Wall clock time and date at job start Tue Mar 31 2020 03:46:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46502 * 109.47024 * 2 1 4 4 C 1.36943 * 119.99915 * 87.89630 * 3 2 1 5 5 H 1.08000 * 119.99536 * 220.11000 * 4 3 2 6 6 C 1.38807 * 120.00228 * 40.10124 * 4 3 2 7 7 N 1.31612 * 120.00484 * 213.61253 * 6 4 3 8 8 Si 1.86809 * 119.99785 * 33.61429 * 6 4 3 9 9 H 1.48499 * 109.47102 * 94.77432 * 8 6 4 10 10 H 1.48497 * 109.47057 * 214.77464 * 8 6 4 11 11 H 1.48498 * 109.47017 * 334.77491 * 8 6 4 12 12 C 1.46501 * 120.00405 * 267.88791 * 3 2 1 13 13 H 1.08994 * 109.47160 * 180.02562 * 12 3 2 14 14 C 1.53000 * 109.46636 * 60.00141 * 12 3 2 15 15 C 1.52997 * 109.46883 * 300.00719 * 12 3 2 16 16 N 1.46498 * 109.47015 * 304.99395 * 15 12 3 17 17 C 1.34783 * 119.99845 * 180.02562 * 16 15 12 18 18 O 1.21279 * 119.99909 * 359.97438 * 17 16 15 19 19 C 1.50702 * 119.99770 * 180.02562 * 17 16 15 20 20 H 1.08999 * 110.43679 * 61.08301 * 19 17 16 21 21 C 1.54633 * 110.48309 * 183.76766 * 19 17 16 22 22 C 1.54481 * 101.76213 * 143.47356 * 21 19 17 23 23 N 1.46766 * 105.47613 * 334.58175 * 22 21 19 24 24 C 1.46497 * 124.35095 * 196.99322 * 23 22 21 25 25 C 1.34416 * 111.29725 * 17.01782 * 23 22 21 26 26 O 1.21286 * 124.93868 * 179.55834 * 25 23 22 27 27 H 1.08987 * 109.47421 * 178.56344 * 1 2 3 28 28 H 1.09000 * 109.46941 * 298.56539 * 1 2 3 29 29 H 1.09003 * 109.47121 * 58.56006 * 1 2 3 30 30 H 1.08996 * 109.47115 * 240.00182 * 2 1 3 31 31 H 1.08998 * 109.46919 * 120.00218 * 2 1 3 32 32 H 0.97003 * 120.00415 * 180.02562 * 7 6 4 33 33 H 1.09002 * 109.47030 * 60.00582 * 14 12 3 34 34 H 1.09002 * 109.47113 * 180.02562 * 14 12 3 35 35 H 1.09000 * 109.47250 * 300.00153 * 14 12 3 36 36 H 1.09001 * 109.47706 * 64.99515 * 15 12 3 37 37 H 1.09000 * 109.46986 * 184.99851 * 15 12 3 38 38 H 0.96997 * 120.00311 * 0.02562 * 16 15 12 39 39 H 1.08993 * 110.96843 * 261.59002 * 21 19 17 40 40 H 1.09001 * 110.96739 * 25.35376 * 21 19 17 41 41 H 1.09001 * 110.24647 * 215.58455 * 22 21 19 42 42 H 1.08995 * 110.32092 * 93.62419 * 22 21 19 43 43 H 1.09002 * 109.47100 * 180.02562 * 24 23 22 44 44 H 1.08990 * 109.47248 * 300.05336 * 24 23 22 45 45 H 1.09003 * 109.47031 * 60.05535 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2055 2.0413 1.1852 5 1 1.9304 3.0820 1.2729 6 6 2.7486 1.3728 2.2737 7 7 2.3624 1.6794 3.4940 8 14 4.0277 0.0378 2.0067 9 1 5.3870 0.6225 2.1319 10 1 3.8514 -1.0277 3.0259 11 1 3.8616 -0.5426 0.6499 12 6 2.3066 2.0564 -1.2678 13 1 2.6573 3.0690 -1.0687 14 6 1.0342 2.1142 -2.1155 15 6 3.3882 1.2818 -2.0236 16 7 4.5649 1.1233 -1.1655 17 6 5.6502 0.4687 -1.6243 18 8 5.6523 0.0106 -2.7472 19 6 6.8605 0.3051 -0.7414 20 1 6.6041 -0.2594 0.1551 21 6 8.0041 -0.3917 -1.5146 22 6 9.2490 0.3323 -0.9556 23 7 8.7697 1.6443 -0.5053 24 6 9.6374 2.7936 -0.2361 25 6 7.4323 1.6559 -0.3712 26 8 6.7790 2.6102 -0.0059 27 1 -0.3633 -1.0272 -0.0258 28 1 -0.3633 0.4914 0.9026 29 1 -0.3633 0.5360 -0.8768 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 2.7422 1.2125 4.2547 33 1 0.2637 2.6659 -1.5771 34 1 1.2487 2.6161 -3.0591 35 1 0.6839 1.1014 -2.3146 36 1 3.0054 0.2995 -2.3004 37 1 3.6660 1.8304 -2.9236 38 1 4.5631 1.4893 -0.2673 39 1 8.0369 -1.4569 -1.2861 40 1 7.9061 -0.2273 -2.5877 41 1 9.9983 0.4527 -1.7380 42 1 9.6662 -0.2250 -0.1170 43 1 9.0301 3.6403 0.0839 44 1 10.3468 2.5368 0.5505 45 1 10.1808 3.0589 -1.1430 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001154719662.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:46:18 Heat of formation + Delta-G solvation = -40.072072 kcal Electronic energy + Delta-G solvation = -26166.135118 eV Core-core repulsion = 22605.766723 eV Total energy + Delta-G solvation = -3560.368395 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.85482 -38.81746 -37.15777 -36.39441 -33.87335 -32.91477 -32.10804 -30.90776 -28.83788 -28.26927 -26.89238 -25.55955 -23.65460 -22.32412 -22.07944 -20.51675 -19.63680 -19.06736 -17.28315 -16.92144 -16.82658 -16.19862 -15.56338 -15.49523 -15.07346 -14.75682 -14.18379 -13.91013 -13.72334 -13.39924 -13.10655 -12.96191 -12.70452 -12.67892 -12.55366 -12.31184 -12.16409 -11.99706 -11.93130 -11.75930 -11.50801 -11.45962 -11.20913 -10.76810 -10.64343 -10.30013 -9.93355 -9.88634 -9.80542 -9.57719 -9.44285 -8.84671 -8.50049 -8.38745 -6.79467 -6.11867 -3.41425 2.44361 2.74961 3.06262 3.29132 3.40844 3.43007 3.67034 4.19216 4.33784 4.49735 4.79072 4.84670 4.92017 5.13281 5.16004 5.20398 5.25134 5.38092 5.39098 5.53296 5.59035 5.70249 5.83981 5.95208 6.03319 6.05063 6.10339 6.22882 6.29469 6.36564 6.41185 6.45844 6.63619 6.74511 6.82950 6.92350 6.98477 7.01766 7.21974 8.00954 8.02613 8.11207 8.40499 8.59896 9.00447 9.69326 10.15463 11.04162 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.016595 B = 0.006073 C = 0.005276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1686.843247 B = 4609.481711 C = 5305.862828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.146 3.854 3 N -0.594 5.594 4 C -0.280 4.280 5 H 0.075 0.925 6 C 0.056 3.944 7 N -0.875 5.875 8 Si 0.822 3.178 9 H -0.285 1.285 10 H -0.295 1.295 11 H -0.251 1.251 12 C 0.153 3.847 13 H 0.078 0.922 14 C -0.156 4.156 15 C 0.102 3.898 16 N -0.692 5.692 17 C 0.527 3.473 18 O -0.553 6.553 19 C -0.157 4.157 20 H 0.129 0.871 21 C -0.114 4.114 22 C 0.103 3.897 23 N -0.625 5.625 24 C 0.095 3.905 25 C 0.525 3.475 26 O -0.503 6.503 27 H 0.033 0.967 28 H 0.058 0.942 29 H 0.049 0.951 30 H 0.035 0.965 31 H 0.046 0.954 32 H 0.263 0.737 33 H 0.060 0.940 34 H 0.045 0.955 35 H 0.053 0.947 36 H 0.061 0.939 37 H 0.059 0.941 38 H 0.417 0.583 39 H 0.095 0.905 40 H 0.102 0.898 41 H 0.082 0.918 42 H 0.073 0.927 43 H 0.084 0.916 44 H 0.061 0.939 45 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.030 -3.342 -9.402 15.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.021 3.979 3 N -0.316 5.316 4 C -0.408 4.408 5 H 0.093 0.907 6 C -0.147 4.147 7 N -0.513 5.513 8 Si 0.649 3.351 9 H -0.212 1.212 10 H -0.222 1.222 11 H -0.175 1.175 12 C 0.045 3.955 13 H 0.096 0.904 14 C -0.215 4.215 15 C -0.024 4.024 16 N -0.343 5.343 17 C 0.310 3.690 18 O -0.433 6.433 19 C -0.181 4.181 20 H 0.147 0.853 21 C -0.152 4.152 22 C -0.020 4.020 23 N -0.361 5.361 24 C -0.047 4.047 25 C 0.311 3.689 26 O -0.376 6.376 27 H 0.052 0.948 28 H 0.078 0.922 29 H 0.068 0.932 30 H 0.053 0.947 31 H 0.064 0.936 32 H 0.073 0.927 33 H 0.079 0.921 34 H 0.064 0.936 35 H 0.072 0.928 36 H 0.079 0.921 37 H 0.077 0.923 38 H 0.256 0.744 39 H 0.114 0.886 40 H 0.120 0.880 41 H 0.100 0.900 42 H 0.091 0.909 43 H 0.103 0.897 44 H 0.080 0.920 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 11.689 -3.053 -9.750 15.525 hybrid contribution 0.900 -0.763 0.708 1.376 sum 12.589 -3.816 -9.042 15.962 Atomic orbital electron populations 1.22400 0.99217 0.99069 1.02094 1.20994 0.92115 0.86348 0.98487 1.44153 1.74625 1.11572 1.01293 1.18648 1.37971 0.97531 0.86614 0.90724 1.25504 0.97621 0.96699 0.94893 1.70047 1.40036 1.42655 0.98593 0.87692 0.85368 0.83137 0.78929 1.21234 1.22224 1.17504 1.20855 0.91434 0.96400 0.86810 0.90389 1.22237 0.99016 1.01437 0.98821 1.22024 0.86197 1.00996 0.93137 1.46051 1.13914 1.54746 1.19603 1.19584 0.83735 0.78736 0.86915 1.90630 1.82676 1.50350 1.19634 1.22249 0.96309 0.97660 1.01909 0.85308 1.22569 0.90527 1.00153 1.01940 1.22149 0.97370 0.83022 0.99501 1.48049 1.06985 1.12963 1.68141 1.21565 0.94167 0.88173 1.00760 1.20341 0.82485 0.88992 0.77114 1.90816 1.63142 1.38059 1.45587 0.94805 0.92241 0.93224 0.94667 0.93588 0.92720 0.92070 0.93574 0.92805 0.92091 0.92314 0.74371 0.88630 0.87997 0.89959 0.90864 0.89675 0.92032 0.92048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.24 9.99 37.16 0.37 -2.86 16 2 C 0.15 3.12 4.29 -4.04 -0.02 3.11 16 3 N -0.59 -13.42 1.39 -165.66 -0.23 -13.65 16 4 C -0.28 -7.53 9.39 -15.06 -0.14 -7.67 16 5 H 0.08 2.19 8.06 -52.49 -0.42 1.77 16 6 C 0.06 1.56 5.05 -17.44 -0.09 1.47 16 7 N -0.87 -26.10 13.97 55.49 0.78 -25.32 16 8 Si 0.82 20.41 23.26 -169.99 -3.95 16.46 16 9 H -0.28 -7.15 7.11 56.52 0.40 -6.75 16 10 H -0.30 -7.53 7.11 56.52 0.40 -7.13 16 11 H -0.25 -5.86 5.47 56.52 0.31 -5.55 16 12 C 0.15 2.97 2.87 -67.93 -0.20 2.77 16 13 H 0.08 1.59 7.89 -51.93 -0.41 1.18 16 14 C -0.16 -2.54 8.14 37.16 0.30 -2.23 16 15 C 0.10 1.93 4.92 -4.04 -0.02 1.91 16 16 N -0.69 -14.26 4.20 -60.29 -0.25 -14.51 16 17 C 0.53 10.17 7.16 -10.98 -0.08 10.10 16 18 O -0.55 -11.23 15.52 5.56 0.09 -11.14 16 19 C -0.16 -2.56 3.33 -91.78 -0.31 -2.87 16 20 H 0.13 2.11 7.59 -51.93 -0.39 1.72 16 21 C -0.11 -1.32 6.45 -25.10 -0.16 -1.48 16 22 C 0.10 0.97 7.35 -3.12 -0.02 0.94 16 23 N -0.63 -8.10 3.33 -180.29 -0.60 -8.70 16 24 C 0.09 0.96 11.14 59.85 0.67 1.63 16 25 C 0.53 9.12 7.44 -10.86 -0.08 9.04 16 26 O -0.50 -10.70 16.17 5.55 0.09 -10.61 16 27 H 0.03 0.57 8.14 -51.94 -0.42 0.14 16 28 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 29 H 0.05 0.87 5.65 -51.93 -0.29 0.58 16 30 H 0.03 0.70 6.53 -51.93 -0.34 0.37 16 31 H 0.05 1.08 4.63 -51.93 -0.24 0.84 16 32 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 33 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.05 0.85 6.36 -51.93 -0.33 0.52 16 36 H 0.06 1.16 6.87 -51.93 -0.36 0.80 16 37 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 38 H 0.42 9.46 4.58 -40.82 -0.19 9.28 16 39 H 0.10 0.89 8.14 -51.93 -0.42 0.46 16 40 H 0.10 1.27 7.06 -51.93 -0.37 0.90 16 41 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 42 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.08 1.00 7.53 -51.93 -0.39 0.61 16 44 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 45 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 LS Contribution 347.54 15.07 5.24 5.24 Total: -1.00 -32.98 347.54 -5.81 -38.79 By element: Atomic # 1 Polarization: 16.79 SS G_CDS: -7.19 Total: 9.61 kcal Atomic # 6 Polarization: 13.62 SS G_CDS: 0.23 Total: 13.85 kcal Atomic # 7 Polarization: -61.88 SS G_CDS: -0.31 Total: -62.19 kcal Atomic # 8 Polarization: -21.93 SS G_CDS: 0.18 Total: -21.75 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -3.95 Total: 16.46 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -32.98 -5.81 -38.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001154719662.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.283 kcal (2) G-P(sol) polarization free energy of solvation -32.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.789 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds