Wall clock time and date at job start Tue Mar 31 2020 03:40:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46506 * 109.47289 * 2 1 4 4 C 1.46498 * 119.99755 * 89.99723 * 3 2 1 5 5 C 1.50694 * 109.47360 * 90.00702 * 4 3 2 6 6 H 1.08009 * 119.99986 * 359.97438 * 5 4 3 7 7 C 1.37876 * 120.00318 * 179.97438 * 5 4 3 8 8 N 1.31517 * 120.00228 * 359.97438 * 7 5 4 9 9 Si 1.86805 * 120.00152 * 179.97438 * 7 5 4 10 10 H 1.48508 * 109.46951 * 0.02562 * 9 7 5 11 11 H 1.48496 * 109.47125 * 119.99925 * 9 7 5 12 12 H 1.48500 * 109.47285 * 240.00037 * 9 7 5 13 13 C 1.34774 * 119.99868 * 269.99911 * 3 2 1 14 14 O 1.21283 * 119.99927 * 179.97438 * 13 3 2 15 15 C 1.50692 * 120.00104 * 359.97438 * 13 3 2 16 16 N 1.46904 * 109.47570 * 179.97438 * 15 13 3 17 17 C 1.46891 * 111.00545 * 180.02562 * 16 15 13 18 18 H 1.09005 * 110.88483 * 322.57060 * 17 16 15 19 19 C 1.55160 * 111.00516 * 198.65100 * 17 16 15 20 20 C 1.54322 * 102.93901 * 206.42145 * 19 17 16 21 21 N 1.47019 * 107.27444 * 22.19077 * 20 19 17 22 22 C 1.34781 * 125.64483 * 181.02127 * 21 20 19 23 23 C 1.50689 * 120.00499 * 0.04370 * 22 21 20 24 24 O 1.21287 * 119.99403 * 180.02562 * 22 21 20 25 25 C 1.47420 * 108.70373 * 1.06191 * 21 20 19 26 26 H 1.09002 * 109.47153 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.46832 * 60.00146 * 1 2 3 28 28 H 1.09004 * 109.47261 * 300.00128 * 1 2 3 29 29 H 1.08998 * 109.47533 * 119.99674 * 2 1 3 30 30 H 1.08996 * 109.47853 * 240.00016 * 2 1 3 31 31 H 1.09003 * 109.46949 * 210.00332 * 4 3 2 32 32 H 1.08997 * 109.47570 * 330.00153 * 4 3 2 33 33 H 0.96998 * 120.00309 * 179.97438 * 8 7 5 34 34 H 1.09005 * 109.47116 * 299.99872 * 15 13 3 35 35 H 1.09000 * 109.47720 * 59.99819 * 15 13 3 36 36 H 1.00907 * 110.99284 * 303.95838 * 16 15 13 37 37 H 1.08998 * 110.71625 * 324.77965 * 19 17 16 38 38 H 1.09001 * 110.72021 * 88.05845 * 19 17 16 39 39 H 1.08996 * 109.88152 * 262.76968 * 20 19 17 40 40 H 1.09002 * 110.00941 * 141.68116 * 20 19 17 41 41 H 1.08995 * 109.47414 * 59.99608 * 23 22 21 42 42 H 1.09002 * 109.47580 * 179.97438 * 23 22 21 43 43 H 1.08999 * 109.47350 * 300.00224 * 23 22 21 44 44 H 1.08997 * 110.36565 * 217.03306 * 25 21 20 45 45 H 1.08995 * 110.46409 * 94.75593 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.2625 2.0718 1.2687 5 6 3.6857 1.8351 1.7038 6 1 4.3427 1.2304 1.0962 7 6 4.1493 2.3906 2.8775 8 7 3.3496 3.1274 3.6172 9 14 5.9134 2.0966 3.4171 10 1 6.6008 1.2406 2.4170 11 1 6.6214 3.3974 3.5247 12 1 5.9204 1.4184 4.7382 13 6 2.2430 2.0165 -1.1672 14 8 2.6469 3.1602 -1.1672 15 6 1.9924 1.3060 -2.4722 16 7 2.3099 2.2061 -3.5889 17 6 2.0765 1.5460 -4.8801 18 1 2.3617 0.4948 -4.8364 19 6 2.8264 2.2795 -6.0234 20 6 1.9788 1.9384 -7.2671 21 7 0.6345 1.5776 -6.7938 22 6 -0.3967 1.1962 -7.5734 23 6 -0.2206 1.1115 -9.0676 24 8 -1.4663 0.9210 -7.0722 25 6 0.6010 1.7028 -5.3253 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 0.5139 0.8900 29 1 1.8934 -0.5138 0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 2.0955 3.1411 1.1384 32 1 1.5817 1.6877 2.0284 33 1 3.6756 3.5179 4.4431 34 1 2.6230 0.4187 -2.5298 35 1 0.9446 1.0114 -2.5303 36 1 1.7842 3.0648 -3.5217 37 1 2.8388 3.3552 -5.8484 38 1 3.8401 1.8931 -6.1298 39 1 2.4228 1.0970 -7.7990 40 1 1.9195 2.8041 -7.9269 41 1 0.5653 0.3932 -9.3007 42 1 -1.1553 0.7883 -9.5259 43 1 0.0556 2.0913 -9.4570 44 1 -0.0122 0.9131 -4.8911 45 1 0.2191 2.6815 -5.0349 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001180557128.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:40:00 Heat of formation + Delta-G solvation = -65.773755 kcal Electronic energy + Delta-G solvation = -24300.256336 eV Core-core repulsion = 20738.773432 eV Total energy + Delta-G solvation = -3561.482904 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.35973 -39.14589 -37.91988 -35.41189 -34.77198 -32.78948 -31.48149 -30.14773 -30.09082 -28.72117 -27.23354 -25.35987 -23.50961 -23.00713 -22.20590 -21.15784 -19.65971 -18.40721 -17.36004 -16.88552 -16.59382 -16.29597 -15.97246 -15.50750 -14.96073 -14.83394 -14.47793 -14.22148 -13.90623 -13.46016 -13.38862 -13.16059 -13.05206 -12.84822 -12.77461 -12.58755 -12.38038 -12.05776 -12.03613 -11.77369 -11.69326 -11.47602 -11.19436 -11.07001 -10.88228 -10.72559 -10.52885 -10.19792 -10.11574 -9.60123 -9.02990 -8.91900 -8.44244 -8.42434 -7.64992 -6.03061 -4.07463 2.32795 2.63820 3.30739 3.37467 3.40141 3.45442 3.67380 4.07422 4.22359 4.39136 4.47344 4.55899 4.69862 4.84579 4.88959 5.00034 5.00748 5.06543 5.18664 5.26580 5.31659 5.34417 5.44965 5.47137 5.51919 5.56967 5.64769 5.74891 5.77861 5.79161 5.91678 6.03028 6.22799 6.47096 6.78097 7.10852 7.17967 7.27496 7.45624 7.56531 7.84482 7.93757 8.25145 8.43436 8.92244 9.11416 9.57692 11.05083 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.026460 B = 0.002908 C = 0.002726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1057.957993 B = 9626.122672 C =10270.799293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.107 3.893 3 N -0.598 5.598 4 C 0.247 3.753 5 C -0.523 4.523 6 H 0.058 0.942 7 C 0.060 3.940 8 N -0.896 5.896 9 Si 0.898 3.102 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.284 1.284 13 C 0.504 3.496 14 O -0.529 6.529 15 C 0.038 3.962 16 N -0.655 5.655 17 C 0.078 3.922 18 H 0.096 0.904 19 C -0.121 4.121 20 C 0.100 3.900 21 N -0.618 5.618 22 C 0.523 3.477 23 C -0.169 4.169 24 O -0.548 6.548 25 C 0.072 3.928 26 H 0.059 0.941 27 H 0.049 0.951 28 H 0.061 0.939 29 H 0.083 0.917 30 H 0.063 0.937 31 H 0.043 0.957 32 H 0.031 0.969 33 H 0.262 0.738 34 H 0.097 0.903 35 H 0.055 0.945 36 H 0.354 0.646 37 H 0.085 0.915 38 H 0.089 0.911 39 H 0.071 0.929 40 H 0.071 0.929 41 H 0.087 0.913 42 H 0.091 0.909 43 H 0.087 0.913 44 H 0.077 0.923 45 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.458 -6.557 -22.639 23.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.018 4.018 3 N -0.331 5.331 4 C 0.128 3.872 5 C -0.562 4.562 6 H 0.076 0.924 7 C -0.142 4.142 8 N -0.535 5.535 9 Si 0.726 3.274 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.210 1.210 13 C 0.290 3.710 14 O -0.405 6.405 15 C -0.094 4.094 16 N -0.286 5.286 17 C -0.034 4.034 18 H 0.114 0.886 19 C -0.160 4.160 20 C -0.023 4.023 21 N -0.353 5.353 22 C 0.313 3.687 23 C -0.228 4.228 24 O -0.425 6.425 25 C -0.053 4.053 26 H 0.078 0.922 27 H 0.068 0.932 28 H 0.080 0.920 29 H 0.101 0.899 30 H 0.081 0.919 31 H 0.061 0.939 32 H 0.049 0.951 33 H 0.072 0.928 34 H 0.115 0.885 35 H 0.073 0.927 36 H 0.175 0.825 37 H 0.103 0.897 38 H 0.108 0.892 39 H 0.089 0.911 40 H 0.089 0.911 41 H 0.106 0.894 42 H 0.110 0.890 43 H 0.106 0.894 44 H 0.096 0.904 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -4.207 -6.141 -22.204 23.418 hybrid contribution 0.026 -0.207 0.398 0.450 sum -4.181 -6.348 -21.805 23.092 Atomic orbital electron populations 1.22226 0.96839 1.01430 1.02270 1.21407 0.93428 0.84296 1.02650 1.48254 1.63878 1.13241 1.07710 1.19262 0.96282 0.93617 0.78087 1.21472 0.96906 1.31693 1.06168 0.92417 1.24942 0.97855 0.94957 0.96437 1.69942 1.35609 1.33556 1.14369 0.86444 0.84672 0.78051 0.78254 1.19793 1.20892 1.21023 1.20130 0.78921 0.87121 0.84847 1.90679 1.44978 1.17945 1.86926 1.21980 1.00168 0.96723 0.90503 1.60186 1.62254 1.06940 0.99244 1.22813 0.91701 0.99243 0.89622 0.88621 1.22650 0.99062 1.02255 0.92000 1.22135 0.82079 1.00360 0.97737 1.48468 1.11916 1.67385 1.07564 1.20548 0.82565 0.76136 0.89478 1.21889 1.05160 1.04264 0.91499 1.90742 1.26001 1.49635 1.76140 1.23136 0.99279 1.02271 0.80570 0.92163 0.93232 0.91983 0.89896 0.91871 0.93932 0.95054 0.92804 0.88513 0.92733 0.82527 0.89660 0.89198 0.91105 0.91080 0.89407 0.88974 0.89422 0.90417 0.91233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.26 10.24 37.16 0.38 -1.88 16 2 C 0.11 1.67 5.93 -4.04 -0.02 1.65 16 3 N -0.60 -12.41 2.46 -175.07 -0.43 -12.84 16 4 C 0.25 6.42 5.16 -5.20 -0.03 6.39 16 5 C -0.52 -14.85 9.39 -34.44 -0.32 -15.17 16 6 H 0.06 1.64 7.81 -52.48 -0.41 1.23 16 7 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 8 N -0.90 -26.71 13.29 55.43 0.74 -25.98 16 9 Si 0.90 21.95 29.54 -169.99 -5.02 16.93 16 10 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 11 H -0.28 -6.93 7.11 56.52 0.40 -6.52 16 12 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 13 C 0.50 10.20 7.71 -10.99 -0.08 10.12 16 14 O -0.53 -13.09 15.78 5.55 0.09 -13.00 16 15 C 0.04 0.54 4.59 -4.98 -0.02 0.52 16 16 N -0.65 -8.56 6.00 -105.73 -0.63 -9.19 16 17 C 0.08 0.75 3.32 -65.57 -0.22 0.53 16 18 H 0.10 0.88 7.92 -51.93 -0.41 0.46 16 19 C -0.12 -0.92 6.65 -24.90 -0.17 -1.08 16 20 C 0.10 0.62 6.49 -3.07 -0.02 0.60 16 21 N -0.62 -5.75 3.33 -170.53 -0.57 -6.32 16 22 C 0.52 5.55 7.96 -10.99 -0.09 5.46 16 23 C -0.17 -0.99 9.51 36.00 0.34 -0.65 16 24 O -0.55 -8.37 17.34 5.55 0.10 -8.27 16 25 C 0.07 0.74 6.49 -2.53 -0.02 0.73 16 26 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.05 0.63 7.22 -51.93 -0.38 0.26 16 28 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 29 H 0.08 1.36 8.07 -51.93 -0.42 0.94 16 30 H 0.06 0.81 6.44 -51.93 -0.33 0.48 16 31 H 0.04 1.25 7.42 -51.93 -0.39 0.87 16 32 H 0.03 0.83 8.07 -51.93 -0.42 0.41 16 33 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 34 H 0.10 1.25 7.35 -51.93 -0.38 0.86 16 35 H 0.05 0.67 7.19 -51.93 -0.37 0.30 16 36 H 0.35 4.83 8.00 -39.29 -0.31 4.52 16 37 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 38 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 40 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 41 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 42 H 0.09 0.55 8.12 -51.93 -0.42 0.13 16 43 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 44 H 0.08 0.89 8.04 -51.93 -0.42 0.47 16 45 H 0.07 0.75 7.80 -51.93 -0.40 0.35 16 LS Contribution 370.84 15.07 5.59 5.59 Total: -1.00 -36.01 370.84 -8.09 -44.10 By element: Atomic # 1 Polarization: 7.72 SS G_CDS: -7.58 Total: 0.14 kcal Atomic # 6 Polarization: 9.20 SS G_CDS: -0.36 Total: 8.84 kcal Atomic # 7 Polarization: -53.43 SS G_CDS: -0.90 Total: -54.32 kcal Atomic # 8 Polarization: -21.45 SS G_CDS: 0.18 Total: -21.27 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -36.01 -8.09 -44.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001180557128.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.674 kcal (2) G-P(sol) polarization free energy of solvation -36.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds