Wall clock time and date at job start Tue Mar 31 2020 03:52:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21283 * 120.00262 * 2 1 4 4 N 1.34777 * 119.99928 * 179.71906 * 2 1 3 5 5 C 1.46931 * 120.63086 * 0.02562 * 4 2 1 6 6 C 1.53622 * 108.54424 * 126.36867 * 5 4 2 7 7 C 1.53036 * 109.24613 * 54.85288 * 6 5 4 8 8 C 1.50702 * 109.46241 * 178.49235 * 7 6 5 9 9 O 1.21281 * 119.99915 * 120.06946 * 8 7 6 10 10 N 1.34773 * 119.99811 * 300.06745 * 8 7 6 11 11 C 1.46496 * 119.99867 * 179.97438 * 10 8 7 12 12 C 1.53005 * 109.47209 * 180.02562 * 11 10 8 13 13 C 1.52995 * 109.47149 * 179.97438 * 12 11 10 14 14 N 1.46506 * 109.47178 * 179.97438 * 13 12 11 15 15 C 1.36935 * 120.00190 * 180.02562 * 14 13 12 16 16 H 1.07999 * 119.99963 * 359.97438 * 15 14 13 17 17 C 1.38812 * 120.00191 * 179.97438 * 15 14 13 18 18 N 1.31618 * 119.99630 * 359.97438 * 17 15 14 19 19 Si 1.86795 * 120.00054 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.46897 * 60.00376 * 19 17 15 21 21 H 1.48504 * 109.47033 * 179.97438 * 19 17 15 22 22 H 1.48497 * 109.47545 * 300.00383 * 19 17 15 23 23 C 1.53046 * 109.53689 * 298.51382 * 7 6 5 24 24 C 1.46925 * 120.62933 * 180.27723 * 4 2 1 25 25 H 1.09001 * 109.47107 * 0.02562 * 1 2 3 26 26 H 1.09004 * 109.46965 * 120.00305 * 1 2 3 27 27 H 1.08994 * 109.46990 * 240.00159 * 1 2 3 28 28 H 1.09000 * 109.58052 * 246.19939 * 5 4 2 29 29 H 1.08995 * 109.58699 * 6.62138 * 5 4 2 30 30 H 1.09003 * 109.63253 * 294.86246 * 6 5 4 31 31 H 1.08998 * 109.43170 * 174.72646 * 6 5 4 32 32 H 1.08996 * 109.44694 * 58.52287 * 7 6 5 33 33 H 0.97003 * 120.00398 * 0.02562 * 10 8 7 34 34 H 1.09005 * 109.47755 * 299.99960 * 11 10 8 35 35 H 1.08996 * 109.47379 * 60.00575 * 11 10 8 36 36 H 1.08999 * 109.47087 * 300.00212 * 12 11 10 37 37 H 1.09000 * 109.47239 * 59.99881 * 12 11 10 38 38 H 1.08996 * 109.47566 * 299.99624 * 13 12 11 39 39 H 1.09000 * 109.47114 * 59.99845 * 13 12 11 40 40 H 0.97000 * 119.99575 * 0.02562 * 14 13 12 41 41 H 0.97005 * 119.99488 * 180.02562 * 18 17 15 42 42 H 1.08997 * 109.49431 * 301.40868 * 23 7 6 43 43 H 1.08999 * 109.52034 * 181.33388 * 23 7 6 44 44 H 1.08994 * 109.58707 * 353.37218 * 24 4 2 45 45 H 1.09001 * 109.58947 * 113.66077 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1809 -1.1672 0.0057 5 6 1.4603 -2.4476 0.0114 6 6 1.9738 -3.3025 -1.1571 7 6 3.4946 -3.4372 -1.0535 8 6 3.9995 -4.3057 -2.1768 9 8 4.7960 -3.8611 -2.9761 10 7 3.5660 -5.5765 -2.2930 11 6 4.0564 -6.4207 -3.3853 12 6 3.4121 -7.8051 -3.2887 13 6 3.9237 -8.6865 -4.4298 14 7 3.3073 -10.0123 -4.3369 15 6 3.6166 -10.9772 -5.2580 16 1 4.3147 -10.7608 -6.0530 17 6 3.0329 -12.2336 -5.1697 18 7 2.1825 -12.4974 -4.2004 19 14 3.4544 -13.5497 -6.4265 20 1 4.9125 -13.8276 -6.3820 21 1 2.7043 -14.7923 -6.1124 22 1 3.0820 -13.0756 -7.7836 23 6 4.1389 -2.0523 -1.1506 24 6 3.6500 -1.1833 0.0119 25 1 -0.3633 1.0277 -0.0005 26 1 -0.3633 -0.5139 -0.8900 27 1 -0.3633 -0.5138 0.8900 28 1 1.6419 -2.9648 0.9536 29 1 0.3922 -2.2664 -0.1082 30 1 1.7144 -2.8248 -2.1020 31 1 1.5170 -4.2911 -1.1114 32 1 3.7544 -3.8922 -0.0977 33 1 2.9288 -5.9320 -1.6539 34 1 3.7968 -5.9655 -4.3411 35 1 5.1395 -6.5178 -3.3114 36 1 3.6713 -8.2606 -2.3330 37 1 2.3290 -7.7077 -3.3629 38 1 3.6641 -8.2309 -5.3853 39 1 5.0069 -8.7838 -4.3561 40 1 2.6800 -10.2065 -3.6230 41 1 1.7749 -13.3755 -4.1385 42 1 3.8592 -1.5865 -2.0955 43 1 5.2233 -2.1508 -1.1006 44 1 4.0271 -0.1677 -0.1075 45 1 4.0070 -1.5971 0.9551 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001175688152.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:52:53 Heat of formation + Delta-G solvation = -78.274012 kcal Electronic energy + Delta-G solvation = -23487.288276 eV Core-core repulsion = 19925.263320 eV Total energy + Delta-G solvation = -3562.024955 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.82711 -39.72902 -37.43657 -36.07807 -34.42140 -33.55780 -32.22732 -31.68320 -29.88411 -29.55079 -26.57642 -24.94305 -23.70374 -22.79288 -21.81803 -21.24117 -20.22935 -19.40753 -17.80881 -17.17351 -16.80137 -16.32967 -16.00644 -15.94704 -15.67769 -14.89250 -14.65537 -14.49395 -14.11907 -14.05604 -13.70491 -13.43935 -13.30276 -13.12927 -13.00463 -12.66677 -12.58653 -12.39928 -12.14358 -11.74959 -11.69225 -11.21899 -11.10967 -11.00047 -10.94282 -10.81719 -10.65223 -10.20448 -10.14837 -9.89095 -9.71660 -9.14014 -9.08853 -8.90695 -6.97110 -5.80383 -3.09389 2.22656 2.48360 2.57155 3.05999 3.42541 3.46658 3.47867 4.06302 4.18215 4.28414 4.38755 4.56160 4.58577 4.74769 4.79125 4.86511 4.90461 4.96316 5.01740 5.09827 5.20755 5.24670 5.27285 5.37577 5.42736 5.54206 5.56937 5.58361 5.62908 5.90505 5.94602 6.01337 6.07894 6.14460 6.27576 6.39439 6.74498 6.78721 6.95065 7.39304 7.66798 7.75985 8.10760 8.38674 9.49743 10.06429 10.41153 11.42535 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.036693 B = 0.002049 C = 0.001977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 762.902412 B =13661.317045 C =14158.333576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.512 3.488 3 O -0.548 6.548 4 N -0.615 5.615 5 C 0.108 3.892 6 C -0.128 4.128 7 C -0.107 4.107 8 C 0.514 3.486 9 O -0.540 6.540 10 N -0.726 5.726 11 C 0.121 3.879 12 C -0.137 4.137 13 C 0.156 3.844 14 N -0.734 5.734 15 C -0.241 4.241 16 H 0.071 0.929 17 C -0.015 4.015 18 N -0.935 5.935 19 Si 0.909 3.091 20 H -0.286 1.286 21 H -0.291 1.291 22 H -0.285 1.285 23 C -0.113 4.113 24 C 0.110 3.890 25 H 0.091 0.909 26 H 0.089 0.911 27 H 0.088 0.912 28 H 0.076 0.924 29 H 0.092 0.908 30 H 0.076 0.924 31 H 0.084 0.916 32 H 0.100 0.900 33 H 0.400 0.600 34 H 0.068 0.932 35 H 0.068 0.932 36 H 0.068 0.932 37 H 0.068 0.932 38 H 0.021 0.979 39 H 0.021 0.979 40 H 0.383 0.617 41 H 0.256 0.744 42 H 0.075 0.925 43 H 0.085 0.915 44 H 0.096 0.904 45 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.856 22.604 12.922 26.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.302 3.698 3 O -0.425 6.425 4 N -0.350 5.350 5 C -0.015 4.015 6 C -0.167 4.167 7 C -0.129 4.129 8 C 0.300 3.700 9 O -0.417 6.417 10 N -0.378 5.378 11 C -0.002 4.002 12 C -0.175 4.175 13 C 0.028 3.972 14 N -0.378 5.378 15 C -0.372 4.372 16 H 0.089 0.911 17 C -0.211 4.211 18 N -0.584 5.584 19 Si 0.740 3.260 20 H -0.212 1.212 21 H -0.217 1.217 22 H -0.212 1.212 23 C -0.152 4.152 24 C -0.012 4.012 25 H 0.110 0.890 26 H 0.108 0.892 27 H 0.107 0.893 28 H 0.094 0.906 29 H 0.110 0.890 30 H 0.095 0.905 31 H 0.103 0.897 32 H 0.118 0.882 33 H 0.234 0.766 34 H 0.086 0.914 35 H 0.086 0.914 36 H 0.087 0.913 37 H 0.087 0.913 38 H 0.039 0.961 39 H 0.039 0.961 40 H 0.217 0.783 41 H 0.066 0.934 42 H 0.094 0.906 43 H 0.103 0.897 44 H 0.114 0.886 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -2.885 23.389 12.186 26.530 hybrid contribution -0.348 -1.325 -0.163 1.380 sum -3.233 22.064 12.023 25.334 Atomic orbital electron populations 1.21957 0.91709 1.05557 1.04214 1.20851 0.90709 0.82982 0.75299 1.90720 1.70798 1.31072 1.49935 1.48207 1.07108 1.06068 1.73612 1.21881 0.97080 0.83810 0.98713 1.22024 0.93748 1.01176 0.99756 1.21339 0.96500 0.96509 0.98537 1.20539 0.81272 0.82064 0.86173 1.90717 1.34142 1.73310 1.43488 1.46104 1.47263 1.12642 1.31774 1.21369 0.99144 0.90125 0.89594 1.21938 1.00868 0.93563 1.01137 1.20522 0.95843 0.86392 0.94468 1.42326 1.53107 1.07932 1.34425 1.19201 1.20999 0.91435 1.05585 0.91141 1.24758 0.99667 0.97828 0.98818 1.69650 1.33085 1.22142 1.33475 0.86231 0.77685 0.81225 0.80835 1.21219 1.21656 1.21211 1.21723 1.01216 0.92973 0.99260 1.21649 0.79183 1.02166 0.98244 0.88979 0.89236 0.89306 0.90614 0.88962 0.90541 0.89723 0.88186 0.76588 0.91397 0.91370 0.91308 0.91323 0.96068 0.96067 0.78312 0.93444 0.90645 0.89684 0.88604 0.91275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.81 8.67 36.01 0.31 -0.50 16 2 C 0.51 4.47 7.81 -10.98 -0.09 4.39 16 3 O -0.55 -7.23 16.50 5.55 0.09 -7.14 16 4 N -0.62 -4.32 2.97 -172.53 -0.51 -4.83 16 5 C 0.11 0.44 6.37 -3.48 -0.02 0.42 16 6 C -0.13 -0.68 5.28 -26.39 -0.14 -0.81 16 7 C -0.11 -0.78 2.49 -91.73 -0.23 -1.00 16 8 C 0.51 5.71 7.15 -10.99 -0.08 5.63 16 9 O -0.54 -8.38 15.98 5.56 0.09 -8.29 16 10 N -0.73 -7.39 5.44 -60.29 -0.33 -7.72 16 11 C 0.12 1.56 5.67 -4.04 -0.02 1.54 16 12 C -0.14 -1.98 5.44 -26.73 -0.15 -2.13 16 13 C 0.16 3.04 6.26 -4.04 -0.03 3.02 16 14 N -0.73 -18.38 5.60 -59.91 -0.34 -18.72 16 15 C -0.24 -6.75 9.99 -15.06 -0.15 -6.90 16 16 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 17 C -0.01 -0.43 5.50 -17.43 -0.10 -0.52 16 18 N -0.93 -27.99 13.06 55.49 0.72 -27.27 16 19 Si 0.91 22.30 29.55 -169.99 -5.02 17.28 16 20 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 21 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 22 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 23 C -0.11 -0.94 4.65 -26.63 -0.12 -1.06 16 24 C 0.11 0.82 6.43 -3.73 -0.02 0.80 16 25 H 0.09 0.46 8.12 -51.93 -0.42 0.04 16 26 H 0.09 0.29 7.70 -51.93 -0.40 -0.11 16 27 H 0.09 0.23 7.93 -51.93 -0.41 -0.18 16 28 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 29 H 0.09 0.21 5.94 -51.93 -0.31 -0.10 16 30 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.08 0.32 7.52 -51.93 -0.39 -0.07 16 32 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.40 2.97 7.87 -40.82 -0.32 2.65 16 34 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 37 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 38 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.38 9.95 7.67 -40.82 -0.31 9.63 16 41 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 42 H 0.07 0.78 8.13 -51.93 -0.42 0.35 16 43 H 0.08 0.75 8.07 -51.93 -0.42 0.33 16 44 H 0.10 0.88 7.00 -51.93 -0.36 0.52 16 45 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 LS Contribution 365.64 15.07 5.51 5.51 Total: -1.00 -36.13 365.64 -8.16 -44.29 By element: Atomic # 1 Polarization: 11.58 SS G_CDS: -7.54 Total: 4.04 kcal Atomic # 6 Polarization: 3.68 SS G_CDS: -0.83 Total: 2.85 kcal Atomic # 7 Polarization: -58.08 SS G_CDS: -0.45 Total: -58.53 kcal Atomic # 8 Polarization: -15.62 SS G_CDS: 0.18 Total: -15.43 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.28 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -36.13 -8.16 -44.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001175688152.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.986 kcal (2) G-P(sol) polarization free energy of solvation -36.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds