Wall clock time and date at job start Tue Mar 31 2020 03:19:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47140 * 2 1 4 4 N 1.46500 * 109.47204 * 120.00127 * 2 1 3 5 5 C 1.34773 * 119.99955 * 274.99858 * 4 2 1 6 6 O 1.21282 * 120.00161 * 0.02562 * 5 4 2 7 7 C 1.50699 * 119.99832 * 180.02562 * 5 4 2 8 8 C 1.53779 * 113.61592 * 279.13446 * 7 5 4 9 9 C 1.53948 * 87.02435 * 220.05000 * 8 7 5 10 10 C 1.53784 * 87.11136 * 25.36281 * 9 8 7 11 11 C 1.50696 * 109.46910 * 240.00295 * 2 1 3 12 12 O 1.21284 * 120.00109 * 239.99936 * 11 2 1 13 13 N 1.34777 * 120.00137 * 60.00151 * 11 2 1 14 14 C 1.46506 * 119.99873 * 180.02562 * 13 11 2 15 15 C 1.53002 * 109.47035 * 179.97438 * 14 13 11 16 16 C 1.52996 * 109.46969 * 179.97438 * 15 14 13 17 17 N 1.46500 * 109.46993 * 179.97438 * 16 15 14 18 18 C 1.36940 * 120.00325 * 180.02562 * 17 16 15 19 19 H 1.07996 * 119.99437 * 359.97438 * 18 17 16 20 20 C 1.38812 * 119.99945 * 180.02562 * 18 17 16 21 21 N 1.31614 * 120.00085 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 119.99423 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.47194 * 90.00214 * 22 20 18 24 24 H 1.48503 * 109.46838 * 209.99716 * 22 20 18 25 25 H 1.48496 * 109.47351 * 329.99374 * 22 20 18 26 26 H 1.09000 * 109.47140 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47045 * 299.99907 * 1 2 3 28 28 H 1.08998 * 109.47624 * 59.99531 * 1 2 3 29 29 H 0.97001 * 119.99882 * 94.99976 * 4 2 1 30 30 H 1.08999 * 112.85224 * 50.33556 * 7 5 4 31 31 H 1.09001 * 113.61395 * 334.57077 * 8 7 5 32 32 H 1.09007 * 113.61141 * 105.47165 * 8 7 5 33 33 H 1.09006 * 113.53936 * 270.81328 * 9 8 7 34 34 H 1.09000 * 113.66953 * 139.93603 * 9 8 7 35 35 H 1.08996 * 113.61468 * 220.09426 * 10 9 8 36 36 H 1.08997 * 113.68983 * 89.19602 * 10 9 8 37 37 H 0.96999 * 120.00047 * 359.97438 * 13 11 2 38 38 H 1.09004 * 109.47073 * 299.99562 * 14 13 11 39 39 H 1.09000 * 109.47212 * 59.99645 * 14 13 11 40 40 H 1.09004 * 109.46930 * 299.99770 * 15 14 13 41 41 H 1.09004 * 109.47059 * 59.99372 * 15 14 13 42 42 H 1.08992 * 109.47534 * 299.99582 * 16 15 14 43 43 H 1.08996 * 109.47134 * 60.00388 * 16 15 14 44 44 H 0.97010 * 119.99909 * 359.97438 * 17 16 15 45 45 H 0.97001 * 119.99453 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 2.1471 -0.0183 2.3571 6 8 1.8582 1.1583 2.4117 7 6 2.6500 -0.7286 3.5874 8 6 1.5676 -1.5452 4.3130 9 6 2.1867 -1.0445 5.6305 10 6 2.7042 0.1666 4.8366 11 6 2.0322 -0.7103 -1.2305 12 8 2.7295 -1.6964 -1.1193 13 7 1.7067 -0.2498 -2.4546 14 6 2.1945 -0.9408 -3.6508 15 6 1.6841 -0.2197 -4.9000 16 6 2.1941 -0.9409 -6.1492 17 7 1.7049 -0.2509 -7.3454 18 6 2.0351 -0.7191 -8.5892 19 1 2.6565 -1.5968 -8.6883 20 6 1.5720 -0.0649 -9.7225 21 7 0.8151 1.0050 -9.6017 22 14 2.0231 -0.7032 -11.4191 23 1 0.9996 -1.6810 -11.8684 24 1 2.0779 0.4309 -12.3762 25 1 3.3502 -1.3669 -11.3616 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 2.2490 -1.6318 1.1525 30 1 3.5701 -1.2849 3.4086 31 1 0.5554 -1.1798 4.1396 32 1 1.6611 -2.6213 4.1667 33 1 2.9798 -1.6883 6.0112 34 1 1.4491 -0.7859 6.3902 35 1 3.7140 0.4704 5.1125 36 1 2.0044 1.0017 4.8061 37 1 1.1487 0.5387 -2.5435 38 1 3.2846 -0.9412 -3.6510 39 1 1.8308 -1.9683 -3.6506 40 1 0.5941 -0.2197 -4.8996 41 1 2.0475 0.8080 -4.9003 42 1 3.2841 -0.9406 -6.1495 43 1 1.8311 -1.9687 -6.1491 44 1 1.1464 0.5373 -7.2563 45 1 0.4912 1.4619 -10.3937 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001177487389.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:19:56 Heat of formation + Delta-G solvation = -82.168187 kcal Electronic energy + Delta-G solvation = -23131.433543 eV Core-core repulsion = 19569.239723 eV Total energy + Delta-G solvation = -3562.193820 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.66624 -40.67792 -38.45951 -37.55625 -36.10393 -35.93512 -33.85430 -32.24555 -30.89298 -27.67449 -27.17173 -26.53084 -25.40788 -24.09112 -22.60188 -22.01483 -21.26619 -20.39800 -19.29220 -18.90393 -17.87517 -17.37497 -16.98734 -16.76590 -16.42092 -16.35933 -15.95298 -15.50067 -15.43261 -15.28541 -14.91892 -14.58491 -14.07829 -13.82134 -13.58028 -13.40504 -13.36189 -13.30281 -13.01149 -12.82442 -12.67610 -12.59285 -12.42885 -12.14950 -12.07689 -12.05203 -11.79985 -11.43536 -11.30058 -11.06026 -10.94801 -10.75508 -10.28846 -10.16490 -9.02020 -7.97037 -5.26096 1.41382 1.47835 1.49357 1.52543 1.57952 1.77753 2.35384 2.56182 3.37069 3.47073 3.54408 3.65652 3.75030 3.79509 3.92536 3.98594 4.03427 4.09795 4.23166 4.28089 4.44183 4.61538 4.69704 4.72079 4.72888 4.75953 4.80280 4.87080 4.87652 5.04318 5.10339 5.13080 5.18435 5.25017 5.28149 5.31627 5.35562 5.48785 5.52997 6.25688 6.39146 6.45030 7.04521 7.15420 7.32330 8.07421 8.30704 9.26362 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.055851 B = 0.001868 C = 0.001841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 501.217949 B =14987.708151 C =15202.979019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.127 3.873 3 H 0.112 0.888 4 N -0.708 5.708 5 C 0.524 3.476 6 O -0.578 6.578 7 C -0.140 4.140 8 C -0.120 4.120 9 C -0.132 4.132 10 C -0.125 4.125 11 C 0.513 3.487 12 O -0.571 6.571 13 N -0.710 5.710 14 C 0.134 3.866 15 C -0.120 4.120 16 C 0.151 3.849 17 N -0.747 5.747 18 C -0.251 4.251 19 H 0.075 0.925 20 C -0.075 4.075 21 N -0.968 5.968 22 Si 0.975 3.025 23 H -0.286 1.286 24 H -0.294 1.294 25 H -0.270 1.270 26 H 0.067 0.933 27 H 0.068 0.932 28 H 0.090 0.910 29 H 0.415 0.585 30 H 0.132 0.868 31 H 0.076 0.924 32 H 0.093 0.907 33 H 0.099 0.901 34 H 0.076 0.924 35 H 0.077 0.923 36 H 0.074 0.926 37 H 0.417 0.583 38 H 0.063 0.937 39 H 0.068 0.932 40 H 0.076 0.924 41 H 0.073 0.927 42 H 0.021 0.979 43 H 0.023 0.977 44 H 0.376 0.624 45 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.568 -4.533 31.078 31.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.018 3.982 3 H 0.129 0.871 4 N -0.361 5.361 5 C 0.312 3.688 6 O -0.457 6.457 7 C -0.161 4.161 8 C -0.158 4.158 9 C -0.170 4.170 10 C -0.163 4.163 11 C 0.299 3.701 12 O -0.451 6.451 13 N -0.362 5.362 14 C 0.010 3.990 15 C -0.158 4.158 16 C 0.025 3.975 17 N -0.390 5.390 18 C -0.382 4.382 19 H 0.093 0.907 20 C -0.267 4.267 21 N -0.618 5.618 22 Si 0.803 3.197 23 H -0.213 1.213 24 H -0.221 1.221 25 H -0.195 1.195 26 H 0.086 0.914 27 H 0.087 0.913 28 H 0.109 0.891 29 H 0.252 0.748 30 H 0.150 0.850 31 H 0.095 0.905 32 H 0.111 0.889 33 H 0.118 0.882 34 H 0.095 0.905 35 H 0.095 0.905 36 H 0.093 0.907 37 H 0.254 0.746 38 H 0.082 0.918 39 H 0.086 0.914 40 H 0.095 0.905 41 H 0.091 0.909 42 H 0.039 0.961 43 H 0.041 0.959 44 H 0.208 0.792 45 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 0.959 -4.527 31.050 31.393 hybrid contribution -0.129 0.197 -1.463 1.482 sum 0.829 -4.330 29.587 29.914 Atomic orbital electron populations 1.22101 0.91173 1.03575 1.04301 1.20769 0.96849 0.97628 0.82948 0.87052 1.45844 1.66990 1.15061 1.08218 1.21107 0.76246 0.86676 0.84770 1.90675 1.51939 1.17605 1.85517 1.22959 1.02284 1.00026 0.90811 1.22865 0.96939 1.00498 0.95466 1.22856 1.01051 0.96858 0.96193 1.22816 1.02539 0.97324 0.93571 1.20810 0.79684 0.84272 0.85364 1.90690 1.39446 1.27865 1.87093 1.45858 1.53125 1.32355 1.04825 1.21138 0.99083 0.96196 0.82620 1.21715 1.01791 1.00001 0.92297 1.20685 0.96385 0.94900 0.85575 1.42544 1.61488 1.33599 1.01372 1.19658 1.25076 1.08585 0.84923 0.90672 1.25580 1.01017 0.98448 1.01654 1.69805 1.40761 1.22205 1.29072 0.85125 0.78082 0.76869 0.79589 1.21284 1.22069 1.19518 0.91392 0.91327 0.89097 0.74759 0.85008 0.90490 0.88879 0.88226 0.90481 0.90468 0.90714 0.74621 0.91824 0.91375 0.90529 0.90857 0.96065 0.95857 0.79241 0.93921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.15 9.38 71.98 0.68 -1.47 16 2 C 0.13 2.24 2.98 44.24 0.13 2.38 16 3 H 0.11 2.09 7.58 -2.39 -0.02 2.07 16 4 N -0.71 -12.38 4.95 -446.11 -2.21 -14.59 16 5 C 0.52 10.01 7.32 87.66 0.64 10.65 16 6 O -0.58 -15.16 15.57 -3.04 -0.05 -15.21 16 7 C -0.14 -1.76 4.14 -11.01 -0.05 -1.81 16 8 C -0.12 -1.12 7.64 31.18 0.24 -0.88 16 9 C -0.13 -1.08 8.09 31.18 0.25 -0.83 16 10 C -0.12 -1.59 7.40 31.12 0.23 -1.36 16 11 C 0.51 11.04 7.22 87.66 0.63 11.67 16 12 O -0.57 -16.07 15.84 -3.04 -0.05 -16.12 16 13 N -0.71 -13.76 5.45 -463.04 -2.52 -16.28 16 14 C 0.13 3.21 5.67 86.38 0.49 3.70 16 15 C -0.12 -3.33 5.44 30.59 0.17 -3.16 16 16 C 0.15 5.78 6.26 86.38 0.54 6.32 16 17 N -0.75 -37.42 5.60 -343.47 -1.92 -39.34 16 18 C -0.25 -14.00 9.99 84.03 0.84 -13.16 16 19 H 0.08 4.04 7.83 -2.91 -0.02 4.02 16 20 C -0.07 -4.27 5.50 84.86 0.47 -3.80 16 21 N -0.97 -58.69 13.06 21.65 0.28 -58.40 16 22 Si 0.97 45.87 29.55 68.60 2.03 47.90 16 23 H -0.29 -13.19 7.11 99.48 0.71 -12.48 16 24 H -0.29 -13.89 7.11 99.48 0.71 -13.18 16 25 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 26 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 27 H 0.07 1.07 8.14 -2.39 -0.02 1.06 16 28 H 0.09 0.97 7.56 -2.39 -0.02 0.95 16 29 H 0.41 6.61 7.79 -92.71 -0.72 5.89 16 30 H 0.13 1.21 8.14 -2.39 -0.02 1.19 16 31 H 0.08 0.86 8.09 -2.39 -0.02 0.84 16 32 H 0.09 0.58 8.14 -2.38 -0.02 0.56 16 33 H 0.10 0.53 8.14 -2.38 -0.02 0.51 16 34 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 35 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 36 H 0.07 1.27 7.45 -2.39 -0.02 1.25 16 37 H 0.42 5.97 7.89 -92.71 -0.73 5.24 16 38 H 0.06 1.64 8.14 -2.38 -0.02 1.62 16 39 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 40 H 0.08 2.06 8.14 -2.38 -0.02 2.04 16 41 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 42 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 43 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 44 H 0.38 19.71 7.67 -92.70 -0.71 19.00 16 45 H 0.25 14.79 8.31 -92.71 -0.77 14.02 16 Total: -1.00 -72.55 374.41 -0.34 -72.90 By element: Atomic # 1 Polarization: 32.08 SS G_CDS: -1.16 Total: 30.91 kcal Atomic # 6 Polarization: 2.97 SS G_CDS: 5.26 Total: 8.23 kcal Atomic # 7 Polarization: -122.24 SS G_CDS: -6.37 Total: -128.61 kcal Atomic # 8 Polarization: -31.23 SS G_CDS: -0.10 Total: -31.33 kcal Atomic # 14 Polarization: 45.87 SS G_CDS: 2.03 Total: 47.90 kcal Total: -72.55 -0.34 -72.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001177487389.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.273 kcal (2) G-P(sol) polarization free energy of solvation -72.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.895 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds