Wall clock time and date at job start Tue Mar 31 2020 03:47:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46503 * 109.46990 * 2 1 4 4 C 1.34780 * 119.99668 * 179.97438 * 3 2 1 5 5 O 1.21275 * 119.99953 * 359.97438 * 4 3 2 6 6 C 1.50703 * 119.99736 * 179.97438 * 4 3 2 7 7 C 1.50698 * 109.46859 * 179.97438 * 6 4 3 8 8 O 1.21278 * 120.00275 * 359.72886 * 7 6 4 9 9 N 1.34774 * 119.99432 * 179.97438 * 7 6 4 10 10 C 1.46500 * 119.99709 * 179.72525 * 9 7 6 11 11 C 1.53002 * 109.47205 * 180.02562 * 10 9 7 12 12 C 1.53007 * 109.47213 * 175.02174 * 11 10 9 13 13 C 1.52994 * 115.55143 * 278.03840 * 12 11 10 14 14 N 1.46500 * 109.46990 * 303.89478 * 13 12 11 15 15 C 1.36938 * 119.99934 * 175.59434 * 14 13 12 16 16 H 1.08001 * 120.00243 * 0.02562 * 15 14 13 17 17 C 1.38813 * 120.00102 * 180.02562 * 15 14 13 18 18 N 1.31619 * 119.99784 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00290 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.46880 * 59.99935 * 19 17 15 21 21 H 1.48494 * 109.47109 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.46692 * 300.00062 * 19 17 15 23 23 C 1.53001 * 117.49660 * 132.32119 * 12 11 10 24 24 C 1.53000 * 60.00148 * 252.51677 * 23 12 11 25 25 H 1.09005 * 109.47573 * 60.00100 * 1 2 3 26 26 H 1.08998 * 109.47325 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47517 * 300.00488 * 1 2 3 28 28 H 1.09002 * 109.47067 * 240.00111 * 2 1 3 29 29 H 1.09000 * 109.46887 * 119.99761 * 2 1 3 30 30 H 0.97000 * 119.99998 * 359.97438 * 3 2 1 31 31 H 1.09002 * 109.46918 * 60.00283 * 6 4 3 32 32 H 1.08998 * 109.46828 * 300.00124 * 6 4 3 33 33 H 0.96993 * 120.00881 * 359.73034 * 9 7 6 34 34 H 1.09008 * 109.47334 * 300.00473 * 10 9 7 35 35 H 1.09000 * 109.47607 * 60.00361 * 10 9 7 36 36 H 1.08994 * 109.47321 * 295.02070 * 11 10 9 37 37 H 1.09000 * 109.46939 * 55.03004 * 11 10 9 38 38 H 1.08996 * 109.47468 * 63.89589 * 13 12 11 39 39 H 1.09007 * 109.47285 * 183.89754 * 13 12 11 40 40 H 0.96999 * 120.00164 * 355.59535 * 14 13 12 41 41 H 0.97005 * 120.00089 * 179.97438 * 18 17 15 42 42 H 1.09004 * 117.50034 * 0.02562 * 23 12 11 43 43 H 1.08999 * 117.49281 * 145.02207 * 23 12 11 44 44 H 1.09000 * 117.49760 * 252.50949 * 24 23 12 45 45 H 1.08993 * 117.49485 * 107.49592 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 3.3434 1.6275 0.0005 5 8 4.1314 0.7057 0.0015 6 6 3.8457 3.0483 -0.0001 7 6 5.3527 3.0483 0.0013 8 8 5.9591 1.9980 0.0076 9 7 6.0265 4.2155 0.0006 10 6 7.4915 4.2155 0.0080 11 6 8.0015 5.6581 0.0061 12 6 9.5258 5.6603 0.1390 13 6 10.0642 5.5121 1.5634 14 7 9.5027 6.5677 2.4099 15 6 9.7716 6.5843 3.7525 16 1 10.3980 5.8194 4.1873 17 6 9.2391 7.5842 4.5548 18 7 8.4761 8.5166 4.0248 19 14 9.6065 7.6073 6.3861 20 1 11.0722 7.7218 6.5955 21 1 8.9242 8.7675 7.0133 22 1 9.1146 6.3504 7.0054 23 6 10.3179 6.5425 -0.8281 24 6 10.3343 5.0214 -0.9919 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.3879 2.1185 -0.0004 31 1 3.4820 3.5627 0.8895 32 1 3.4828 3.5616 -0.8905 33 1 5.5416 5.0555 -0.0048 34 1 7.8504 3.7048 0.9017 35 1 7.8594 3.6986 -0.8783 36 1 7.7176 6.1426 -0.9281 37 1 7.5630 6.1995 0.8443 38 1 9.7789 4.5379 1.9602 39 1 11.1510 5.5955 1.5516 40 1 8.9404 7.2549 2.0194 41 1 8.1037 9.2152 4.5855 42 1 9.7531 7.1216 -1.5587 43 1 11.2228 7.0177 -0.4495 44 1 11.2502 4.4959 -0.7212 45 1 9.7805 4.5996 -1.8306 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001164182437.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:47:31 Heat of formation + Delta-G solvation = -45.659823 kcal Electronic energy + Delta-G solvation = -23571.188621 eV Core-core repulsion = 20010.577923 eV Total energy + Delta-G solvation = -3560.610698 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.31483 -38.91445 -38.09354 -35.46762 -34.58106 -33.91452 -31.92720 -30.78372 -30.37909 -28.92896 -25.93529 -23.85271 -23.01963 -22.69411 -21.83373 -21.09391 -20.26797 -18.48236 -17.42985 -17.06317 -16.85178 -16.24611 -15.83594 -15.52467 -15.41870 -15.04049 -14.56757 -14.36391 -13.92480 -13.60892 -13.42894 -13.27746 -13.05709 -12.77942 -12.65364 -12.34377 -12.19917 -12.17293 -11.81153 -11.73838 -11.36555 -11.08987 -10.91337 -10.80937 -10.55251 -10.19768 -10.13107 -9.90806 -9.63835 -9.38749 -9.28886 -9.28066 -8.87317 -8.80613 -6.88538 -5.75061 -3.02443 2.51289 2.72393 2.81239 3.44635 3.45734 3.49654 3.50993 4.09362 4.38384 4.61759 4.62800 4.71959 4.81412 4.96051 4.99299 5.06010 5.09260 5.15228 5.20279 5.38212 5.45220 5.55103 5.57390 5.63598 5.67618 5.73937 5.82900 5.94570 6.19355 6.19559 6.22389 6.27427 6.46228 6.48476 6.55744 6.66368 6.80726 6.87004 7.24558 7.61493 7.72139 8.10221 8.40696 8.44494 9.55976 10.14262 10.50144 11.47882 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.013445 B = 0.002945 C = 0.002541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2081.981959 B = 9505.807442 C =11016.339584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.115 3.885 3 N -0.739 5.739 4 C 0.511 3.489 5 O -0.492 6.492 6 C -0.166 4.166 7 C 0.509 3.491 8 O -0.500 6.500 9 N -0.730 5.730 10 C 0.128 3.872 11 C -0.091 4.091 12 C -0.118 4.118 13 C 0.187 3.813 14 N -0.727 5.727 15 C -0.236 4.236 16 H 0.069 0.931 17 C -0.014 4.014 18 N -0.935 5.935 19 Si 0.906 3.094 20 H -0.286 1.286 21 H -0.291 1.291 22 H -0.286 1.286 23 C -0.167 4.167 24 C -0.178 4.178 25 H 0.061 0.939 26 H 0.073 0.927 27 H 0.062 0.938 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.398 0.602 31 H 0.123 0.877 32 H 0.120 0.880 33 H 0.399 0.601 34 H 0.071 0.929 35 H 0.062 0.938 36 H 0.061 0.939 37 H 0.089 0.911 38 H 0.026 0.974 39 H 0.018 0.982 40 H 0.384 0.616 41 H 0.254 0.746 42 H 0.088 0.912 43 H 0.094 0.906 44 H 0.092 0.908 45 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.146 -9.195 -13.271 22.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.009 4.009 3 N -0.395 5.395 4 C 0.295 3.705 5 O -0.363 6.363 6 C -0.209 4.209 7 C 0.293 3.707 8 O -0.372 6.372 9 N -0.383 5.383 10 C 0.005 3.995 11 C -0.129 4.129 12 C -0.119 4.119 13 C 0.060 3.940 14 N -0.372 5.372 15 C -0.368 4.368 16 H 0.087 0.913 17 C -0.210 4.210 18 N -0.584 5.584 19 Si 0.737 3.263 20 H -0.213 1.213 21 H -0.217 1.217 22 H -0.213 1.213 23 C -0.204 4.204 24 C -0.215 4.215 25 H 0.080 0.920 26 H 0.092 0.908 27 H 0.081 0.919 28 H 0.084 0.916 29 H 0.085 0.915 30 H 0.232 0.768 31 H 0.140 0.860 32 H 0.138 0.862 33 H 0.233 0.767 34 H 0.090 0.910 35 H 0.081 0.919 36 H 0.079 0.921 37 H 0.108 0.892 38 H 0.044 0.956 39 H 0.035 0.965 40 H 0.218 0.782 41 H 0.064 0.936 42 H 0.107 0.893 43 H 0.113 0.887 44 H 0.110 0.890 45 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -14.017 -10.740 -13.093 21.982 hybrid contribution -0.631 1.247 0.948 1.689 sum -14.647 -9.493 -12.145 21.264 Atomic orbital electron populations 1.22002 0.94480 1.03221 1.02483 1.21262 0.94058 0.83070 1.02476 1.46053 1.06961 1.08845 1.77607 1.20061 0.82231 0.90952 0.77282 1.90874 1.54393 1.45480 1.45561 1.21603 0.95743 0.96957 1.06643 1.19872 0.88798 0.84245 0.77833 1.90857 1.69339 1.30521 1.46508 1.46003 1.07957 1.08174 1.76156 1.21318 0.78218 0.97648 1.02364 1.21260 0.93577 0.95355 1.02705 1.21570 0.92563 1.04690 0.93095 1.20183 0.95070 0.92692 0.86103 1.42296 1.60059 1.29909 1.04896 1.19202 1.24867 1.08387 0.84297 0.91318 1.24704 1.00467 0.97832 0.98008 1.69647 1.37905 1.16185 1.34667 0.86276 0.77673 0.76864 0.85453 1.21320 1.21732 1.21306 1.22994 1.02623 0.92753 1.02007 1.22963 1.02306 0.95893 1.00355 0.92009 0.90835 0.91934 0.91595 0.91524 0.76773 0.85954 0.86232 0.76747 0.91022 0.91938 0.92063 0.89226 0.95583 0.96462 0.78154 0.93576 0.89341 0.88732 0.88955 0.89210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.72 10.03 37.16 0.37 -0.35 16 2 C 0.11 0.87 6.39 -4.04 -0.03 0.85 16 3 N -0.74 -5.77 5.56 -60.29 -0.33 -6.11 16 4 C 0.51 6.06 7.82 -10.98 -0.09 5.98 16 5 O -0.49 -8.68 14.18 -18.95 -0.27 -8.95 16 6 C -0.17 -1.50 6.19 -29.03 -0.18 -1.68 16 7 C 0.51 7.21 7.82 -10.99 -0.09 7.13 16 8 O -0.50 -9.78 14.18 -18.96 -0.27 -10.05 16 9 N -0.73 -9.21 5.56 -60.29 -0.33 -9.54 16 10 C 0.13 1.89 5.49 -4.04 -0.02 1.87 16 11 C -0.09 -1.35 5.20 -26.73 -0.14 -1.48 16 12 C -0.12 -1.92 1.65 -154.51 -0.25 -2.17 16 13 C 0.19 3.84 6.15 -4.04 -0.02 3.82 16 14 N -0.73 -18.26 5.23 -59.91 -0.31 -18.57 16 15 C -0.24 -6.64 9.99 -15.06 -0.15 -6.79 16 16 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 17 C -0.01 -0.42 5.50 -17.43 -0.10 -0.51 16 18 N -0.94 -27.91 13.06 55.49 0.72 -27.18 16 19 Si 0.91 22.54 29.55 -169.99 -5.02 17.52 16 20 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 21 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 22 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 23 C -0.17 -2.44 9.87 -26.73 -0.26 -2.70 16 24 C -0.18 -2.43 9.57 -26.73 -0.26 -2.68 16 25 H 0.06 0.23 8.14 -51.93 -0.42 -0.20 16 26 H 0.07 0.28 8.14 -51.93 -0.42 -0.15 16 27 H 0.06 0.25 8.14 -51.93 -0.42 -0.18 16 28 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 29 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 30 H 0.40 1.73 8.47 -40.82 -0.35 1.38 16 31 H 0.12 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.12 0.64 8.14 -51.93 -0.42 0.21 16 33 H 0.40 3.83 8.47 -40.82 -0.35 3.48 16 34 H 0.07 1.26 7.96 -51.92 -0.41 0.85 16 35 H 0.06 0.92 7.72 -51.93 -0.40 0.52 16 36 H 0.06 0.77 7.93 -51.93 -0.41 0.36 16 37 H 0.09 1.54 6.94 -51.93 -0.36 1.18 16 38 H 0.03 0.56 7.96 -51.93 -0.41 0.15 16 39 H 0.02 0.37 8.10 -51.93 -0.42 -0.05 16 40 H 0.38 10.00 6.80 -40.82 -0.28 9.72 16 41 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 42 H 0.09 1.16 8.07 -51.93 -0.42 0.74 16 43 H 0.09 1.46 8.14 -51.93 -0.42 1.04 16 44 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 45 H 0.09 1.10 7.90 -51.93 -0.41 0.69 16 LS Contribution 376.05 15.07 5.67 5.67 Total: -1.00 -37.41 376.05 -8.93 -46.34 By element: Atomic # 1 Polarization: 17.17 SS G_CDS: -7.57 Total: 9.60 kcal Atomic # 6 Polarization: 2.48 SS G_CDS: -1.21 Total: 1.27 kcal Atomic # 7 Polarization: -61.15 SS G_CDS: -0.26 Total: -61.40 kcal Atomic # 8 Polarization: -18.46 SS G_CDS: -0.54 Total: -19.00 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -5.02 Total: 17.52 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -37.41 -8.93 -46.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001164182437.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.682 kcal (2) G-P(sol) polarization free energy of solvation -37.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds