Wall clock time and date at job start Tue Mar 31 2020 03:19:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47140 * 2 1 4 4 N 1.46500 * 109.47204 * 120.00127 * 2 1 3 5 5 C 1.34773 * 119.99955 * 274.99858 * 4 2 1 6 6 O 1.21282 * 120.00161 * 0.02562 * 5 4 2 7 7 C 1.50699 * 119.99832 * 180.02562 * 5 4 2 8 8 C 1.53779 * 113.61592 * 279.13446 * 7 5 4 9 9 C 1.53948 * 87.02435 * 220.05000 * 8 7 5 10 10 C 1.53784 * 87.11136 * 25.36281 * 9 8 7 11 11 C 1.50696 * 109.46910 * 240.00295 * 2 1 3 12 12 O 1.21284 * 120.00109 * 239.99936 * 11 2 1 13 13 N 1.34777 * 120.00137 * 60.00151 * 11 2 1 14 14 C 1.46506 * 119.99873 * 180.02562 * 13 11 2 15 15 C 1.53002 * 109.47035 * 179.97438 * 14 13 11 16 16 C 1.52996 * 109.46969 * 179.97438 * 15 14 13 17 17 N 1.46500 * 109.46993 * 179.97438 * 16 15 14 18 18 C 1.36940 * 120.00325 * 180.02562 * 17 16 15 19 19 H 1.07996 * 119.99437 * 359.97438 * 18 17 16 20 20 C 1.38812 * 119.99945 * 180.02562 * 18 17 16 21 21 N 1.31614 * 120.00085 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 119.99423 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.47194 * 90.00214 * 22 20 18 24 24 H 1.48503 * 109.46838 * 209.99716 * 22 20 18 25 25 H 1.48496 * 109.47351 * 329.99374 * 22 20 18 26 26 H 1.09000 * 109.47140 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47045 * 299.99907 * 1 2 3 28 28 H 1.08998 * 109.47624 * 59.99531 * 1 2 3 29 29 H 0.97001 * 119.99882 * 94.99976 * 4 2 1 30 30 H 1.08999 * 112.85224 * 50.33556 * 7 5 4 31 31 H 1.09001 * 113.61395 * 334.57077 * 8 7 5 32 32 H 1.09007 * 113.61141 * 105.47165 * 8 7 5 33 33 H 1.09006 * 113.53936 * 270.81328 * 9 8 7 34 34 H 1.09000 * 113.66953 * 139.93603 * 9 8 7 35 35 H 1.08996 * 113.61468 * 220.09426 * 10 9 8 36 36 H 1.08997 * 113.68983 * 89.19602 * 10 9 8 37 37 H 0.96999 * 120.00047 * 359.97438 * 13 11 2 38 38 H 1.09004 * 109.47073 * 299.99562 * 14 13 11 39 39 H 1.09000 * 109.47212 * 59.99645 * 14 13 11 40 40 H 1.09004 * 109.46930 * 299.99770 * 15 14 13 41 41 H 1.09004 * 109.47059 * 59.99372 * 15 14 13 42 42 H 1.08992 * 109.47534 * 299.99582 * 16 15 14 43 43 H 1.08996 * 109.47134 * 60.00388 * 16 15 14 44 44 H 0.97010 * 119.99909 * 359.97438 * 17 16 15 45 45 H 0.97001 * 119.99453 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 2.1471 -0.0183 2.3571 6 8 1.8582 1.1583 2.4117 7 6 2.6500 -0.7286 3.5874 8 6 1.5676 -1.5452 4.3130 9 6 2.1867 -1.0445 5.6305 10 6 2.7042 0.1666 4.8366 11 6 2.0322 -0.7103 -1.2305 12 8 2.7295 -1.6964 -1.1193 13 7 1.7067 -0.2498 -2.4546 14 6 2.1945 -0.9408 -3.6508 15 6 1.6841 -0.2197 -4.9000 16 6 2.1941 -0.9409 -6.1492 17 7 1.7049 -0.2509 -7.3454 18 6 2.0351 -0.7191 -8.5892 19 1 2.6565 -1.5968 -8.6883 20 6 1.5720 -0.0649 -9.7225 21 7 0.8151 1.0050 -9.6017 22 14 2.0231 -0.7032 -11.4191 23 1 0.9996 -1.6810 -11.8684 24 1 2.0779 0.4309 -12.3762 25 1 3.3502 -1.3669 -11.3616 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 2.2490 -1.6318 1.1525 30 1 3.5701 -1.2849 3.4086 31 1 0.5554 -1.1798 4.1396 32 1 1.6611 -2.6213 4.1667 33 1 2.9798 -1.6883 6.0112 34 1 1.4491 -0.7859 6.3902 35 1 3.7140 0.4704 5.1125 36 1 2.0044 1.0017 4.8061 37 1 1.1487 0.5387 -2.5435 38 1 3.2846 -0.9412 -3.6510 39 1 1.8308 -1.9683 -3.6506 40 1 0.5941 -0.2197 -4.8996 41 1 2.0475 0.8080 -4.9003 42 1 3.2841 -0.9406 -6.1495 43 1 1.8311 -1.9687 -6.1491 44 1 1.1464 0.5373 -7.2563 45 1 0.4912 1.4619 -10.3937 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001177487389.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:19:57 Heat of formation + Delta-G solvation = -57.379806 kcal Electronic energy + Delta-G solvation = -23130.358638 eV Core-core repulsion = 19569.239723 eV Total energy + Delta-G solvation = -3561.118915 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.88648 -39.84086 -37.82448 -36.20365 -35.19130 -34.47520 -32.25627 -31.14575 -29.42081 -27.11414 -26.06823 -25.71307 -24.22601 -22.58632 -21.35739 -21.17977 -20.34920 -19.79337 -18.33635 -17.19845 -16.93082 -16.48331 -15.97860 -15.83803 -15.60795 -15.08170 -14.82589 -14.54551 -14.35845 -13.83596 -13.31149 -13.26544 -13.12788 -13.01918 -12.89704 -12.71690 -12.48227 -12.43309 -11.94496 -11.70819 -11.60869 -11.00838 -10.98401 -10.95505 -10.85068 -10.81950 -10.66471 -10.17161 -10.07131 -9.97547 -9.73452 -9.46976 -9.19945 -8.90493 -6.96279 -5.79585 -3.08708 2.24983 2.36858 2.58345 3.17440 3.42467 3.47619 3.49373 4.05449 4.14222 4.25303 4.36457 4.38888 4.56759 4.67521 4.74212 4.82402 5.04739 5.12799 5.21681 5.23911 5.25764 5.33688 5.41763 5.43987 5.53736 5.54889 5.55976 5.65193 5.75361 5.88617 5.95555 5.99769 6.04967 6.14200 6.27631 6.30913 6.74276 6.78585 7.17423 7.27026 7.67869 7.88730 7.94872 8.39288 9.50503 10.07214 10.41791 11.43349 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.055851 B = 0.001868 C = 0.001841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 501.217949 B =14987.708151 C =15202.979019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.123 3.877 3 H 0.115 0.885 4 N -0.711 5.711 5 C 0.526 3.474 6 O -0.541 6.541 7 C -0.139 4.139 8 C -0.124 4.124 9 C -0.142 4.142 10 C -0.117 4.117 11 C 0.509 3.491 12 O -0.540 6.540 13 N -0.719 5.719 14 C 0.122 3.878 15 C -0.138 4.138 16 C 0.156 3.844 17 N -0.734 5.734 18 C -0.242 4.242 19 H 0.071 0.929 20 C -0.014 4.014 21 N -0.934 5.934 22 Si 0.909 3.091 23 H -0.289 1.289 24 H -0.291 1.291 25 H -0.282 1.282 26 H 0.064 0.936 27 H 0.073 0.927 28 H 0.074 0.926 29 H 0.410 0.590 30 H 0.115 0.885 31 H 0.085 0.915 32 H 0.076 0.924 33 H 0.083 0.917 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.095 0.905 37 H 0.403 0.597 38 H 0.070 0.930 39 H 0.070 0.930 40 H 0.069 0.931 41 H 0.069 0.931 42 H 0.022 0.978 43 H 0.022 0.978 44 H 0.384 0.616 45 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.341 -3.455 30.224 30.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.014 3.986 3 H 0.132 0.868 4 N -0.365 5.365 5 C 0.313 3.687 6 O -0.417 6.417 7 C -0.160 4.160 8 C -0.162 4.162 9 C -0.180 4.180 10 C -0.155 4.155 11 C 0.294 3.706 12 O -0.417 6.417 13 N -0.371 5.371 14 C -0.001 4.001 15 C -0.176 4.176 16 C 0.028 3.972 17 N -0.378 5.378 18 C -0.373 4.373 19 H 0.089 0.911 20 C -0.210 4.210 21 N -0.582 5.582 22 Si 0.740 3.260 23 H -0.217 1.217 24 H -0.217 1.217 25 H -0.207 1.207 26 H 0.083 0.917 27 H 0.092 0.908 28 H 0.093 0.907 29 H 0.247 0.753 30 H 0.133 0.867 31 H 0.104 0.896 32 H 0.095 0.905 33 H 0.102 0.898 34 H 0.091 0.909 35 H 0.091 0.909 36 H 0.113 0.887 37 H 0.238 0.762 38 H 0.088 0.912 39 H 0.089 0.911 40 H 0.088 0.912 41 H 0.088 0.912 42 H 0.040 0.960 43 H 0.039 0.961 44 H 0.217 0.783 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 0.727 -3.423 30.171 30.373 hybrid contribution -0.087 -0.122 -1.243 1.252 sum 0.640 -3.545 28.928 29.152 Atomic orbital electron populations 1.22134 0.92667 1.03243 1.03749 1.20776 0.95808 0.98197 0.83792 0.86780 1.45805 1.67394 1.14902 1.08385 1.20569 0.77013 0.87046 0.84057 1.90694 1.50177 1.15947 1.84922 1.22818 1.01131 0.99772 0.92286 1.22866 0.97874 0.99820 0.95641 1.22864 1.00718 0.97888 0.96492 1.22809 1.02661 0.97181 0.92874 1.20532 0.80403 0.84783 0.84885 1.90702 1.37981 1.26367 1.86650 1.46018 1.53281 1.32156 1.05623 1.21416 0.99563 0.96447 0.82708 1.21956 1.01578 1.00361 0.93754 1.20513 0.96486 0.94732 0.85439 1.42334 1.61485 1.33511 1.00462 1.19247 1.25781 1.08752 0.83492 0.91082 1.24755 1.00438 0.97886 0.97933 1.69658 1.39303 1.20853 1.28433 0.86161 0.77970 0.77630 0.84262 1.21676 1.21731 1.20720 0.91661 0.90793 0.90719 0.75271 0.86709 0.89632 0.90496 0.89813 0.90895 0.90937 0.88664 0.76187 0.91177 0.91149 0.91184 0.91189 0.96048 0.96062 0.78286 0.93486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.23 9.38 37.16 0.35 -0.88 16 2 C 0.12 1.15 2.98 -69.09 -0.21 0.94 16 3 H 0.11 1.11 7.58 -51.93 -0.39 0.72 16 4 N -0.71 -6.50 4.95 -54.94 -0.27 -6.77 16 5 C 0.53 5.14 7.32 -10.99 -0.08 5.06 16 6 O -0.54 -7.02 15.57 5.56 0.09 -6.93 16 7 C -0.14 -0.95 4.14 -90.96 -0.38 -1.33 16 8 C -0.12 -0.68 7.64 -25.83 -0.20 -0.87 16 9 C -0.14 -0.71 8.09 -25.83 -0.21 -0.91 16 10 C -0.12 -0.79 7.40 -25.91 -0.19 -0.98 16 11 C 0.51 5.80 7.22 -10.99 -0.08 5.72 16 12 O -0.54 -7.86 15.84 5.55 0.09 -7.77 16 13 N -0.72 -7.58 5.45 -60.29 -0.33 -7.91 16 14 C 0.12 1.56 5.67 -4.04 -0.02 1.53 16 15 C -0.14 -2.02 5.44 -26.73 -0.15 -2.17 16 16 C 0.16 3.05 6.26 -4.04 -0.03 3.03 16 17 N -0.73 -18.47 5.60 -59.92 -0.34 -18.80 16 18 C -0.24 -6.79 9.99 -15.06 -0.15 -6.94 16 19 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 20 C -0.01 -0.41 5.50 -17.43 -0.10 -0.50 16 21 N -0.93 -28.15 13.06 55.49 0.72 -27.43 16 22 Si 0.91 22.39 29.55 -169.99 -5.02 17.37 16 23 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 24 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 25 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 26 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.07 0.47 7.56 -51.93 -0.39 0.08 16 29 H 0.41 3.48 7.79 -40.82 -0.32 3.16 16 30 H 0.11 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.09 0.52 8.09 -51.93 -0.42 0.10 16 32 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 35 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.09 0.78 7.45 -51.93 -0.39 0.40 16 37 H 0.40 3.32 7.89 -40.82 -0.32 3.00 16 38 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 39 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 40 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 41 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 42 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 43 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 44 H 0.38 10.04 7.67 -40.82 -0.31 9.73 16 45 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 374.41 15.07 5.64 5.64 Total: -1.00 -34.08 374.41 -8.44 -42.52 By element: Atomic # 1 Polarization: 15.99 SS G_CDS: -7.59 Total: 8.40 kcal Atomic # 6 Polarization: 3.12 SS G_CDS: -1.43 Total: 1.69 kcal Atomic # 7 Polarization: -60.70 SS G_CDS: -0.21 Total: -60.91 kcal Atomic # 8 Polarization: -14.88 SS G_CDS: 0.17 Total: -14.70 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -5.02 Total: 17.37 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -34.08 -8.44 -42.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001177487389.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.863 kcal (2) G-P(sol) polarization free energy of solvation -34.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds