Wall clock time and date at job start Tue Mar 31 2020 03:53:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 O 1.21275 * 119.99931 * 2 1 4 4 N 1.34776 * 119.99823 * 179.97438 * 2 1 3 5 5 C 1.46500 * 119.99752 * 185.01908 * 4 2 1 6 6 C 1.50699 * 110.05622 * 54.36101 * 5 4 2 7 7 O 1.21281 * 119.99938 * 217.19346 * 6 5 4 8 8 N 1.34773 * 120.00023 * 37.18165 * 6 5 4 9 9 C 1.46505 * 120.00118 * 175.00058 * 8 6 5 10 10 C 1.53000 * 109.47215 * 180.02562 * 9 8 6 11 11 C 1.52999 * 109.46895 * 179.97438 * 10 9 8 12 12 N 1.46502 * 109.47202 * 179.97438 * 11 10 9 13 13 C 1.36936 * 120.00154 * 180.02562 * 12 11 10 14 14 H 1.07999 * 119.99964 * 359.97438 * 13 12 11 15 15 C 1.38812 * 119.99712 * 180.02562 * 13 12 11 16 16 N 1.31612 * 120.00314 * 359.97438 * 15 13 12 17 17 Si 1.86807 * 119.99522 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47207 * 359.97438 * 17 15 13 19 19 H 1.48497 * 109.47006 * 119.99803 * 17 15 13 20 20 H 1.48503 * 109.46773 * 239.99407 * 17 15 13 21 21 C 1.54263 * 110.03411 * 292.94035 * 5 4 2 22 22 C 1.54888 * 104.19487 * 264.32668 * 21 5 4 23 23 C 1.54895 * 102.74979 * 322.05605 * 22 21 5 24 24 C 1.53879 * 110.03054 * 175.77283 * 5 4 2 25 25 H 1.08995 * 109.47295 * 239.99953 * 1 2 3 26 26 H 1.08998 * 109.46986 * 0.02562 * 1 2 3 27 27 H 1.08999 * 109.46830 * 120.00307 * 1 2 3 28 28 H 0.97004 * 119.99986 * 5.02685 * 4 2 1 29 29 H 0.97000 * 120.00296 * 355.00209 * 8 6 5 30 30 H 1.09004 * 109.46379 * 300.00142 * 9 8 6 31 31 H 1.08999 * 109.46924 * 59.99881 * 9 8 6 32 32 H 1.08997 * 109.46600 * 299.99486 * 10 9 8 33 33 H 1.08999 * 109.47277 * 59.99463 * 10 9 8 34 34 H 1.09005 * 109.47329 * 299.99894 * 11 10 9 35 35 H 1.08999 * 109.47512 * 59.99710 * 11 10 9 36 36 H 0.97001 * 119.99594 * 0.02562 * 12 11 10 37 37 H 0.97003 * 120.00302 * 180.02562 * 16 15 13 38 38 H 1.08998 * 110.48870 * 145.65041 * 21 5 4 39 39 H 1.08994 * 110.48661 * 23.00147 * 21 5 4 40 40 H 1.09001 * 110.75384 * 203.74342 * 22 21 5 41 41 H 1.09001 * 110.75771 * 80.37380 * 22 21 5 42 42 H 1.09002 * 110.48580 * 156.62150 * 23 22 21 43 43 H 1.08997 * 110.48599 * 279.13294 * 23 22 21 44 44 H 1.08999 * 110.03202 * 0.02562 * 24 5 4 45 45 H 1.08997 * 110.03284 * 238.57096 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.6417 -1.1696 0.1115 6 6 4.0685 -0.3962 1.3325 7 8 5.0690 0.2884 1.2976 8 7 3.3382 -0.4650 2.4631 9 6 3.8102 0.1975 3.6816 10 6 2.8039 -0.0341 4.8106 11 6 3.2973 0.6573 6.0832 12 7 2.3335 0.4360 7.1641 13 6 2.5642 0.9648 8.4060 14 1 3.4569 1.5445 8.5888 15 6 1.6512 0.7547 9.4303 16 7 0.5636 0.0478 9.2077 17 14 1.9656 1.4766 11.1243 18 1 3.2486 2.2244 11.1134 19 1 0.8580 2.3983 11.4829 20 1 2.0405 0.3804 12.1233 21 6 4.2688 -0.5483 -1.1535 22 6 4.6052 -1.7669 -2.0484 23 6 5.0865 -2.8223 -1.0219 24 6 4.1616 -2.6155 0.1952 25 1 -0.3633 -0.5138 0.8899 26 1 -0.3633 1.0276 -0.0005 27 1 -0.3633 -0.5139 -0.8900 28 1 1.6987 -2.0057 -0.0727 29 1 2.5000 -0.9532 2.4702 30 1 4.7779 -0.2147 3.9675 31 1 3.9109 1.2672 3.4978 32 1 1.8361 0.3778 4.5247 33 1 2.7036 -1.1038 4.9941 34 1 4.2651 0.2450 6.3688 35 1 3.3979 1.7270 5.8999 36 1 1.5319 -0.0850 7.0000 37 1 -0.0746 -0.0987 9.9234 38 1 5.1757 0.0004 -0.8997 39 1 3.5533 0.1053 -1.6524 40 1 5.4007 -1.5216 -2.7520 41 1 3.7170 -2.1167 -2.5746 42 1 4.9677 -3.8282 -1.4248 43 1 6.1262 -2.6422 -0.7486 44 1 3.3270 -3.3154 0.1528 45 1 4.7225 -2.7577 1.1188 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168198454.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:53:34 Heat of formation + Delta-G solvation = -106.148916 kcal Electronic energy + Delta-G solvation = -24521.321687 eV Core-core repulsion = 20958.087985 eV Total energy + Delta-G solvation = -3563.233702 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.07316 -39.97256 -38.44317 -37.47635 -36.01460 -34.78790 -33.72053 -31.61518 -30.85734 -29.81878 -28.55333 -26.95105 -24.68291 -22.88306 -22.66227 -22.50131 -21.26906 -20.46797 -19.24822 -18.67989 -17.92826 -17.36789 -16.92510 -16.70442 -16.61740 -16.12342 -15.97811 -15.39488 -15.33360 -15.27330 -14.85372 -14.61105 -14.19994 -13.90690 -13.61943 -13.37061 -13.19653 -12.96381 -12.86423 -12.76686 -12.59737 -12.48084 -12.35494 -12.13305 -12.12643 -12.06499 -11.95373 -11.82146 -11.54500 -11.22701 -10.98379 -10.90737 -10.22361 -10.09164 -9.04848 -7.98719 -5.28160 1.43841 1.46808 1.47449 1.57898 1.60396 2.02309 2.22464 2.54531 3.35113 3.41051 3.44107 3.68856 3.73512 3.91558 3.99863 4.17870 4.21724 4.34983 4.38814 4.43090 4.48240 4.54469 4.64500 4.65457 4.68560 4.70007 4.76410 4.80818 4.93991 5.04330 5.14605 5.18039 5.19269 5.21757 5.24728 5.34521 5.42335 5.45025 5.46907 6.24074 6.41256 6.55258 7.13462 7.25014 7.30683 8.03518 8.29010 9.24954 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.024464 B = 0.002760 C = 0.002632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1144.258183 B =10141.477778 C =10636.859891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.499 3.501 3 O -0.586 6.586 4 N -0.706 5.706 5 C 0.160 3.840 6 C 0.514 3.486 7 O -0.581 6.581 8 N -0.712 5.712 9 C 0.133 3.867 10 C -0.114 4.114 11 C 0.153 3.847 12 N -0.745 5.745 13 C -0.251 4.251 14 H 0.073 0.927 15 C -0.073 4.073 16 N -0.967 5.967 17 Si 0.975 3.025 18 H -0.269 1.269 19 H -0.291 1.291 20 H -0.289 1.289 21 C -0.120 4.120 22 C -0.114 4.114 23 C -0.119 4.119 24 C -0.114 4.114 25 H 0.112 0.888 26 H 0.079 0.921 27 H 0.120 0.880 28 H 0.427 0.573 29 H 0.410 0.590 30 H 0.066 0.934 31 H 0.047 0.953 32 H 0.069 0.931 33 H 0.081 0.919 34 H 0.024 0.976 35 H 0.016 0.984 36 H 0.377 0.623 37 H 0.253 0.747 38 H 0.058 0.942 39 H 0.059 0.941 40 H 0.074 0.926 41 H 0.088 0.912 42 H 0.101 0.899 43 H 0.059 0.941 44 H 0.120 0.880 45 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.098 -11.592 -26.569 29.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.288 3.712 3 O -0.465 6.465 4 N -0.364 5.364 5 C 0.070 3.930 6 C 0.301 3.699 7 O -0.459 6.459 8 N -0.364 5.364 9 C 0.008 3.992 10 C -0.152 4.152 11 C 0.026 3.974 12 N -0.388 5.388 13 C -0.382 4.382 14 H 0.091 0.909 15 C -0.265 4.265 16 N -0.617 5.617 17 Si 0.803 3.197 18 H -0.193 1.193 19 H -0.218 1.218 20 H -0.216 1.216 21 C -0.160 4.160 22 C -0.151 4.151 23 C -0.157 4.157 24 C -0.152 4.152 25 H 0.131 0.869 26 H 0.098 0.902 27 H 0.139 0.861 28 H 0.267 0.733 29 H 0.246 0.754 30 H 0.085 0.915 31 H 0.065 0.935 32 H 0.087 0.913 33 H 0.099 0.901 34 H 0.042 0.958 35 H 0.034 0.966 36 H 0.209 0.791 37 H 0.062 0.938 38 H 0.077 0.923 39 H 0.078 0.922 40 H 0.093 0.907 41 H 0.107 0.893 42 H 0.120 0.880 43 H 0.078 0.922 44 H 0.139 0.861 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 2.346 -10.269 -26.425 28.447 hybrid contribution -0.655 0.252 1.204 1.393 sum 1.691 -10.018 -25.221 27.190 Atomic orbital electron populations 1.21959 0.87879 1.05886 1.06907 1.21754 0.92396 0.83010 0.74026 1.90802 1.71944 1.33472 1.50262 1.46174 1.04955 1.10023 1.75257 1.21151 0.82228 0.97734 0.91887 1.21241 0.82984 0.80616 0.85096 1.90655 1.29068 1.41741 1.84473 1.45810 1.25677 1.54845 1.10056 1.21080 0.97637 0.96952 0.83488 1.21663 0.98570 1.01955 0.93000 1.20646 0.92522 0.96935 0.87269 1.42514 1.24762 1.63892 1.07664 1.19665 1.04462 1.25692 0.88424 0.90895 1.25577 0.97065 1.01793 1.02113 1.69802 1.12777 1.45860 1.33306 0.85059 0.77477 0.77430 0.79692 1.19324 1.21805 1.21624 1.22603 1.00359 0.98856 0.94136 1.22504 1.02066 0.93435 0.97090 1.22374 0.98674 1.00586 0.94063 1.22449 1.01599 0.90739 1.00419 0.86924 0.90206 0.86147 0.73293 0.75368 0.91543 0.93480 0.91273 0.90065 0.95761 0.96605 0.79126 0.93796 0.92311 0.92201 0.90721 0.89324 0.88021 0.92216 0.86140 0.91167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.63 10.32 71.24 0.74 -0.90 16 2 C 0.50 9.29 6.79 87.66 0.60 9.88 16 3 O -0.59 -18.42 14.93 -3.01 -0.04 -18.46 16 4 N -0.71 -8.75 4.48 -423.02 -1.89 -10.65 16 5 C 0.16 2.99 0.86 3.58 0.00 2.99 16 6 C 0.51 14.77 4.96 87.66 0.44 15.20 16 7 O -0.58 -22.28 15.53 -3.03 -0.05 -22.33 16 8 N -0.71 -18.35 5.27 -463.05 -2.44 -20.79 16 9 C 0.13 4.03 5.68 86.38 0.49 4.52 16 10 C -0.11 -3.59 5.44 30.59 0.17 -3.42 16 11 C 0.15 6.33 6.26 86.38 0.54 6.87 16 12 N -0.75 -38.60 5.60 -343.45 -1.92 -40.52 16 13 C -0.25 -14.34 9.99 84.03 0.84 -13.50 16 14 H 0.07 4.06 7.83 -2.91 -0.02 4.04 16 15 C -0.07 -4.23 5.50 84.86 0.47 -3.77 16 16 N -0.97 -58.94 13.06 21.65 0.28 -58.66 16 17 Si 0.97 46.49 29.55 68.60 2.03 48.52 16 18 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 19 H -0.29 -13.79 7.11 99.48 0.71 -13.09 16 20 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 21 C -0.12 -2.59 5.56 31.67 0.18 -2.41 16 22 C -0.11 -1.40 6.91 31.89 0.22 -1.18 16 23 C -0.12 -1.23 6.83 31.67 0.22 -1.02 16 24 C -0.11 -1.30 6.23 31.32 0.20 -1.10 16 25 H 0.11 0.67 8.14 -2.39 -0.02 0.65 16 26 H 0.08 1.06 8.12 -2.39 -0.02 1.05 16 27 H 0.12 0.40 8.14 -2.39 -0.02 0.38 16 28 H 0.43 1.35 8.08 -92.71 -0.75 0.60 16 29 H 0.41 8.11 7.73 -92.71 -0.72 7.39 16 30 H 0.07 2.04 8.14 -2.38 -0.02 2.02 16 31 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 32 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 33 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 34 H 0.02 1.00 8.14 -2.38 -0.02 0.98 16 35 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16 36 H 0.38 20.19 7.67 -92.71 -0.71 19.48 16 37 H 0.25 14.83 8.31 -92.71 -0.77 14.06 16 38 H 0.06 1.68 6.78 -2.39 -0.02 1.66 16 39 H 0.06 1.47 6.80 -2.39 -0.02 1.45 16 40 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 41 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 42 H 0.10 0.52 8.14 -2.39 -0.02 0.50 16 43 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 44 H 0.12 0.46 7.45 -2.39 -0.02 0.44 16 45 H 0.07 1.00 7.67 -2.39 -0.02 0.98 16 Total: -1.00 -83.24 365.22 -0.13 -83.36 By element: Atomic # 1 Polarization: 28.53 SS G_CDS: -1.17 Total: 27.36 kcal Atomic # 6 Polarization: 7.09 SS G_CDS: 5.08 Total: 12.17 kcal Atomic # 7 Polarization: -124.65 SS G_CDS: -5.97 Total: -130.62 kcal Atomic # 8 Polarization: -40.70 SS G_CDS: -0.09 Total: -40.79 kcal Atomic # 14 Polarization: 46.49 SS G_CDS: 2.03 Total: 48.52 kcal Total: -83.24 -0.13 -83.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168198454.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.785 kcal (2) G-P(sol) polarization free energy of solvation -83.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds