -0.58 -23.55 15.79 -3.04 -0.05 -23.60 16 19 C -0.12 -3.23 2.78 -12.43 -0.03 -3.27 16 20 H 0.14 3.31 8.14 -2.39 -0.02 3.29 16 21 C -0.10 -1.87 4.78 30.74 0.15 -1.72 16 22 C -0.13 -1.30 6.02 30.69 0.18 -1.12 16 23 C 0.10 1.02 7.17 86.49 0.62 1.64 16 24 N -0.71 -13.71 5.45 -467.31 -2.55 -16.25 16 25 C 0.52 15.09 7.28 87.71 0.64 15.73 16 26 O -0.58 -23.37 15.56 -3.06 -0.05 -23.42 16 27 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 28 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 29 H 0.04 1.70 5.99 -2.39 -0.01 1.69 16 30 H 0.04 1.55 8.08 -2.39 -0.02 1.53 16 31 H 0.05 1.86 6.42 -2.39 -0.02 1.85 16 32 H 0.25 13.95 8.31 -92.70 -0.77 13.18 16 33 H 0.05 2.77 6.96 -2.39 -0.02 2.75 16 34 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 35 H 0.05 1.82 6.50 -2.39 -0.02 1.81 16 36 H 0.06 2.40 6.79 -2.39 -0.02 2.38 16 37 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 38 H 0.41 18.31 6.67 -92.71 -0.62 17.69 16 39 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 40 H 0.07 1.47 7.72 -2.38 -0.02 1.45 16 41 H 0.12 0.55 8.14 -2.38 -0.02 0.53 16 42 H 0.08 0.75 8.12 -2.39 -0.02 0.73 16 43 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 44 H 0.11 0.49 8.14 -2.39 -0.02 0.47 16 45 H 0.41 7.30 8.80 -92.71 -0.82 6.49 16 Total: -1.00 -70.68 352.67 1.39 -69.28 By element: Atomic # 1 Polarization: 31.89 SS G_CDS: -0.43 Total: 31.46 kcal Atomic # 6 Polarization: 20.67 SS G_CDS: 5.69 Total: 26.36 kcal Atomic # 7 Polarization: -122.06 SS G_CDS: -5.80 Total: -127.85 kcal Atomic # 8 Polarization: -46.93 SS G_CDS: -0.10 Total: -47.02 kcal Atomic # 14 Polarization: 45.75 SS G_CDS: 2.03 Total: 47.78 kcal Total: -70.68 1.39 -69.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001153910148.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.251 kcal (2) G-P(sol) polarization free energy of solvation -70.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds