Wall clock time and date at job start Tue Mar 31 2020 03:53:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21278 * 120.00380 * 2 1 4 4 N 1.34780 * 119.99678 * 180.02562 * 2 1 3 5 5 C 1.47079 * 120.88015 * 354.91238 * 4 2 1 6 6 C 1.53704 * 108.27129 * 128.75840 * 5 4 2 7 7 N 1.46898 * 109.26033 * 54.08171 * 6 5 4 8 8 C 1.46897 * 111.00050 * 172.60675 * 7 6 5 9 9 C 1.50706 * 109.47057 * 294.30224 * 8 7 6 10 10 O 1.21283 * 119.99852 * 359.97438 * 9 8 7 11 11 N 1.34770 * 119.99970 * 180.02562 * 9 8 7 12 12 C 1.46501 * 120.00048 * 179.97438 * 11 9 8 13 13 C 1.53003 * 109.47061 * 179.97438 * 12 11 9 14 14 C 1.52997 * 109.46955 * 179.97438 * 13 12 11 15 15 C 1.50708 * 109.47100 * 179.97438 * 14 13 12 16 16 H 1.07997 * 119.99881 * 0.02562 * 15 14 13 17 17 C 1.37877 * 119.99880 * 179.97438 * 15 14 13 18 18 N 1.31518 * 119.99489 * 180.02562 * 17 15 14 19 19 Si 1.86795 * 120.00258 * 0.02562 * 17 15 14 20 20 H 1.48501 * 109.47347 * 89.99634 * 19 17 15 21 21 H 1.48493 * 109.47259 * 209.99705 * 19 17 15 22 22 H 1.48503 * 109.46939 * 329.99786 * 19 17 15 23 23 C 1.46897 * 111.26852 * 296.75602 * 7 6 5 24 24 C 1.47078 * 120.88088 * 175.19270 * 4 2 1 25 25 H 1.08998 * 109.47444 * 185.39944 * 1 2 3 26 26 H 1.08994 * 109.47002 * 305.40243 * 1 2 3 27 27 H 1.09005 * 109.46746 * 65.39987 * 1 2 3 28 28 H 1.09005 * 109.62692 * 248.52229 * 5 4 2 29 29 H 1.08996 * 109.63343 * 9.10503 * 5 4 2 30 30 H 1.09005 * 109.64604 * 294.07541 * 6 5 4 31 31 H 1.09006 * 109.41857 * 173.94994 * 6 5 4 32 32 H 1.08990 * 109.47388 * 54.30024 * 8 7 6 33 33 H 1.08996 * 109.47111 * 174.30408 * 8 7 6 34 34 H 0.97004 * 119.99928 * 359.97438 * 11 9 8 35 35 H 1.09003 * 109.47038 * 299.99605 * 12 11 9 36 36 H 1.08996 * 109.46971 * 59.99774 * 12 11 9 37 37 H 1.09003 * 109.47019 * 299.99796 * 13 12 11 38 38 H 1.09005 * 109.47106 * 59.99913 * 13 12 11 39 39 H 1.08992 * 109.47732 * 299.99926 * 14 13 12 40 40 H 1.09005 * 109.47146 * 60.00108 * 14 13 12 41 41 H 0.97003 * 119.99423 * 179.97438 * 18 17 15 42 42 H 1.08998 * 109.49490 * 303.14379 * 23 7 6 43 43 H 1.08998 * 109.49314 * 183.05925 * 23 7 6 44 44 H 1.09003 * 109.62618 * 350.90052 * 24 4 2 45 45 H 1.09004 * 109.62770 * 111.47588 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1809 -1.1673 -0.0005 5 6 1.4694 -2.4497 0.1108 6 6 1.9454 -3.3654 -1.0281 7 7 3.4107 -3.4634 -0.9908 8 6 3.8959 -4.4647 -1.9498 9 6 3.4269 -5.8333 -1.5277 10 8 2.7549 -5.9618 -0.5262 11 7 3.7549 -6.9144 -2.2624 12 6 3.2994 -8.2449 -1.8517 13 6 3.8048 -9.2878 -2.8507 14 6 3.3296 -10.6773 -2.4214 15 6 3.8268 -11.7046 -3.4057 16 1 4.4225 -11.3971 -4.2524 17 6 3.5221 -13.0370 -3.2246 18 7 3.9564 -13.9334 -4.0833 19 14 2.4923 -13.5689 -1.7597 20 1 1.0546 -13.5466 -2.1309 21 1 2.8782 -14.9450 -1.3569 22 1 2.7255 -12.6377 -0.6266 23 6 4.0383 -2.1571 -1.2308 24 6 3.6476 -1.1921 -0.1063 25 1 -0.3634 -1.0231 0.0967 26 1 -0.3633 0.5953 0.8376 27 1 -0.3633 0.4278 -0.9344 28 1 1.6933 -2.9103 1.0731 29 1 0.3960 -2.2818 0.0231 30 1 1.6329 -2.9509 -1.9866 31 1 1.5112 -4.3572 -0.9014 32 1 3.5058 -4.2369 -2.9417 33 1 4.9855 -4.4458 -1.9748 34 1 4.2927 -6.8116 -3.0632 35 1 3.6898 -8.4724 -0.8597 36 1 2.2099 -8.2642 -1.8267 37 1 3.4141 -9.0601 -3.8425 38 1 4.8944 -9.2686 -2.8761 39 1 3.7205 -10.9048 -1.4298 40 1 2.2400 -10.6968 -2.3957 41 1 3.7423 -14.8709 -3.9557 42 1 3.6967 -1.7594 -2.1864 43 1 5.1220 -2.2725 -1.2509 44 1 4.0150 -0.1923 -0.3376 45 1 4.0769 -1.5342 0.8354 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001179035309.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:53:32 Heat of formation + Delta-G solvation = -89.392874 kcal Electronic energy + Delta-G solvation = -23664.272286 eV Core-core repulsion = 20101.765180 eV Total energy + Delta-G solvation = -3562.507105 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.37819 -40.61389 -38.75941 -36.93438 -35.62000 -35.10783 -33.30815 -32.65867 -30.91583 -29.93318 -28.58845 -26.19531 -24.75815 -24.26436 -22.34954 -22.20811 -21.15351 -19.95280 -18.97346 -18.30050 -17.96858 -17.02323 -16.98378 -16.79098 -16.54923 -16.24438 -16.14448 -15.69402 -15.40713 -15.36246 -14.76435 -14.60981 -14.56291 -14.20300 -13.79934 -13.71638 -13.55377 -13.07368 -12.92554 -12.88565 -12.71733 -12.66435 -12.32232 -12.22990 -12.14914 -11.86455 -11.76202 -11.57121 -11.31743 -10.88431 -10.75727 -10.74781 -10.02684 -9.83534 -9.30055 -8.28834 -6.32657 1.37389 1.39430 1.50961 1.54723 1.70730 1.93974 2.14686 2.36911 2.93317 3.06985 3.59007 3.78815 3.86651 3.98328 4.07973 4.14453 4.18344 4.22273 4.25270 4.38727 4.43143 4.52351 4.53371 4.58846 4.60877 4.73717 4.78395 4.85423 4.91897 4.95966 5.00778 5.05652 5.13790 5.39681 5.44498 5.55299 5.57760 5.66257 5.81504 5.99521 6.28113 6.37404 6.66703 6.75965 7.08638 7.32180 7.34687 8.87464 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.039801 B = 0.002161 C = 0.002092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 703.331015 B =12956.584472 C =13381.814932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.505 3.495 3 O -0.600 6.600 4 N -0.615 5.615 5 C 0.112 3.888 6 C 0.038 3.962 7 N -0.538 5.538 8 C 0.043 3.957 9 C 0.507 3.493 10 O -0.567 6.567 11 N -0.720 5.720 12 C 0.130 3.870 13 C -0.100 4.100 14 C -0.013 4.013 15 C -0.530 4.530 16 H 0.037 0.963 17 C 0.002 3.998 18 N -0.950 5.950 19 Si 0.948 3.052 20 H -0.267 1.267 21 H -0.286 1.286 22 H -0.247 1.247 23 C 0.051 3.949 24 C 0.113 3.887 25 H 0.105 0.895 26 H 0.102 0.898 27 H 0.105 0.895 28 H 0.074 0.926 29 H 0.122 0.878 30 H 0.042 0.958 31 H 0.090 0.910 32 H 0.086 0.914 33 H 0.130 0.870 34 H 0.414 0.586 35 H 0.054 0.946 36 H 0.057 0.943 37 H 0.064 0.936 38 H 0.063 0.937 39 H 0.020 0.980 40 H 0.020 0.980 41 H 0.266 0.734 42 H 0.042 0.958 43 H 0.108 0.892 44 H 0.086 0.914 45 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.924 27.647 6.343 28.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.296 3.704 3 O -0.482 6.482 4 N -0.348 5.348 5 C -0.010 4.010 6 C -0.091 4.091 7 N -0.264 5.264 8 C -0.087 4.087 9 C 0.294 3.706 10 O -0.446 6.446 11 N -0.373 5.373 12 C 0.006 3.994 13 C -0.138 4.138 14 C -0.051 4.051 15 C -0.568 4.568 16 H 0.056 0.944 17 C -0.194 4.194 18 N -0.591 5.591 19 Si 0.772 3.228 20 H -0.192 1.192 21 H -0.212 1.212 22 H -0.171 1.171 23 C -0.077 4.077 24 C -0.010 4.010 25 H 0.123 0.877 26 H 0.120 0.880 27 H 0.123 0.877 28 H 0.092 0.908 29 H 0.140 0.860 30 H 0.060 0.940 31 H 0.108 0.892 32 H 0.104 0.896 33 H 0.148 0.852 34 H 0.251 0.749 35 H 0.072 0.928 36 H 0.076 0.924 37 H 0.083 0.917 38 H 0.082 0.918 39 H 0.038 0.962 40 H 0.038 0.962 41 H 0.074 0.926 42 H 0.060 0.940 43 H 0.126 0.874 44 H 0.104 0.896 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -4.958 27.767 7.487 29.183 hybrid contribution -0.070 -0.713 -0.868 1.125 sum -5.027 27.055 6.619 28.302 Atomic orbital electron populations 1.22060 0.88689 1.06323 1.06185 1.21553 0.92270 0.82343 0.74201 1.90681 1.71942 1.32685 1.52881 1.48428 1.07742 1.06699 1.71897 1.22189 0.98213 0.81506 0.99127 1.22690 0.87724 1.01097 0.97559 1.61523 1.06963 1.06897 1.50971 1.21986 1.03472 0.87936 0.95316 1.21067 0.79515 0.87048 0.82932 1.90655 1.39986 1.86889 1.27042 1.45995 1.55285 1.06294 1.29692 1.21226 0.98919 0.81312 0.97933 1.21477 1.00815 0.93339 0.98209 1.19474 0.96406 0.93207 0.95998 1.21481 1.32875 0.92201 1.10263 0.94443 1.26010 0.97141 0.96911 0.99368 1.70065 1.48072 1.02251 1.38729 0.85687 0.79181 0.77695 0.80278 1.19203 1.21173 1.17074 1.22484 1.01011 0.87465 0.96761 1.21691 0.79957 0.99962 0.99392 0.87695 0.87987 0.87674 0.90816 0.86045 0.93988 0.89211 0.89631 0.85243 0.74941 0.92757 0.92446 0.91719 0.91833 0.96194 0.96204 0.92557 0.93968 0.87381 0.89551 0.90874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.60 10.12 71.24 0.72 -0.88 16 2 C 0.51 9.26 7.81 87.66 0.68 9.94 16 3 O -0.60 -16.37 16.58 -3.02 -0.05 -16.42 16 4 N -0.61 -9.94 3.00 -817.02 -2.45 -12.39 16 5 C 0.11 1.48 6.55 86.51 0.57 2.05 16 6 C 0.04 0.60 5.27 86.54 0.46 1.05 16 7 N -0.54 -8.73 4.37 -898.88 -3.93 -12.66 16 8 C 0.04 0.61 5.45 85.56 0.47 1.08 16 9 C 0.51 11.37 7.49 87.66 0.66 12.02 16 10 O -0.57 -17.32 14.33 -3.04 -0.04 -17.36 16 11 N -0.72 -15.69 5.56 -463.05 -2.57 -18.26 16 12 C 0.13 3.77 5.67 86.38 0.49 4.26 16 13 C -0.10 -3.42 5.27 30.59 0.16 -3.26 16 14 C -0.01 -0.57 4.04 29.85 0.12 -0.45 16 15 C -0.53 -29.54 9.66 25.60 0.25 -29.29 16 16 H 0.04 2.27 7.99 -2.91 -0.02 2.25 16 17 C 0.00 0.14 5.47 84.65 0.46 0.61 16 18 N -0.95 -58.76 13.96 21.45 0.30 -58.46 16 19 Si 0.95 43.67 27.47 68.60 1.88 45.55 16 20 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 21 H -0.29 -13.00 7.11 99.48 0.71 -12.29 16 22 H -0.25 -10.61 6.54 99.48 0.65 -9.96 16 23 C 0.05 0.65 5.62 86.38 0.49 1.13 16 24 C 0.11 1.80 6.58 86.35 0.57 2.37 16 25 H 0.10 0.48 5.14 -2.39 -0.01 0.47 16 26 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 27 H 0.10 0.79 8.14 -2.38 -0.02 0.77 16 28 H 0.07 1.15 8.14 -2.38 -0.02 1.13 16 29 H 0.12 0.91 5.11 -2.39 -0.01 0.90 16 30 H 0.04 0.59 8.14 -2.38 -0.02 0.57 16 31 H 0.09 1.83 5.77 -2.38 -0.01 1.82 16 32 H 0.09 0.88 8.12 -2.39 -0.02 0.86 16 33 H 0.13 1.23 7.97 -2.39 -0.02 1.22 16 34 H 0.41 6.58 8.47 -92.71 -0.79 5.80 16 35 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 36 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 37 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 38 H 0.06 2.12 8.14 -2.38 -0.02 2.10 16 39 H 0.02 0.88 7.20 -2.39 -0.02 0.86 16 40 H 0.02 0.85 7.57 -2.38 -0.02 0.84 16 41 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 42 H 0.04 0.53 8.14 -2.39 -0.02 0.51 16 43 H 0.11 0.99 7.99 -2.39 -0.02 0.97 16 44 H 0.09 1.54 7.10 -2.39 -0.02 1.53 16 45 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 Total: -1.00 -77.41 359.18 -0.63 -78.05 By element: Atomic # 1 Polarization: 11.17 SS G_CDS: 0.14 Total: 11.31 kcal Atomic # 6 Polarization: -5.45 SS G_CDS: 6.09 Total: 0.63 kcal Atomic # 7 Polarization: -93.11 SS G_CDS: -8.65 Total: -101.76 kcal Atomic # 8 Polarization: -33.69 SS G_CDS: -0.09 Total: -33.78 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 1.88 Total: 45.55 kcal Total: -77.41 -0.63 -78.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001179035309.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.344 kcal (2) G-P(sol) polarization free energy of solvation -77.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds