Wall clock time and date at job start Tue Mar 31 2020 03:52:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21283 * 120.00262 * 2 1 4 4 N 1.34777 * 119.99928 * 179.71906 * 2 1 3 5 5 C 1.46931 * 120.63086 * 0.02562 * 4 2 1 6 6 C 1.53622 * 108.54424 * 126.36867 * 5 4 2 7 7 C 1.53036 * 109.24613 * 54.85288 * 6 5 4 8 8 C 1.50702 * 109.46241 * 178.49235 * 7 6 5 9 9 O 1.21281 * 119.99915 * 120.06946 * 8 7 6 10 10 N 1.34773 * 119.99811 * 300.06745 * 8 7 6 11 11 C 1.46496 * 119.99867 * 179.97438 * 10 8 7 12 12 C 1.53005 * 109.47209 * 180.02562 * 11 10 8 13 13 C 1.52995 * 109.47149 * 179.97438 * 12 11 10 14 14 N 1.46506 * 109.47178 * 179.97438 * 13 12 11 15 15 C 1.36935 * 120.00190 * 180.02562 * 14 13 12 16 16 H 1.07999 * 119.99963 * 359.97438 * 15 14 13 17 17 C 1.38812 * 120.00191 * 179.97438 * 15 14 13 18 18 N 1.31618 * 119.99630 * 359.97438 * 17 15 14 19 19 Si 1.86795 * 120.00054 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.46897 * 60.00376 * 19 17 15 21 21 H 1.48504 * 109.47033 * 179.97438 * 19 17 15 22 22 H 1.48497 * 109.47545 * 300.00383 * 19 17 15 23 23 C 1.53046 * 109.53689 * 298.51382 * 7 6 5 24 24 C 1.46925 * 120.62933 * 180.27723 * 4 2 1 25 25 H 1.09001 * 109.47107 * 0.02562 * 1 2 3 26 26 H 1.09004 * 109.46965 * 120.00305 * 1 2 3 27 27 H 1.08994 * 109.46990 * 240.00159 * 1 2 3 28 28 H 1.09000 * 109.58052 * 246.19939 * 5 4 2 29 29 H 1.08995 * 109.58699 * 6.62138 * 5 4 2 30 30 H 1.09003 * 109.63253 * 294.86246 * 6 5 4 31 31 H 1.08998 * 109.43170 * 174.72646 * 6 5 4 32 32 H 1.08996 * 109.44694 * 58.52287 * 7 6 5 33 33 H 0.97003 * 120.00398 * 0.02562 * 10 8 7 34 34 H 1.09005 * 109.47755 * 299.99960 * 11 10 8 35 35 H 1.08996 * 109.47379 * 60.00575 * 11 10 8 36 36 H 1.08999 * 109.47087 * 300.00212 * 12 11 10 37 37 H 1.09000 * 109.47239 * 59.99881 * 12 11 10 38 38 H 1.08996 * 109.47566 * 299.99624 * 13 12 11 39 39 H 1.09000 * 109.47114 * 59.99845 * 13 12 11 40 40 H 0.97000 * 119.99575 * 0.02562 * 14 13 12 41 41 H 0.97005 * 119.99488 * 180.02562 * 18 17 15 42 42 H 1.08997 * 109.49431 * 301.40868 * 23 7 6 43 43 H 1.08999 * 109.52034 * 181.33388 * 23 7 6 44 44 H 1.08994 * 109.58707 * 353.37218 * 24 4 2 45 45 H 1.09001 * 109.58947 * 113.66077 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1809 -1.1672 0.0057 5 6 1.4603 -2.4476 0.0114 6 6 1.9738 -3.3025 -1.1571 7 6 3.4946 -3.4372 -1.0535 8 6 3.9995 -4.3057 -2.1768 9 8 4.7960 -3.8611 -2.9761 10 7 3.5660 -5.5765 -2.2930 11 6 4.0564 -6.4207 -3.3853 12 6 3.4121 -7.8051 -3.2887 13 6 3.9237 -8.6865 -4.4298 14 7 3.3073 -10.0123 -4.3369 15 6 3.6166 -10.9772 -5.2580 16 1 4.3147 -10.7608 -6.0530 17 6 3.0329 -12.2336 -5.1697 18 7 2.1825 -12.4974 -4.2004 19 14 3.4544 -13.5497 -6.4265 20 1 4.9125 -13.8276 -6.3820 21 1 2.7043 -14.7923 -6.1124 22 1 3.0820 -13.0756 -7.7836 23 6 4.1389 -2.0523 -1.1506 24 6 3.6500 -1.1833 0.0119 25 1 -0.3633 1.0277 -0.0005 26 1 -0.3633 -0.5139 -0.8900 27 1 -0.3633 -0.5138 0.8900 28 1 1.6419 -2.9648 0.9536 29 1 0.3922 -2.2664 -0.1082 30 1 1.7144 -2.8248 -2.1020 31 1 1.5170 -4.2911 -1.1114 32 1 3.7544 -3.8922 -0.0977 33 1 2.9288 -5.9320 -1.6539 34 1 3.7968 -5.9655 -4.3411 35 1 5.1395 -6.5178 -3.3114 36 1 3.6713 -8.2606 -2.3330 37 1 2.3290 -7.7077 -3.3629 38 1 3.6641 -8.2309 -5.3853 39 1 5.0069 -8.7838 -4.3561 40 1 2.6800 -10.2065 -3.6230 41 1 1.7749 -13.3755 -4.1385 42 1 3.8592 -1.5865 -2.0955 43 1 5.2233 -2.1508 -1.1006 44 1 4.0271 -0.1677 -0.1075 45 1 4.0070 -1.5971 0.9551 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001175688152.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:52:53 Heat of formation + Delta-G solvation = -105.080523 kcal Electronic energy + Delta-G solvation = -23488.450693 eV Core-core repulsion = 19925.263320 eV Total energy + Delta-G solvation = -3563.187373 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.51687 -40.54948 -38.17109 -37.45403 -35.91945 -34.30111 -33.67503 -32.47560 -31.15703 -30.29476 -27.57893 -26.28841 -24.42327 -24.14669 -22.62655 -22.56987 -21.09284 -19.99009 -19.19621 -18.39255 -17.71281 -17.17557 -16.87156 -16.75198 -16.47131 -16.43581 -15.80636 -15.29605 -15.26737 -15.03251 -14.86051 -14.62237 -14.26915 -14.14975 -13.65331 -13.52536 -13.29483 -13.10518 -13.02489 -12.84571 -12.78759 -12.60318 -12.42213 -12.24212 -12.09840 -12.03649 -11.80916 -11.80333 -11.65487 -10.93845 -10.92426 -10.76927 -10.09866 -9.69421 -9.01849 -7.96729 -5.25651 1.48053 1.50726 1.56914 1.59892 1.63901 2.04049 2.19043 2.56514 3.36926 3.51004 3.69303 3.72925 3.77986 3.82940 4.05454 4.09553 4.24923 4.29926 4.30702 4.41697 4.46977 4.51548 4.62015 4.66360 4.72350 4.73811 4.75863 4.80643 4.83461 4.88730 4.96020 5.11168 5.14814 5.27354 5.29929 5.32322 5.44816 5.48643 5.54022 6.26222 6.41869 6.57539 7.16006 7.26369 7.32822 8.07461 8.31654 9.26380 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.036693 B = 0.002049 C = 0.001977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 762.902412 B =13661.317045 C =14158.333576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.501 3.499 3 O -0.606 6.606 4 N -0.614 5.614 5 C 0.106 3.894 6 C -0.125 4.125 7 C -0.098 4.098 8 C 0.512 3.488 9 O -0.590 6.590 10 N -0.713 5.713 11 C 0.132 3.868 12 C -0.116 4.116 13 C 0.151 3.849 14 N -0.746 5.746 15 C -0.251 4.251 16 H 0.073 0.927 17 C -0.074 4.074 18 N -0.967 5.967 19 Si 0.974 3.026 20 H -0.279 1.279 21 H -0.293 1.293 22 H -0.278 1.278 23 C -0.107 4.107 24 C 0.113 3.887 25 H 0.084 0.916 26 H 0.109 0.891 27 H 0.117 0.883 28 H 0.101 0.899 29 H 0.118 0.882 30 H 0.058 0.942 31 H 0.110 0.890 32 H 0.131 0.869 33 H 0.417 0.583 34 H 0.058 0.942 35 H 0.058 0.942 36 H 0.076 0.924 37 H 0.077 0.923 38 H 0.020 0.980 39 H 0.019 0.981 40 H 0.377 0.623 41 H 0.253 0.747 42 H 0.046 0.954 43 H 0.075 0.925 44 H 0.070 0.930 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.122 21.911 14.088 26.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.292 3.708 3 O -0.488 6.488 4 N -0.347 5.347 5 C -0.015 4.015 6 C -0.164 4.164 7 C -0.119 4.119 8 C 0.299 3.701 9 O -0.471 6.471 10 N -0.366 5.366 11 C 0.007 3.993 12 C -0.154 4.154 13 C 0.024 3.976 14 N -0.389 5.389 15 C -0.383 4.383 16 H 0.091 0.909 17 C -0.267 4.267 18 N -0.617 5.617 19 Si 0.803 3.197 20 H -0.205 1.205 21 H -0.219 1.219 22 H -0.204 1.204 23 C -0.146 4.146 24 C -0.010 4.010 25 H 0.103 0.897 26 H 0.127 0.873 27 H 0.135 0.865 28 H 0.119 0.881 29 H 0.136 0.864 30 H 0.077 0.923 31 H 0.128 0.872 32 H 0.149 0.851 33 H 0.255 0.745 34 H 0.076 0.924 35 H 0.076 0.924 36 H 0.094 0.906 37 H 0.095 0.905 38 H 0.038 0.962 39 H 0.037 0.963 40 H 0.209 0.791 41 H 0.061 0.939 42 H 0.065 0.935 43 H 0.093 0.907 44 H 0.089 0.911 45 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -4.168 22.678 13.367 26.652 hybrid contribution 0.098 -1.078 -0.551 1.215 sum -4.070 21.600 12.816 25.444 Atomic orbital electron populations 1.21976 0.88340 1.05943 1.06402 1.21668 0.92419 0.82505 0.74210 1.90693 1.72184 1.33169 1.52770 1.48361 1.06898 1.07010 1.72411 1.22177 0.98092 0.82035 0.99191 1.22054 0.91969 1.02704 0.99630 1.21356 0.97824 0.94699 0.98011 1.21237 0.80280 0.82192 0.86359 1.90704 1.36500 1.74256 1.45606 1.45920 1.47234 1.12150 1.31265 1.21057 0.98452 0.89546 0.90207 1.21684 1.01182 0.93267 0.99302 1.20688 0.95506 0.84954 0.96497 1.42518 1.53250 1.09442 1.33691 1.19596 1.20484 0.92305 1.05931 0.90884 1.25574 1.00117 1.00033 1.00953 1.69791 1.34334 1.22387 1.35204 0.85206 0.77540 0.78304 0.78672 1.20480 1.21888 1.20438 1.21609 1.00818 0.93911 0.98247 1.21549 0.80029 1.00662 0.98716 0.89691 0.87308 0.86469 0.88068 0.86402 0.92276 0.87211 0.85141 0.74528 0.92409 0.92369 0.90558 0.90456 0.96222 0.96261 0.79122 0.93852 0.93505 0.90680 0.91127 0.89034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.16 8.67 71.24 0.62 -0.54 16 2 C 0.50 8.34 7.81 87.66 0.68 9.02 16 3 O -0.61 -16.68 16.50 -3.04 -0.05 -16.73 16 4 N -0.61 -7.54 2.97 -818.14 -2.43 -9.97 16 5 C 0.11 0.44 6.37 86.51 0.55 0.99 16 6 C -0.13 -0.91 5.28 30.82 0.16 -0.75 16 7 C -0.10 -1.20 2.49 -11.51 -0.03 -1.23 16 8 C 0.51 10.72 7.15 87.66 0.63 11.35 16 9 O -0.59 -18.56 15.98 -3.03 -0.05 -18.61 16 10 N -0.71 -12.94 5.44 -463.06 -2.52 -15.46 16 11 C 0.13 3.23 5.67 86.38 0.49 3.72 16 12 C -0.12 -3.16 5.44 30.59 0.17 -3.00 16 13 C 0.15 5.76 6.26 86.38 0.54 6.30 16 14 N -0.75 -37.06 5.60 -343.45 -1.92 -38.99 16 15 C -0.25 -13.98 9.99 84.03 0.84 -13.14 16 16 H 0.07 3.93 7.83 -2.91 -0.02 3.91 16 17 C -0.07 -4.22 5.50 84.86 0.47 -3.75 16 18 N -0.97 -57.88 13.06 21.65 0.28 -57.60 16 19 Si 0.97 45.56 29.55 68.60 2.03 47.59 16 20 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 21 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 22 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 23 C -0.11 -1.77 4.65 30.66 0.14 -1.63 16 24 C 0.11 1.63 6.43 86.35 0.55 2.19 16 25 H 0.08 0.74 8.12 -2.39 -0.02 0.72 16 26 H 0.11 0.35 7.70 -2.38 -0.02 0.33 16 27 H 0.12 0.15 7.93 -2.39 -0.02 0.13 16 28 H 0.10 0.03 8.14 -2.39 -0.02 0.01 16 29 H 0.12 -0.05 5.94 -2.39 -0.01 -0.06 16 30 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.11 0.31 7.52 -2.39 -0.02 0.29 16 32 H 0.13 0.89 8.14 -2.39 -0.02 0.87 16 33 H 0.42 4.71 7.87 -92.71 -0.73 3.98 16 34 H 0.06 1.55 8.14 -2.38 -0.02 1.53 16 35 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 36 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 37 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 38 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 39 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 40 H 0.38 19.43 7.67 -92.71 -0.71 18.72 16 41 H 0.25 14.65 8.31 -92.70 -0.77 13.88 16 42 H 0.05 1.03 8.13 -2.39 -0.02 1.01 16 43 H 0.07 1.37 8.07 -2.39 -0.02 1.35 16 44 H 0.07 1.40 7.00 -2.39 -0.02 1.38 16 45 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 Total: -1.00 -81.07 365.64 0.70 -80.37 By element: Atomic # 1 Polarization: 20.31 SS G_CDS: -0.45 Total: 19.86 kcal Atomic # 6 Polarization: 3.72 SS G_CDS: 5.82 Total: 9.53 kcal Atomic # 7 Polarization: -115.43 SS G_CDS: -6.59 Total: -122.02 kcal Atomic # 8 Polarization: -35.23 SS G_CDS: -0.10 Total: -35.33 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 2.03 Total: 47.59 kcal Total: -81.07 0.70 -80.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001175688152.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.710 kcal (2) G-P(sol) polarization free energy of solvation -81.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds