Wall clock time and date at job start Tue Mar 31 2020 03:46:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46502 * 109.47024 * 2 1 4 4 C 1.36943 * 119.99915 * 87.89630 * 3 2 1 5 5 H 1.08000 * 119.99536 * 220.11000 * 4 3 2 6 6 C 1.38807 * 120.00228 * 40.10124 * 4 3 2 7 7 N 1.31612 * 120.00484 * 213.61253 * 6 4 3 8 8 Si 1.86809 * 119.99785 * 33.61429 * 6 4 3 9 9 H 1.48499 * 109.47102 * 94.77432 * 8 6 4 10 10 H 1.48497 * 109.47057 * 214.77464 * 8 6 4 11 11 H 1.48498 * 109.47017 * 334.77491 * 8 6 4 12 12 C 1.46501 * 120.00405 * 267.88791 * 3 2 1 13 13 H 1.08994 * 109.47160 * 180.02562 * 12 3 2 14 14 C 1.53000 * 109.46636 * 60.00141 * 12 3 2 15 15 C 1.52997 * 109.46883 * 300.00719 * 12 3 2 16 16 N 1.46498 * 109.47015 * 304.99395 * 15 12 3 17 17 C 1.34783 * 119.99845 * 180.02562 * 16 15 12 18 18 O 1.21279 * 119.99909 * 359.97438 * 17 16 15 19 19 C 1.50702 * 119.99770 * 180.02562 * 17 16 15 20 20 H 1.08999 * 110.43679 * 61.08301 * 19 17 16 21 21 C 1.54633 * 110.48309 * 183.76766 * 19 17 16 22 22 C 1.54481 * 101.76213 * 143.47356 * 21 19 17 23 23 N 1.46766 * 105.47613 * 334.58175 * 22 21 19 24 24 C 1.46497 * 124.35095 * 196.99322 * 23 22 21 25 25 C 1.34416 * 111.29725 * 17.01782 * 23 22 21 26 26 O 1.21286 * 124.93868 * 179.55834 * 25 23 22 27 27 H 1.08987 * 109.47421 * 178.56344 * 1 2 3 28 28 H 1.09000 * 109.46941 * 298.56539 * 1 2 3 29 29 H 1.09003 * 109.47121 * 58.56006 * 1 2 3 30 30 H 1.08996 * 109.47115 * 240.00182 * 2 1 3 31 31 H 1.08998 * 109.46919 * 120.00218 * 2 1 3 32 32 H 0.97003 * 120.00415 * 180.02562 * 7 6 4 33 33 H 1.09002 * 109.47030 * 60.00582 * 14 12 3 34 34 H 1.09002 * 109.47113 * 180.02562 * 14 12 3 35 35 H 1.09000 * 109.47250 * 300.00153 * 14 12 3 36 36 H 1.09001 * 109.47706 * 64.99515 * 15 12 3 37 37 H 1.09000 * 109.46986 * 184.99851 * 15 12 3 38 38 H 0.96997 * 120.00311 * 0.02562 * 16 15 12 39 39 H 1.08993 * 110.96843 * 261.59002 * 21 19 17 40 40 H 1.09001 * 110.96739 * 25.35376 * 21 19 17 41 41 H 1.09001 * 110.24647 * 215.58455 * 22 21 19 42 42 H 1.08995 * 110.32092 * 93.62419 * 22 21 19 43 43 H 1.09002 * 109.47100 * 180.02562 * 24 23 22 44 44 H 1.08990 * 109.47248 * 300.05336 * 24 23 22 45 45 H 1.09003 * 109.47031 * 60.05535 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2055 2.0413 1.1852 5 1 1.9304 3.0820 1.2729 6 6 2.7486 1.3728 2.2737 7 7 2.3624 1.6794 3.4940 8 14 4.0277 0.0378 2.0067 9 1 5.3870 0.6225 2.1319 10 1 3.8514 -1.0277 3.0259 11 1 3.8616 -0.5426 0.6499 12 6 2.3066 2.0564 -1.2678 13 1 2.6573 3.0690 -1.0687 14 6 1.0342 2.1142 -2.1155 15 6 3.3882 1.2818 -2.0236 16 7 4.5649 1.1233 -1.1655 17 6 5.6502 0.4687 -1.6243 18 8 5.6523 0.0106 -2.7472 19 6 6.8605 0.3051 -0.7414 20 1 6.6041 -0.2594 0.1551 21 6 8.0041 -0.3917 -1.5146 22 6 9.2490 0.3323 -0.9556 23 7 8.7697 1.6443 -0.5053 24 6 9.6374 2.7936 -0.2361 25 6 7.4323 1.6559 -0.3712 26 8 6.7790 2.6102 -0.0059 27 1 -0.3633 -1.0272 -0.0258 28 1 -0.3633 0.4914 0.9026 29 1 -0.3633 0.5360 -0.8768 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 2.7422 1.2125 4.2547 33 1 0.2637 2.6659 -1.5771 34 1 1.2487 2.6161 -3.0591 35 1 0.6839 1.1014 -2.3146 36 1 3.0054 0.2995 -2.3004 37 1 3.6660 1.8304 -2.9236 38 1 4.5631 1.4893 -0.2673 39 1 8.0369 -1.4569 -1.2861 40 1 7.9061 -0.2273 -2.5877 41 1 9.9983 0.4527 -1.7380 42 1 9.6662 -0.2250 -0.1170 43 1 9.0301 3.6403 0.0839 44 1 10.3468 2.5368 0.5505 45 1 10.1808 3.0589 -1.1430 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001154719662.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:46:17 Heat of formation + Delta-G solvation = -63.808272 kcal Electronic energy + Delta-G solvation = -26167.164397 eV Core-core repulsion = 22605.766723 eV Total energy + Delta-G solvation = -3561.397674 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.07833 -40.25235 -38.81650 -37.61903 -35.53334 -34.18125 -33.86086 -32.51021 -30.63689 -29.35487 -27.85572 -26.90844 -25.59098 -23.84780 -23.31113 -21.79334 -21.17624 -20.47427 -18.83262 -18.53505 -18.04378 -17.45276 -17.35757 -16.99873 -16.53935 -16.15706 -15.69055 -15.17419 -15.03779 -14.86292 -14.62597 -14.55622 -14.24378 -13.96164 -13.82349 -13.59989 -13.50333 -13.34579 -13.31085 -13.13379 -13.03887 -12.75317 -12.64797 -12.37147 -12.11805 -12.07036 -11.78786 -11.47143 -11.29654 -11.19226 -10.98087 -10.58685 -10.00053 -9.81664 -8.71410 -8.29603 -5.54539 1.13372 1.26815 1.32808 1.41713 1.46811 1.95689 2.28767 2.39890 2.93741 3.11779 3.27170 3.37936 3.71027 3.89271 3.95763 4.05260 4.28564 4.30889 4.34444 4.38455 4.54157 4.60261 4.63720 4.68780 4.74630 4.79435 4.82140 4.82651 4.90484 4.98568 5.07872 5.08693 5.22610 5.29223 5.37806 5.44547 5.52720 5.61744 5.86499 5.92052 6.22133 6.45038 6.91059 7.00924 7.06046 7.65238 8.11028 8.91007 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.016595 B = 0.006073 C = 0.005276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1686.843247 B = 4609.481711 C = 5305.862828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.142 3.858 3 N -0.599 5.599 4 C -0.262 4.262 5 H 0.036 0.964 6 C 0.003 3.997 7 N -0.925 5.925 8 Si 0.891 3.109 9 H -0.292 1.292 10 H -0.303 1.303 11 H -0.230 1.230 12 C 0.151 3.849 13 H 0.059 0.941 14 C -0.145 4.145 15 C 0.106 3.894 16 N -0.707 5.707 17 C 0.522 3.478 18 O -0.564 6.564 19 C -0.164 4.164 20 H 0.126 0.874 21 C -0.106 4.106 22 C 0.102 3.898 23 N -0.618 5.618 24 C 0.088 3.912 25 C 0.509 3.491 26 O -0.560 6.560 27 H 0.061 0.939 28 H 0.027 0.973 29 H 0.067 0.933 30 H 0.057 0.943 31 H 0.023 0.977 32 H 0.261 0.739 33 H 0.051 0.949 34 H 0.074 0.926 35 H 0.064 0.936 36 H 0.066 0.934 37 H 0.073 0.927 38 H 0.406 0.594 39 H 0.123 0.877 40 H 0.093 0.907 41 H 0.117 0.883 42 H 0.101 0.899 43 H 0.059 0.941 44 H 0.088 0.912 45 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.022 -5.376 -11.830 19.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.017 3.983 3 N -0.323 5.323 4 C -0.392 4.392 5 H 0.054 0.946 6 C -0.196 4.196 7 N -0.566 5.566 8 Si 0.718 3.282 9 H -0.220 1.220 10 H -0.231 1.231 11 H -0.153 1.153 12 C 0.044 3.956 13 H 0.077 0.923 14 C -0.204 4.204 15 C -0.019 4.019 16 N -0.357 5.357 17 C 0.307 3.693 18 O -0.445 6.445 19 C -0.188 4.188 20 H 0.144 0.856 21 C -0.143 4.143 22 C -0.019 4.019 23 N -0.352 5.352 24 C -0.053 4.053 25 C 0.295 3.705 26 O -0.438 6.438 27 H 0.080 0.920 28 H 0.047 0.953 29 H 0.086 0.914 30 H 0.075 0.925 31 H 0.041 0.959 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.093 0.907 35 H 0.083 0.917 36 H 0.084 0.916 37 H 0.091 0.909 38 H 0.242 0.758 39 H 0.141 0.859 40 H 0.112 0.888 41 H 0.135 0.865 42 H 0.119 0.881 43 H 0.078 0.922 44 H 0.106 0.894 45 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 13.736 -5.126 -12.253 19.107 hybrid contribution 0.292 -0.052 1.386 1.418 sum 14.028 -5.178 -10.866 18.485 Atomic orbital electron populations 1.22280 0.97408 1.00782 1.01342 1.21061 0.93607 0.85265 0.98345 1.44175 1.75037 1.12032 1.01032 1.18459 1.36326 0.96151 0.88248 0.94619 1.25999 0.99322 0.99688 0.94599 1.70146 1.41828 1.45206 0.99457 0.86645 0.82089 0.80153 0.79322 1.21989 1.23099 1.15343 1.20954 0.93422 0.95226 0.85990 0.92252 1.22111 0.96702 1.02383 0.99219 1.22010 0.85557 1.01136 0.93182 1.46265 1.14956 1.55226 1.19241 1.20081 0.84122 0.77928 0.87167 1.90609 1.83009 1.50746 1.20154 1.22369 0.96588 0.97918 1.01966 0.85631 1.22670 0.89237 1.01621 1.00809 1.22487 0.96901 0.81037 1.01511 1.48283 1.05794 1.14938 1.66168 1.21798 0.93733 0.86669 1.03053 1.20658 0.84008 0.88709 0.77103 1.90778 1.64699 1.39832 1.48523 0.92022 0.95328 0.91435 0.92502 0.95854 0.92959 0.93014 0.90668 0.91682 0.91554 0.90923 0.75754 0.85875 0.88818 0.86485 0.88132 0.92223 0.89378 0.89201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.86 9.99 71.98 0.72 -5.14 16 2 C 0.14 5.90 4.29 86.38 0.37 6.27 16 3 N -0.60 -27.20 1.39 -678.04 -0.94 -28.14 16 4 C -0.26 -14.67 9.39 84.03 0.79 -13.88 16 5 H 0.04 2.25 8.06 -2.91 -0.02 2.22 16 6 C 0.00 0.16 5.05 84.86 0.43 0.59 16 7 N -0.92 -57.66 13.97 21.65 0.30 -57.36 16 8 Si 0.89 44.16 23.26 68.60 1.60 45.75 16 9 H -0.29 -14.67 7.11 99.48 0.71 -13.96 16 10 H -0.30 -15.28 7.11 99.48 0.71 -14.57 16 11 H -0.23 -10.43 5.47 99.48 0.54 -9.89 16 12 C 0.15 5.78 2.87 44.99 0.13 5.91 16 13 H 0.06 2.48 7.89 -2.39 -0.02 2.46 16 14 C -0.15 -4.42 8.14 71.98 0.59 -3.83 16 15 C 0.11 3.87 4.92 86.38 0.43 4.29 16 16 N -0.71 -28.76 4.20 -463.06 -1.95 -30.71 16 17 C 0.52 19.55 7.16 87.66 0.63 20.17 16 18 O -0.56 -21.87 15.52 -3.02 -0.05 -21.92 16 19 C -0.16 -5.11 3.33 -11.54 -0.04 -5.15 16 20 H 0.13 3.94 7.59 -2.39 -0.02 3.92 16 21 C -0.11 -2.08 6.45 31.65 0.20 -1.88 16 22 C 0.10 1.48 7.35 86.83 0.64 2.11 16 23 N -0.62 -14.54 3.33 -842.91 -2.81 -17.35 16 24 C 0.09 1.58 11.14 127.77 1.42 3.01 16 25 C 0.51 17.40 7.44 87.90 0.65 18.05 16 26 O -0.56 -24.60 16.17 -3.05 -0.05 -24.65 16 27 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 28 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 29 H 0.07 2.22 5.65 -2.39 -0.01 2.21 16 30 H 0.06 2.12 6.53 -2.39 -0.02 2.11 16 31 H 0.02 1.07 4.63 -2.39 -0.01 1.06 16 32 H 0.26 15.54 8.31 -92.71 -0.77 14.77 16 33 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 34 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 35 H 0.06 1.84 6.36 -2.39 -0.02 1.83 16 36 H 0.07 2.35 6.87 -2.39 -0.02 2.33 16 37 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 38 H 0.41 18.61 4.58 -92.71 -0.42 18.18 16 39 H 0.12 1.75 8.14 -2.39 -0.02 1.73 16 40 H 0.09 2.04 7.06 -2.39 -0.02 2.03 16 41 H 0.12 0.98 8.14 -2.39 -0.02 0.96 16 42 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 43 H 0.06 1.40 7.53 -2.39 -0.02 1.38 16 44 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 45 H 0.09 1.12 8.14 -2.39 -0.02 1.11 16 Total: -1.00 -76.30 347.54 3.46 -72.84 By element: Atomic # 1 Polarization: 30.59 SS G_CDS: 0.40 Total: 30.99 kcal Atomic # 6 Polarization: 23.58 SS G_CDS: 6.96 Total: 30.54 kcal Atomic # 7 Polarization: -128.16 SS G_CDS: -5.39 Total: -133.55 kcal Atomic # 8 Polarization: -46.48 SS G_CDS: -0.10 Total: -46.57 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 1.60 Total: 45.75 kcal Total: -76.30 3.46 -72.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001154719662.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.032 kcal (2) G-P(sol) polarization free energy of solvation -76.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.840 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds