Wall clock time and date at job start Tue Mar 31 2020 03:47:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46503 * 109.46990 * 2 1 4 4 C 1.34780 * 119.99668 * 179.97438 * 3 2 1 5 5 O 1.21275 * 119.99953 * 359.97438 * 4 3 2 6 6 C 1.50703 * 119.99736 * 179.97438 * 4 3 2 7 7 C 1.50698 * 109.46859 * 179.97438 * 6 4 3 8 8 O 1.21278 * 120.00275 * 359.72886 * 7 6 4 9 9 N 1.34774 * 119.99432 * 179.97438 * 7 6 4 10 10 C 1.46500 * 119.99709 * 179.72525 * 9 7 6 11 11 C 1.53002 * 109.47205 * 180.02562 * 10 9 7 12 12 C 1.53007 * 109.47213 * 175.02174 * 11 10 9 13 13 C 1.52994 * 115.55143 * 278.03840 * 12 11 10 14 14 N 1.46500 * 109.46990 * 303.89478 * 13 12 11 15 15 C 1.36938 * 119.99934 * 175.59434 * 14 13 12 16 16 H 1.08001 * 120.00243 * 0.02562 * 15 14 13 17 17 C 1.38813 * 120.00102 * 180.02562 * 15 14 13 18 18 N 1.31619 * 119.99784 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00290 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.46880 * 59.99935 * 19 17 15 21 21 H 1.48494 * 109.47109 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.46692 * 300.00062 * 19 17 15 23 23 C 1.53001 * 117.49660 * 132.32119 * 12 11 10 24 24 C 1.53000 * 60.00148 * 252.51677 * 23 12 11 25 25 H 1.09005 * 109.47573 * 60.00100 * 1 2 3 26 26 H 1.08998 * 109.47325 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47517 * 300.00488 * 1 2 3 28 28 H 1.09002 * 109.47067 * 240.00111 * 2 1 3 29 29 H 1.09000 * 109.46887 * 119.99761 * 2 1 3 30 30 H 0.97000 * 119.99998 * 359.97438 * 3 2 1 31 31 H 1.09002 * 109.46918 * 60.00283 * 6 4 3 32 32 H 1.08998 * 109.46828 * 300.00124 * 6 4 3 33 33 H 0.96993 * 120.00881 * 359.73034 * 9 7 6 34 34 H 1.09008 * 109.47334 * 300.00473 * 10 9 7 35 35 H 1.09000 * 109.47607 * 60.00361 * 10 9 7 36 36 H 1.08994 * 109.47321 * 295.02070 * 11 10 9 37 37 H 1.09000 * 109.46939 * 55.03004 * 11 10 9 38 38 H 1.08996 * 109.47468 * 63.89589 * 13 12 11 39 39 H 1.09007 * 109.47285 * 183.89754 * 13 12 11 40 40 H 0.96999 * 120.00164 * 355.59535 * 14 13 12 41 41 H 0.97005 * 120.00089 * 179.97438 * 18 17 15 42 42 H 1.09004 * 117.50034 * 0.02562 * 23 12 11 43 43 H 1.08999 * 117.49281 * 145.02207 * 23 12 11 44 44 H 1.09000 * 117.49760 * 252.50949 * 24 23 12 45 45 H 1.08993 * 117.49485 * 107.49592 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 3.3434 1.6275 0.0005 5 8 4.1314 0.7057 0.0015 6 6 3.8457 3.0483 -0.0001 7 6 5.3527 3.0483 0.0013 8 8 5.9591 1.9980 0.0076 9 7 6.0265 4.2155 0.0006 10 6 7.4915 4.2155 0.0080 11 6 8.0015 5.6581 0.0061 12 6 9.5258 5.6603 0.1390 13 6 10.0642 5.5121 1.5634 14 7 9.5027 6.5677 2.4099 15 6 9.7716 6.5843 3.7525 16 1 10.3980 5.8194 4.1873 17 6 9.2391 7.5842 4.5548 18 7 8.4761 8.5166 4.0248 19 14 9.6065 7.6073 6.3861 20 1 11.0722 7.7218 6.5955 21 1 8.9242 8.7675 7.0133 22 1 9.1146 6.3504 7.0054 23 6 10.3179 6.5425 -0.8281 24 6 10.3343 5.0214 -0.9919 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.3879 2.1185 -0.0004 31 1 3.4820 3.5627 0.8895 32 1 3.4828 3.5616 -0.8905 33 1 5.5416 5.0555 -0.0048 34 1 7.8504 3.7048 0.9017 35 1 7.8594 3.6986 -0.8783 36 1 7.7176 6.1426 -0.9281 37 1 7.5630 6.1995 0.8443 38 1 9.7789 4.5379 1.9602 39 1 11.1510 5.5955 1.5516 40 1 8.9404 7.2549 2.0194 41 1 8.1037 9.2152 4.5855 42 1 9.7531 7.1216 -1.5587 43 1 11.2228 7.0177 -0.4495 44 1 11.2502 4.4959 -0.7212 45 1 9.7805 4.5996 -1.8306 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001164182437.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:47:30 Heat of formation + Delta-G solvation = -73.578281 kcal Electronic energy + Delta-G solvation = -23572.399256 eV Core-core repulsion = 20010.577923 eV Total energy + Delta-G solvation = -3561.821333 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.31659 -40.01340 -39.32920 -36.30596 -35.97943 -35.63194 -32.80832 -32.76453 -31.28596 -29.82253 -27.78897 -24.88670 -24.60738 -23.80973 -22.99114 -22.06365 -21.27396 -19.91514 -19.03414 -18.32913 -17.78573 -17.15442 -16.92028 -16.65837 -16.46681 -16.40425 -15.99317 -15.62030 -15.22172 -14.97327 -14.61067 -14.50765 -14.41002 -14.13097 -13.91385 -13.25872 -13.14055 -13.00456 -12.95679 -12.76839 -12.67447 -12.51884 -12.32969 -12.27519 -12.13266 -11.92646 -11.82191 -11.20629 -11.08532 -10.91091 -10.59630 -10.43993 -10.06451 -10.02321 -8.96769 -7.94356 -5.21642 1.46566 1.48949 1.55027 1.63536 1.75282 1.89919 2.53474 2.56860 2.91551 3.38343 3.56052 3.82696 3.85778 3.98104 4.02887 4.12384 4.18961 4.21677 4.28918 4.38377 4.43225 4.46864 4.50499 4.53098 4.68145 4.84515 4.95058 4.96800 5.00369 5.06947 5.08367 5.21358 5.27694 5.29262 5.34377 5.39809 5.48922 5.50426 5.52350 6.28377 6.58048 6.64829 7.29400 7.35612 7.42634 8.10892 8.38259 9.28568 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.013445 B = 0.002945 C = 0.002541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2081.981959 B = 9505.807442 C =11016.339584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.110 3.890 3 N -0.718 5.718 4 C 0.502 3.498 5 O -0.561 6.561 6 C -0.153 4.153 7 C 0.500 3.500 8 O -0.562 6.562 9 N -0.718 5.718 10 C 0.136 3.864 11 C -0.075 4.075 12 C -0.142 4.142 13 C 0.187 3.813 14 N -0.734 5.734 15 C -0.249 4.249 16 H 0.067 0.933 17 C -0.069 4.069 18 N -0.963 5.963 19 Si 0.969 3.031 20 H -0.280 1.280 21 H -0.291 1.291 22 H -0.282 1.282 23 C -0.160 4.160 24 C -0.155 4.155 25 H 0.074 0.926 26 H 0.080 0.920 27 H 0.071 0.929 28 H 0.052 0.948 29 H 0.047 0.953 30 H 0.419 0.581 31 H 0.157 0.843 32 H 0.168 0.832 33 H 0.416 0.584 34 H 0.033 0.967 35 H 0.066 0.934 36 H 0.092 0.908 37 H 0.062 0.938 38 H 0.012 0.988 39 H 0.013 0.987 40 H 0.378 0.622 41 H 0.252 0.748 42 H 0.111 0.889 43 H 0.082 0.918 44 H 0.094 0.906 45 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.868 -8.195 -14.369 23.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.014 4.014 3 N -0.374 5.374 4 C 0.288 3.712 5 O -0.438 6.438 6 C -0.195 4.195 7 C 0.286 3.714 8 O -0.439 6.439 9 N -0.372 5.372 10 C 0.011 3.989 11 C -0.113 4.113 12 C -0.142 4.142 13 C 0.061 3.939 14 N -0.377 5.377 15 C -0.380 4.380 16 H 0.085 0.915 17 C -0.262 4.262 18 N -0.614 5.614 19 Si 0.798 3.202 20 H -0.207 1.207 21 H -0.217 1.217 22 H -0.208 1.208 23 C -0.197 4.197 24 C -0.192 4.192 25 H 0.093 0.907 26 H 0.099 0.901 27 H 0.090 0.910 28 H 0.070 0.930 29 H 0.065 0.935 30 H 0.257 0.743 31 H 0.175 0.825 32 H 0.185 0.815 33 H 0.253 0.747 34 H 0.052 0.948 35 H 0.084 0.916 36 H 0.111 0.889 37 H 0.081 0.919 38 H 0.030 0.970 39 H 0.031 0.969 40 H 0.211 0.789 41 H 0.061 0.939 42 H 0.129 0.871 43 H 0.101 0.899 44 H 0.112 0.888 45 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -15.795 -9.695 -14.205 23.350 hybrid contribution -0.082 0.897 1.270 1.557 sum -15.877 -8.798 -12.935 22.288 Atomic orbital electron populations 1.21938 0.91453 1.04113 1.03544 1.21328 0.96408 0.82731 1.00945 1.45918 1.06148 1.09772 1.75545 1.20636 0.82861 0.91491 0.76204 1.90858 1.56309 1.47574 1.49029 1.21650 0.91561 0.95826 1.10456 1.20791 0.90989 0.83373 0.76235 1.90841 1.71024 1.32698 1.49299 1.45902 1.07138 1.08907 1.75236 1.21086 0.79706 0.97379 1.00681 1.21099 0.92337 0.94843 1.03035 1.21430 0.93758 1.07903 0.91158 1.20216 0.94615 0.90661 0.88429 1.42409 1.60066 1.30703 1.04512 1.19545 1.24420 1.08172 0.85905 0.91511 1.25459 1.00841 0.97801 1.02081 1.69782 1.38964 1.16728 1.35888 0.85285 0.77600 0.76753 0.80550 1.20666 1.21657 1.20844 1.23058 1.01830 0.93549 1.01296 1.23040 1.01680 0.95414 0.99092 0.90664 0.90119 0.91017 0.92987 0.93453 0.74302 0.82537 0.81455 0.74670 0.94840 0.91560 0.88905 0.91941 0.96982 0.96937 0.78855 0.93891 0.87094 0.89915 0.88773 0.86936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 10.03 71.98 0.72 -0.30 16 2 C 0.11 1.62 6.39 86.38 0.55 2.17 16 3 N -0.72 -10.02 5.56 -463.05 -2.57 -12.59 16 4 C 0.50 11.56 7.82 87.66 0.69 12.24 16 5 O -0.56 -20.68 14.18 20.43 0.29 -20.39 16 6 C -0.15 -2.37 6.19 29.10 0.18 -2.19 16 7 C 0.50 13.88 7.82 87.66 0.69 14.57 16 8 O -0.56 -22.83 14.18 20.42 0.29 -22.54 16 9 N -0.72 -17.29 5.56 -463.06 -2.57 -19.86 16 10 C 0.14 3.99 5.49 86.38 0.47 4.47 16 11 C -0.08 -2.14 5.20 30.60 0.16 -1.98 16 12 C -0.14 -4.49 1.65 -52.18 -0.09 -4.58 16 13 C 0.19 7.87 6.15 86.38 0.53 8.40 16 14 N -0.73 -37.57 5.23 -343.46 -1.80 -39.36 16 15 C -0.25 -14.18 9.99 84.03 0.84 -13.34 16 16 H 0.07 3.74 7.83 -2.91 -0.02 3.72 16 17 C -0.07 -3.98 5.50 84.86 0.47 -3.51 16 18 N -0.96 -57.90 13.06 21.65 0.28 -57.62 16 19 Si 0.97 46.54 29.55 68.60 2.03 48.57 16 20 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 21 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 22 H -0.28 -13.24 7.11 99.48 0.71 -12.54 16 23 C -0.16 -4.37 9.87 30.59 0.30 -4.07 16 24 C -0.15 -3.91 9.57 30.60 0.29 -3.62 16 25 H 0.07 0.33 8.14 -2.38 -0.02 0.31 16 26 H 0.08 0.46 8.14 -2.39 -0.02 0.44 16 27 H 0.07 0.38 8.14 -2.39 -0.02 0.36 16 28 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.42 2.26 8.47 -92.71 -0.79 1.48 16 31 H 0.16 1.40 8.14 -2.39 -0.02 1.38 16 32 H 0.17 0.99 8.14 -2.39 -0.02 0.98 16 33 H 0.42 7.00 8.47 -92.71 -0.79 6.21 16 34 H 0.03 1.24 7.96 -2.38 -0.02 1.22 16 35 H 0.07 1.91 7.72 -2.39 -0.02 1.89 16 36 H 0.09 2.06 7.93 -2.39 -0.02 2.04 16 37 H 0.06 2.14 6.94 -2.39 -0.02 2.12 16 38 H 0.01 0.54 7.96 -2.39 -0.02 0.52 16 39 H 0.01 0.54 8.10 -2.38 -0.02 0.53 16 40 H 0.38 20.04 6.80 -92.71 -0.63 19.41 16 41 H 0.25 14.68 8.31 -92.70 -0.77 13.90 16 42 H 0.11 2.54 8.07 -2.38 -0.02 2.52 16 43 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16 44 H 0.09 2.36 8.14 -2.39 -0.02 2.34 16 45 H 0.11 2.38 7.90 -2.39 -0.02 2.37 16 Total: -1.00 -86.19 376.05 0.56 -85.63 By element: Atomic # 1 Polarization: 31.10 SS G_CDS: -1.20 Total: 29.90 kcal Atomic # 6 Polarization: 2.46 SS G_CDS: 5.81 Total: 8.26 kcal Atomic # 7 Polarization: -122.77 SS G_CDS: -6.66 Total: -129.43 kcal Atomic # 8 Polarization: -43.51 SS G_CDS: 0.58 Total: -42.93 kcal Atomic # 14 Polarization: 46.54 SS G_CDS: 2.03 Total: 48.57 kcal Total: -86.19 0.56 -85.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001164182437.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.052 kcal (2) G-P(sol) polarization free energy of solvation -86.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.630 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds