Wall clock time and date at job start Tue Mar 31 2020 03:40:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46506 * 109.47289 * 2 1 4 4 C 1.46498 * 119.99755 * 89.99723 * 3 2 1 5 5 C 1.50694 * 109.47360 * 90.00702 * 4 3 2 6 6 H 1.08009 * 119.99986 * 359.97438 * 5 4 3 7 7 C 1.37876 * 120.00318 * 179.97438 * 5 4 3 8 8 N 1.31517 * 120.00228 * 359.97438 * 7 5 4 9 9 Si 1.86805 * 120.00152 * 179.97438 * 7 5 4 10 10 H 1.48508 * 109.46951 * 0.02562 * 9 7 5 11 11 H 1.48496 * 109.47125 * 119.99925 * 9 7 5 12 12 H 1.48500 * 109.47285 * 240.00037 * 9 7 5 13 13 C 1.34774 * 119.99868 * 269.99911 * 3 2 1 14 14 O 1.21283 * 119.99927 * 179.97438 * 13 3 2 15 15 C 1.50692 * 120.00104 * 359.97438 * 13 3 2 16 16 N 1.46904 * 109.47570 * 179.97438 * 15 13 3 17 17 C 1.46891 * 111.00545 * 180.02562 * 16 15 13 18 18 H 1.09005 * 110.88483 * 322.57060 * 17 16 15 19 19 C 1.55160 * 111.00516 * 198.65100 * 17 16 15 20 20 C 1.54322 * 102.93901 * 206.42145 * 19 17 16 21 21 N 1.47019 * 107.27444 * 22.19077 * 20 19 17 22 22 C 1.34781 * 125.64483 * 181.02127 * 21 20 19 23 23 C 1.50689 * 120.00499 * 0.04370 * 22 21 20 24 24 O 1.21287 * 119.99403 * 180.02562 * 22 21 20 25 25 C 1.47420 * 108.70373 * 1.06191 * 21 20 19 26 26 H 1.09002 * 109.47153 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.46832 * 60.00146 * 1 2 3 28 28 H 1.09004 * 109.47261 * 300.00128 * 1 2 3 29 29 H 1.08998 * 109.47533 * 119.99674 * 2 1 3 30 30 H 1.08996 * 109.47853 * 240.00016 * 2 1 3 31 31 H 1.09003 * 109.46949 * 210.00332 * 4 3 2 32 32 H 1.08997 * 109.47570 * 330.00153 * 4 3 2 33 33 H 0.96998 * 120.00309 * 179.97438 * 8 7 5 34 34 H 1.09005 * 109.47116 * 299.99872 * 15 13 3 35 35 H 1.09000 * 109.47720 * 59.99819 * 15 13 3 36 36 H 1.00907 * 110.99284 * 303.95838 * 16 15 13 37 37 H 1.08998 * 110.71625 * 324.77965 * 19 17 16 38 38 H 1.09001 * 110.72021 * 88.05845 * 19 17 16 39 39 H 1.08996 * 109.88152 * 262.76968 * 20 19 17 40 40 H 1.09002 * 110.00941 * 141.68116 * 20 19 17 41 41 H 1.08995 * 109.47414 * 59.99608 * 23 22 21 42 42 H 1.09002 * 109.47580 * 179.97438 * 23 22 21 43 43 H 1.08999 * 109.47350 * 300.00224 * 23 22 21 44 44 H 1.08997 * 110.36565 * 217.03306 * 25 21 20 45 45 H 1.08995 * 110.46409 * 94.75593 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.2625 2.0718 1.2687 5 6 3.6857 1.8351 1.7038 6 1 4.3427 1.2304 1.0962 7 6 4.1493 2.3906 2.8775 8 7 3.3496 3.1274 3.6172 9 14 5.9134 2.0966 3.4171 10 1 6.6008 1.2406 2.4170 11 1 6.6214 3.3974 3.5247 12 1 5.9204 1.4184 4.7382 13 6 2.2430 2.0165 -1.1672 14 8 2.6469 3.1602 -1.1672 15 6 1.9924 1.3060 -2.4722 16 7 2.3099 2.2061 -3.5889 17 6 2.0765 1.5460 -4.8801 18 1 2.3617 0.4948 -4.8364 19 6 2.8264 2.2795 -6.0234 20 6 1.9788 1.9384 -7.2671 21 7 0.6345 1.5776 -6.7938 22 6 -0.3967 1.1962 -7.5734 23 6 -0.2206 1.1115 -9.0676 24 8 -1.4663 0.9210 -7.0722 25 6 0.6010 1.7028 -5.3253 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 0.5139 0.8900 29 1 1.8934 -0.5138 0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 2.0955 3.1411 1.1384 32 1 1.5817 1.6877 2.0284 33 1 3.6756 3.5179 4.4431 34 1 2.6230 0.4187 -2.5298 35 1 0.9446 1.0114 -2.5303 36 1 1.7842 3.0648 -3.5217 37 1 2.8388 3.3552 -5.8484 38 1 3.8401 1.8931 -6.1298 39 1 2.4228 1.0970 -7.7990 40 1 1.9195 2.8041 -7.9269 41 1 0.5653 0.3932 -9.3007 42 1 -1.1553 0.7883 -9.5259 43 1 0.0556 2.0913 -9.4570 44 1 -0.0122 0.9131 -4.8911 45 1 0.2191 2.6815 -5.0349 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001180557128.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:40:00 Heat of formation + Delta-G solvation = -92.748141 kcal Electronic energy + Delta-G solvation = -24301.426033 eV Core-core repulsion = 20738.773432 eV Total energy + Delta-G solvation = -3562.652601 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.17710 -40.64239 -38.82661 -36.98066 -35.86383 -34.87096 -32.33891 -31.59577 -30.72838 -29.88160 -28.66453 -26.71490 -24.74660 -24.21460 -23.68131 -21.92887 -20.37874 -19.90156 -18.63960 -18.19755 -17.86901 -17.65084 -17.18019 -16.73885 -16.29165 -16.11715 -15.63307 -15.55848 -14.76391 -14.72474 -14.51126 -14.29748 -14.19607 -13.80592 -13.69919 -13.55210 -13.33373 -13.29071 -13.18629 -13.04648 -12.99816 -12.68883 -12.59061 -12.48780 -12.39644 -12.15613 -11.87107 -11.71161 -11.67616 -11.04126 -10.64706 -10.56165 -9.77530 -9.49694 -9.37379 -8.21906 -6.36632 1.36592 1.39206 1.51105 1.57384 1.84312 1.94606 2.26982 2.42547 3.07367 3.11327 3.49121 3.66194 3.73669 3.90469 3.99236 4.10691 4.23945 4.29006 4.33066 4.42871 4.43620 4.49794 4.58920 4.62051 4.64470 4.77598 4.80779 4.92297 4.97086 5.03093 5.04575 5.13293 5.20471 5.21971 5.25842 5.36236 5.58581 5.83075 5.93766 6.07265 6.21343 6.49434 6.71629 6.82635 7.09202 7.29436 7.51388 8.85386 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.026460 B = 0.002908 C = 0.002726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1057.957993 B = 9626.122672 C =10270.799293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.100 3.900 3 N -0.605 5.605 4 C 0.262 3.738 5 C -0.539 4.539 6 H 0.054 0.946 7 C 0.005 3.995 8 N -0.930 5.930 9 Si 0.969 3.031 10 H -0.265 1.265 11 H -0.282 1.282 12 H -0.270 1.270 13 C 0.494 3.506 14 O -0.585 6.585 15 C 0.056 3.944 16 N -0.668 5.668 17 C 0.084 3.916 18 H 0.109 0.891 19 C -0.118 4.118 20 C 0.102 3.898 21 N -0.617 5.617 22 C 0.513 3.487 23 C -0.159 4.159 24 O -0.607 6.607 25 C 0.072 3.928 26 H 0.094 0.906 27 H 0.056 0.944 28 H 0.038 0.962 29 H 0.072 0.928 30 H 0.101 0.899 31 H -0.005 1.005 32 H 0.020 0.980 33 H 0.267 0.733 34 H 0.120 0.880 35 H 0.079 0.921 36 H 0.347 0.653 37 H 0.075 0.925 38 H 0.104 0.896 39 H 0.098 0.902 40 H 0.091 0.909 41 H 0.114 0.886 42 H 0.088 0.912 43 H 0.110 0.890 44 H 0.062 0.938 45 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.016 -8.549 -25.110 26.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.022 4.022 3 N -0.337 5.337 4 C 0.141 3.859 5 C -0.577 4.577 6 H 0.072 0.928 7 C -0.194 4.194 8 N -0.570 5.570 9 Si 0.793 3.207 10 H -0.190 1.190 11 H -0.208 1.208 12 H -0.195 1.195 13 C 0.282 3.718 14 O -0.465 6.465 15 C -0.076 4.076 16 N -0.300 5.300 17 C -0.027 4.027 18 H 0.127 0.873 19 C -0.156 4.156 20 C -0.020 4.020 21 N -0.351 5.351 22 C 0.304 3.696 23 C -0.218 4.218 24 O -0.489 6.489 25 C -0.053 4.053 26 H 0.113 0.887 27 H 0.075 0.925 28 H 0.057 0.943 29 H 0.091 0.909 30 H 0.120 0.880 31 H 0.013 0.987 32 H 0.038 0.962 33 H 0.075 0.925 34 H 0.138 0.862 35 H 0.096 0.904 36 H 0.167 0.833 37 H 0.094 0.906 38 H 0.122 0.878 39 H 0.117 0.883 40 H 0.109 0.891 41 H 0.132 0.868 42 H 0.107 0.893 43 H 0.129 0.871 44 H 0.081 0.919 45 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -2.751 -8.176 -24.712 26.175 hybrid contribution -0.451 0.442 1.161 1.322 sum -3.201 -7.734 -23.551 24.994 Atomic orbital electron populations 1.22157 0.94903 1.03416 1.01480 1.21732 0.94991 0.81444 1.04031 1.48283 1.64010 1.15112 1.06254 1.18686 0.95310 0.91467 0.80480 1.21733 0.97812 1.31759 1.06427 0.92809 1.25888 1.02477 0.94511 0.96489 1.70064 1.37761 1.34348 1.14866 0.85347 0.78947 0.78005 0.78375 1.18958 1.20813 1.19478 1.21240 0.77362 0.86704 0.86464 1.90641 1.47430 1.20580 1.87896 1.21870 1.02000 0.96460 0.87248 1.60232 1.62514 1.06879 1.00327 1.22860 0.91476 0.99919 0.88455 0.87324 1.22660 0.99819 1.01525 0.91595 1.22340 0.80037 1.02320 0.97325 1.48603 1.13014 1.66505 1.06995 1.21463 0.81765 0.74972 0.91352 1.21907 1.06020 1.06294 0.87582 1.90712 1.28324 1.52431 1.77451 1.23019 0.99493 1.01057 0.81770 0.88701 0.92507 0.94324 0.90902 0.88046 0.98669 0.96191 0.92457 0.86184 0.90363 0.83326 0.90591 0.87783 0.88340 0.89114 0.86797 0.89321 0.87150 0.91899 0.92482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.07 10.24 71.98 0.74 -3.34 16 2 C 0.10 3.02 5.93 86.38 0.51 3.54 16 3 N -0.60 -25.56 2.46 -826.18 -2.03 -27.59 16 4 C 0.26 14.34 5.16 85.63 0.44 14.78 16 5 C -0.54 -31.38 9.39 25.60 0.24 -31.14 16 6 H 0.05 3.10 7.81 -2.91 -0.02 3.08 16 7 C 0.00 0.29 5.46 84.65 0.46 0.75 16 8 N -0.93 -57.05 13.29 21.45 0.28 -56.77 16 9 Si 0.97 45.33 29.54 68.60 2.03 47.36 16 10 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 11 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 12 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 13 C 0.49 20.26 7.71 87.66 0.68 20.94 16 14 O -0.59 -30.26 15.78 -3.04 -0.05 -30.30 16 15 C 0.06 1.50 4.59 85.55 0.39 1.89 16 16 N -0.67 -16.82 6.00 -488.41 -2.93 -19.75 16 17 C 0.08 1.44 3.32 46.31 0.15 1.59 16 18 H 0.11 1.62 7.92 -2.38 -0.02 1.60 16 19 C -0.12 -1.46 6.65 31.78 0.21 -1.25 16 20 C 0.10 0.90 6.49 86.73 0.56 1.46 16 21 N -0.62 -10.24 3.33 -811.83 -2.70 -12.94 16 22 C 0.51 10.14 7.96 87.65 0.70 10.83 16 23 C -0.16 -1.40 9.51 71.23 0.68 -0.72 16 24 O -0.61 -18.69 17.34 -3.05 -0.05 -18.75 16 25 C 0.07 1.42 6.49 86.86 0.56 1.98 16 26 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 27 H 0.06 1.35 7.22 -2.39 -0.02 1.33 16 28 H 0.04 1.14 8.14 -2.38 -0.02 1.13 16 29 H 0.07 2.35 8.07 -2.39 -0.02 2.33 16 30 H 0.10 2.29 6.44 -2.39 -0.02 2.27 16 31 H 0.00 -0.31 7.42 -2.39 -0.02 -0.32 16 32 H 0.02 1.12 8.07 -2.39 -0.02 1.10 16 33 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 34 H 0.12 2.69 7.35 -2.38 -0.02 2.67 16 35 H 0.08 1.75 7.19 -2.39 -0.02 1.73 16 36 H 0.35 9.60 8.00 -89.69 -0.72 8.88 16 37 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 38 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 39 H 0.10 0.41 8.14 -2.39 -0.02 0.39 16 40 H 0.09 0.52 8.14 -2.39 -0.02 0.50 16 41 H 0.11 0.43 8.14 -2.39 -0.02 0.41 16 42 H 0.09 0.88 8.12 -2.39 -0.02 0.86 16 43 H 0.11 0.49 8.14 -2.39 -0.02 0.47 16 44 H 0.06 1.41 8.04 -2.39 -0.02 1.39 16 45 H 0.06 1.25 7.80 -2.39 -0.02 1.23 16 Total: -1.00 -84.03 370.84 1.13 -82.90 By element: Atomic # 1 Polarization: 14.27 SS G_CDS: 0.25 Total: 14.53 kcal Atomic # 6 Polarization: 14.99 SS G_CDS: 6.33 Total: 21.32 kcal Atomic # 7 Polarization: -109.67 SS G_CDS: -7.38 Total: -117.04 kcal Atomic # 8 Polarization: -48.95 SS G_CDS: -0.10 Total: -49.05 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 2.03 Total: 47.36 kcal Total: -84.03 1.13 -82.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001180557128.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.853 kcal (2) G-P(sol) polarization free energy of solvation -84.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.896 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds