Wall clock time and date at job start Tue Mar 31 2020 03:46:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46501 * 109.47009 * 2 1 4 4 C 1.36943 * 119.99611 * 274.03968 * 3 2 1 5 5 H 1.07997 * 119.99303 * 174.71135 * 4 3 2 6 6 C 1.38810 * 120.00330 * 354.70537 * 4 3 2 7 7 N 1.31623 * 120.00037 * 31.38751 * 6 4 3 8 8 Si 1.86799 * 120.00214 * 211.38980 * 6 4 3 9 9 H 1.48505 * 109.47264 * 84.99403 * 8 6 4 10 10 H 1.48497 * 109.47255 * 204.99433 * 8 6 4 11 11 H 1.48508 * 109.46858 * 324.99602 * 8 6 4 12 12 C 1.46489 * 120.00217 * 94.03169 * 3 2 1 13 13 H 1.09003 * 109.47690 * 179.97438 * 12 3 2 14 14 C 1.53007 * 109.47121 * 60.00366 * 12 3 2 15 15 C 1.53003 * 109.47500 * 300.00495 * 12 3 2 16 16 N 1.46501 * 109.46724 * 304.99716 * 15 12 3 17 17 C 1.34780 * 119.99816 * 179.97438 * 16 15 12 18 18 O 1.21285 * 119.99864 * 0.02562 * 17 16 15 19 19 C 1.50697 * 119.99939 * 179.97438 * 17 16 15 20 20 H 1.09001 * 110.28515 * 320.52512 * 19 17 16 21 21 C 1.54482 * 110.24461 * 82.50059 * 19 17 16 22 22 C 1.54630 * 101.76187 * 93.58242 * 21 19 17 23 23 C 1.51286 * 104.25957 * 24.58518 * 22 21 19 24 24 O 1.21275 * 124.94808 * 164.01756 * 23 22 21 25 25 N 1.34424 * 110.11077 * 344.13905 * 23 22 21 26 26 C 1.46498 * 124.34874 * 179.43936 * 25 23 22 27 27 H 1.09002 * 109.47389 * 60.00817 * 1 2 3 28 28 H 1.09007 * 109.46727 * 180.02562 * 1 2 3 29 29 H 1.08991 * 109.47112 * 299.99750 * 1 2 3 30 30 H 1.09003 * 109.47305 * 239.99822 * 2 1 3 31 31 H 1.08997 * 109.47162 * 119.99874 * 2 1 3 32 32 H 0.96993 * 119.99841 * 180.02562 * 7 6 4 33 33 H 1.09002 * 109.46553 * 299.99772 * 14 12 3 34 34 H 1.08999 * 109.47152 * 59.99692 * 14 12 3 35 35 H 1.08994 * 109.47176 * 179.97438 * 14 12 3 36 36 H 1.08997 * 109.47319 * 185.00018 * 15 12 3 37 37 H 1.08999 * 109.47149 * 64.99835 * 15 12 3 38 38 H 0.96996 * 120.00409 * 359.97438 * 16 15 12 39 39 H 1.08998 * 110.97194 * 211.70404 * 21 19 17 40 40 H 1.09001 * 110.96841 * 335.46542 * 21 19 17 41 41 H 1.09002 * 110.48076 * 143.47949 * 22 21 19 42 42 H 1.08994 * 110.48961 * 265.98479 * 22 21 19 43 43 H 1.08995 * 109.46852 * 269.70223 * 26 25 23 44 44 H 1.08997 * 109.46778 * 149.70036 * 26 25 23 45 45 H 1.08994 * 109.47064 * 29.70289 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1677 2.0546 -1.1831 5 1 2.4453 3.0982 -1.1789 6 6 1.9625 1.3957 -2.3875 7 7 1.0860 0.4165 -2.4609 8 14 2.9304 1.8985 -3.9040 9 1 4.2411 1.2003 -3.9087 10 1 2.1679 1.5281 -5.1232 11 1 3.1517 3.3669 -3.8855 12 6 2.3466 2.0421 1.2655 13 1 2.6910 3.0570 1.0668 14 6 3.4515 1.2595 1.9779 15 6 1.1017 2.0902 2.1538 16 7 0.0065 2.7349 1.4250 17 6 -1.1963 2.8882 2.0136 18 8 -1.3717 2.4929 3.1468 19 6 -2.3227 3.5519 1.2642 20 1 -1.9458 4.3934 0.6829 21 6 -3.0221 2.5326 0.3378 22 6 -4.1780 2.0326 1.2349 23 6 -4.4070 3.1640 2.2127 24 8 -5.3940 3.2948 2.9051 25 7 -3.3582 4.0048 2.2005 26 6 -3.2589 5.2144 3.0210 27 1 -0.3634 0.5137 -0.8901 28 1 -0.3633 -1.0278 0.0005 29 1 -0.3633 0.5138 0.8899 30 1 1.8934 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 0.9429 -0.0441 -3.3024 33 1 3.1075 0.2445 2.1767 34 1 4.3384 1.2252 1.3452 35 1 3.6961 1.7515 2.9193 36 1 1.3216 2.6592 3.0570 37 1 0.8099 1.0757 2.4255 38 1 0.1468 3.0513 0.5189 39 1 -3.4063 3.0196 -0.5585 40 1 -2.3487 1.7158 0.0778 41 1 -5.0729 1.8528 0.6389 42 1 -3.8852 1.1262 1.7647 43 1 -3.6748 6.0600 2.4733 44 1 -2.2122 5.4110 3.2531 45 1 -3.8158 5.0719 3.9471 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001154796080.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:46:12 Heat of formation + Delta-G solvation = -33.833128 kcal Electronic energy + Delta-G solvation = -26047.077533 eV Core-core repulsion = 22486.979679 eV Total energy + Delta-G solvation = -3560.097854 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.80550 -38.86943 -37.13198 -35.98756 -33.98211 -32.84717 -32.16835 -30.26910 -28.72149 -28.22848 -26.64580 -25.50285 -23.84449 -22.49363 -21.88127 -20.34419 -19.44571 -19.00286 -17.41245 -17.03656 -16.75143 -15.88056 -15.49766 -15.28611 -14.91227 -14.63411 -14.07878 -13.67428 -13.66216 -13.49996 -13.05488 -12.75405 -12.69952 -12.58140 -12.50112 -12.23287 -12.19833 -11.96006 -11.55358 -11.38066 -11.27705 -11.16437 -10.85166 -10.78998 -10.66024 -10.36293 -9.90878 -9.86058 -9.72742 -9.70873 -9.36896 -8.63932 -8.56309 -8.31408 -7.10512 -5.94617 -3.14684 2.61029 2.80912 2.95682 3.32209 3.41269 3.44482 3.66420 4.34988 4.38903 4.47833 4.80676 4.99090 5.12663 5.15203 5.25064 5.29866 5.31755 5.47372 5.52876 5.69346 5.71777 5.82445 5.91832 5.95360 6.00397 6.06104 6.23385 6.25820 6.41513 6.55905 6.64355 6.77788 6.90057 6.93039 7.04332 7.07159 7.14076 7.58324 7.73565 7.96667 8.02113 8.20120 8.21426 8.58004 9.11736 9.75719 10.21156 11.08905 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.017874 B = 0.004801 C = 0.004333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1566.176282 B = 5830.278701 C = 6459.812071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.164 3.836 3 N -0.594 5.594 4 C -0.264 4.264 5 H 0.075 0.925 6 C 0.012 3.988 7 N -0.879 5.879 8 Si 0.879 3.121 9 H -0.290 1.290 10 H -0.295 1.295 11 H -0.283 1.283 12 C 0.162 3.838 13 H 0.068 0.932 14 C -0.158 4.158 15 C 0.106 3.894 16 N -0.696 5.696 17 C 0.497 3.503 18 O -0.546 6.546 19 C 0.114 3.886 20 H 0.109 0.891 21 C -0.120 4.120 22 C -0.154 4.154 23 C 0.527 3.473 24 O -0.538 6.538 25 N -0.600 5.600 26 C 0.100 3.900 27 H 0.089 0.911 28 H 0.014 0.986 29 H 0.020 0.980 30 H 0.084 0.916 31 H 0.006 0.994 32 H 0.253 0.747 33 H 0.051 0.949 34 H 0.058 0.942 35 H 0.044 0.956 36 H 0.053 0.947 37 H 0.062 0.938 38 H 0.413 0.587 39 H 0.094 0.906 40 H 0.106 0.894 41 H 0.104 0.896 42 H 0.106 0.894 43 H 0.056 0.944 44 H 0.069 0.931 45 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.451 5.434 4.773 8.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.040 3.960 3 N -0.316 5.316 4 C -0.392 4.392 5 H 0.093 0.907 6 C -0.186 4.186 7 N -0.524 5.524 8 Si 0.708 3.292 9 H -0.217 1.217 10 H -0.222 1.222 11 H -0.209 1.209 12 C 0.053 3.947 13 H 0.086 0.914 14 C -0.218 4.218 15 C -0.020 4.020 16 N -0.347 5.347 17 C 0.280 3.720 18 O -0.424 6.424 19 C 0.006 3.994 20 H 0.127 0.873 21 C -0.158 4.158 22 C -0.194 4.194 23 C 0.315 3.685 24 O -0.415 6.415 25 N -0.334 5.334 26 C -0.042 4.042 27 H 0.107 0.893 28 H 0.033 0.967 29 H 0.039 0.961 30 H 0.102 0.898 31 H 0.024 0.976 32 H 0.063 0.937 33 H 0.070 0.930 34 H 0.078 0.922 35 H 0.063 0.937 36 H 0.071 0.929 37 H 0.080 0.920 38 H 0.249 0.751 39 H 0.113 0.887 40 H 0.124 0.876 41 H 0.122 0.878 42 H 0.124 0.876 43 H 0.075 0.925 44 H 0.088 0.912 45 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -4.135 5.208 5.842 8.852 hybrid contribution 0.786 0.312 -1.279 1.533 sum -3.349 5.520 4.563 7.906 Atomic orbital electron populations 1.22443 0.99257 0.98117 1.01202 1.20886 0.92510 0.84519 0.98098 1.44227 1.75714 1.11211 1.00435 1.19180 1.41909 0.94815 0.83257 0.90680 1.24671 0.98634 0.98181 0.97144 1.70257 1.30309 1.26553 1.25246 0.86666 0.81342 0.77963 0.83192 1.21732 1.22183 1.20854 1.20543 0.91133 0.96439 0.86604 0.91386 1.22188 0.99720 1.00630 0.99270 1.22023 0.88138 0.97275 0.94594 1.45883 1.10327 1.59354 1.19133 1.20757 0.83857 0.80238 0.87150 1.90685 1.82642 1.50430 1.18672 1.21617 0.88501 0.98955 0.90356 0.87338 1.22612 0.97260 0.98926 0.96972 1.22336 1.00757 0.98513 0.97803 1.20848 0.81828 0.83111 0.82692 1.90687 1.30340 1.75715 1.44804 1.47814 1.17907 1.25031 1.42613 1.21507 1.02515 0.85071 0.95062 0.89274 0.96709 0.96116 0.89820 0.97581 0.93677 0.92968 0.92249 0.93681 0.92909 0.91996 0.75053 0.88703 0.87596 0.87751 0.87581 0.92507 0.91212 0.90672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.08 9.27 37.16 0.34 -2.74 16 2 C 0.16 3.51 5.01 -4.04 -0.02 3.49 16 3 N -0.59 -12.16 1.92 -165.66 -0.32 -12.47 16 4 C -0.26 -6.01 9.38 -15.06 -0.14 -6.16 16 5 H 0.08 1.69 7.83 -52.49 -0.41 1.28 16 6 C 0.01 0.29 4.97 -17.43 -0.09 0.20 16 7 N -0.88 -21.66 8.40 55.49 0.47 -21.19 16 8 Si 0.88 19.46 29.65 -169.99 -5.04 14.42 16 9 H -0.29 -6.67 7.11 56.52 0.40 -6.26 16 10 H -0.30 -6.74 7.11 56.52 0.40 -6.34 16 11 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 12 C 0.16 2.76 2.87 -67.93 -0.19 2.57 16 13 H 0.07 1.14 7.78 -51.93 -0.40 0.74 16 14 C -0.16 -2.45 9.18 37.16 0.34 -2.11 16 15 C 0.11 1.74 4.32 -4.04 -0.02 1.72 16 16 N -0.70 -10.93 3.99 -60.29 -0.24 -11.18 16 17 C 0.50 7.86 6.74 -10.99 -0.07 7.79 16 18 O -0.55 -10.60 16.58 5.55 0.09 -10.50 16 19 C 0.11 1.46 3.49 -68.16 -0.24 1.23 16 20 H 0.11 1.14 8.14 -51.93 -0.42 0.71 16 21 C -0.12 -1.42 6.69 -25.10 -0.17 -1.59 16 22 C -0.15 -1.96 6.85 -26.74 -0.18 -2.14 16 23 C 0.53 8.25 8.02 -10.86 -0.09 8.16 16 24 O -0.54 -10.14 17.58 5.56 0.10 -10.04 16 25 N -0.60 -8.37 2.56 -174.03 -0.45 -8.82 16 26 C 0.10 1.18 10.96 59.85 0.66 1.84 16 27 H 0.09 2.00 6.30 -51.93 -0.33 1.67 16 28 H 0.01 0.28 8.14 -51.92 -0.42 -0.14 16 29 H 0.02 0.39 4.83 -51.93 -0.25 0.14 16 30 H 0.08 2.05 5.84 -51.93 -0.30 1.75 16 31 H 0.01 0.12 6.43 -51.93 -0.33 -0.21 16 32 H 0.25 6.24 8.31 -40.82 -0.34 5.90 16 33 H 0.05 0.83 6.66 -51.93 -0.35 0.48 16 34 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 35 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.06 1.13 6.92 -51.93 -0.36 0.77 16 38 H 0.41 6.60 7.89 -40.82 -0.32 6.27 16 39 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 40 H 0.11 1.41 7.89 -51.93 -0.41 1.00 16 41 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 42 H 0.11 1.41 8.14 -51.93 -0.42 0.99 16 43 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 44 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 45 H 0.07 0.95 7.92 -51.93 -0.41 0.54 16 LS Contribution 355.78 15.07 5.36 5.36 Total: -1.00 -28.75 355.78 -7.14 -35.89 By element: Atomic # 1 Polarization: 13.51 SS G_CDS: -7.24 Total: 6.27 kcal Atomic # 6 Polarization: 12.14 SS G_CDS: 0.13 Total: 12.27 kcal Atomic # 7 Polarization: -53.12 SS G_CDS: -0.54 Total: -53.66 kcal Atomic # 8 Polarization: -20.74 SS G_CDS: 0.19 Total: -20.55 kcal Atomic # 14 Polarization: 19.46 SS G_CDS: -5.04 Total: 14.42 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -28.75 -7.14 -35.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001154796080.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.055 kcal (2) G-P(sol) polarization free energy of solvation -28.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.889 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds