Wall clock time and date at job start Tue Mar 31 2020 03:54:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 O 1.21283 * 119.99665 * 2 1 4 4 N 1.34773 * 119.99719 * 180.28156 * 2 1 3 5 5 C 1.46497 * 119.99867 * 179.72548 * 4 2 1 6 6 C 1.52996 * 109.47283 * 179.97438 * 5 4 2 7 7 C 1.53000 * 109.47155 * 299.99715 * 6 5 4 8 8 C 1.52998 * 109.47163 * 59.99892 * 6 5 4 9 9 C 1.50701 * 109.47321 * 179.97438 * 6 5 4 10 10 O 1.21284 * 119.99763 * 355.75930 * 9 6 5 11 11 N 1.34779 * 120.00251 * 175.75410 * 9 6 5 12 12 C 1.47023 * 125.64735 * 354.38817 * 11 9 6 13 13 C 1.54319 * 107.27307 * 181.01854 * 12 11 9 14 14 C 1.55163 * 102.94003 * 22.19137 * 13 12 11 15 15 H 1.08994 * 111.00733 * 82.57151 * 14 13 12 16 16 N 1.46504 * 111.00110 * 206.38689 * 14 13 12 17 17 C 1.36937 * 120.00025 * 273.54573 * 16 14 13 18 18 H 1.08002 * 119.99854 * 0.02562 * 17 16 14 19 19 C 1.38814 * 119.99925 * 180.02562 * 17 16 14 20 20 N 1.31620 * 119.99901 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 119.99787 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.47000 * 89.99915 * 21 19 17 23 23 H 1.48498 * 109.46951 * 209.99767 * 21 19 17 24 24 H 1.48497 * 109.47289 * 329.99701 * 21 19 17 25 25 C 1.47422 * 125.65075 * 174.07073 * 11 9 6 26 26 H 1.09003 * 109.47265 * 89.99890 * 1 2 3 27 27 H 1.08994 * 109.46972 * 209.99522 * 1 2 3 28 28 H 1.09003 * 109.47177 * 330.00252 * 1 2 3 29 29 H 0.97004 * 120.00167 * 359.71903 * 4 2 1 30 30 H 1.08998 * 109.46941 * 299.99716 * 5 4 2 31 31 H 1.08997 * 109.47115 * 59.99264 * 5 4 2 32 32 H 1.09003 * 109.46807 * 44.03812 * 7 6 5 33 33 H 1.08997 * 109.47146 * 164.03188 * 7 6 5 34 34 H 1.09001 * 109.47539 * 284.03689 * 7 6 5 35 35 H 1.08994 * 109.47542 * 65.62582 * 8 6 5 36 36 H 1.09002 * 109.47291 * 185.62626 * 8 6 5 37 37 H 1.09004 * 109.47039 * 305.61996 * 8 6 5 38 38 H 1.09005 * 109.87846 * 300.43423 * 12 11 9 39 39 H 1.08993 * 109.88472 * 61.59589 * 12 11 9 40 40 H 1.08996 * 110.72208 * 140.54965 * 13 12 11 41 41 H 1.08994 * 110.72205 * 263.65278 * 13 12 11 42 42 H 0.97001 * 119.99633 * 93.54404 * 16 14 13 43 43 H 0.96997 * 120.00060 * 179.97438 * 20 19 17 44 44 H 1.09003 * 110.36627 * 274.75348 * 25 11 9 45 45 H 1.09001 * 110.36243 * 37.07451 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1672 -0.0057 5 6 3.6458 -1.1672 -0.0118 6 6 4.1558 -2.6097 -0.0169 7 6 3.6511 -3.3335 1.2330 8 6 3.6406 -3.3283 -1.2655 9 6 5.6628 -2.6097 -0.0238 10 8 6.2688 -1.5620 -0.1022 11 7 6.3371 -3.7738 0.0573 12 6 5.7368 -5.0985 0.2730 13 6 6.8906 -6.1222 0.3202 14 6 8.1163 -5.2473 0.6940 15 1 8.1647 -5.0819 1.7702 16 7 9.3591 -5.8467 0.2013 17 6 10.0171 -6.7785 0.9588 18 1 9.6198 -7.0719 1.9193 19 6 11.1949 -7.3460 0.4923 20 7 11.6788 -6.9889 -0.6785 21 14 12.0929 -8.6166 1.5260 22 1 11.5955 -9.9735 1.1847 23 1 13.5499 -8.5395 1.2495 24 1 11.8473 -8.3469 2.9654 25 6 7.7981 -3.9307 -0.0621 26 1 -0.3634 0.0000 -1.0277 27 1 -0.3633 -0.8900 0.5137 28 1 -0.3634 0.8900 0.5138 29 1 1.6958 -2.0073 -0.0057 30 1 4.0054 -0.6512 -0.9020 31 1 4.0128 -0.6555 0.8779 32 1 2.5990 -3.0956 1.3906 33 1 3.7643 -4.4094 1.1004 34 1 4.2301 -3.0111 2.0984 35 1 4.0801 -2.8742 -2.1535 36 1 3.9196 -4.3811 -1.2199 37 1 2.5550 -3.2419 -1.3125 38 1 5.1926 -5.1095 1.2174 39 1 5.0621 -5.3380 -0.5488 40 1 6.7067 -6.8756 1.0861 41 1 7.0306 -6.5908 -0.6539 42 1 9.7157 -5.5835 -0.6615 43 1 12.5020 -7.3851 -1.0044 44 1 8.0864 -4.0130 -1.1101 45 1 8.3094 -3.0907 0.4080 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001186258388.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:54:16 Heat of formation + Delta-G solvation = -56.192004 kcal Electronic energy + Delta-G solvation = -24627.418005 eV Core-core repulsion = 21066.350597 eV Total energy + Delta-G solvation = -3561.067408 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.75270 -39.60482 -37.60115 -36.40642 -34.31590 -33.39157 -31.45550 -30.23956 -29.63766 -27.90446 -27.64778 -26.37002 -24.30018 -23.18950 -21.61019 -20.58659 -20.15613 -19.00138 -17.38777 -17.20722 -16.76522 -15.98994 -15.87248 -15.85272 -15.23333 -14.88208 -14.48398 -14.11240 -13.96782 -13.64921 -13.45774 -13.35296 -13.01381 -12.91776 -12.87587 -12.65952 -12.42326 -12.14114 -12.09742 -11.91080 -11.68775 -11.36974 -11.17455 -11.03419 -10.81387 -10.69426 -10.33670 -10.18458 -10.09714 -9.80881 -9.62376 -9.33516 -8.99768 -8.45416 -7.09104 -5.86178 -3.17018 2.39253 2.64769 2.75179 3.22772 3.38007 3.43766 3.45452 4.16229 4.39613 4.50974 4.52240 4.52808 4.75839 4.84852 4.97146 5.01933 5.06880 5.19811 5.22642 5.26333 5.41722 5.44921 5.49242 5.50130 5.53878 5.60487 5.69129 5.75115 5.86363 5.90137 5.97340 6.10442 6.13170 6.18594 6.31685 6.49241 6.55537 6.85888 7.19200 7.61361 7.64975 7.95614 8.20699 8.31196 9.42785 9.96544 10.31321 11.35974 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.045179 B = 0.002665 C = 0.002608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 619.602981 B =10504.758115 C =10733.634702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.507 3.493 3 O -0.544 6.544 4 N -0.729 5.729 5 C 0.143 3.857 6 C -0.089 4.089 7 C -0.155 4.155 8 C -0.147 4.147 9 C 0.539 3.461 10 O -0.540 6.540 11 N -0.607 5.607 12 C 0.090 3.910 13 C -0.157 4.157 14 C 0.173 3.827 15 H 0.063 0.937 16 N -0.715 5.715 17 C -0.245 4.245 18 H 0.072 0.928 19 C -0.010 4.010 20 N -0.930 5.930 21 Si 0.909 3.091 22 H -0.289 1.289 23 H -0.291 1.291 24 H -0.281 1.281 25 C 0.098 3.902 26 H 0.093 0.907 27 H 0.079 0.921 28 H 0.092 0.908 29 H 0.399 0.601 30 H 0.078 0.922 31 H 0.076 0.924 32 H 0.065 0.935 33 H 0.079 0.921 34 H 0.065 0.935 35 H 0.064 0.936 36 H 0.074 0.926 37 H 0.065 0.935 38 H 0.072 0.928 39 H 0.066 0.934 40 H 0.074 0.926 41 H 0.076 0.924 42 H 0.386 0.614 43 H 0.257 0.743 44 H 0.069 0.931 45 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.434 5.450 0.949 25.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.294 3.706 3 O -0.421 6.421 4 N -0.383 5.383 5 C 0.019 3.981 6 C -0.093 4.093 7 C -0.212 4.212 8 C -0.204 4.204 9 C 0.326 3.674 10 O -0.417 6.417 11 N -0.341 5.341 12 C -0.033 4.033 13 C -0.198 4.198 14 C 0.061 3.939 15 H 0.081 0.919 16 N -0.355 5.355 17 C -0.376 4.376 18 H 0.090 0.910 19 C -0.207 4.207 20 N -0.577 5.577 21 Si 0.740 3.260 22 H -0.216 1.216 23 H -0.217 1.217 24 H -0.207 1.207 25 C -0.025 4.025 26 H 0.111 0.889 27 H 0.098 0.902 28 H 0.111 0.889 29 H 0.235 0.765 30 H 0.096 0.904 31 H 0.094 0.906 32 H 0.084 0.916 33 H 0.097 0.903 34 H 0.084 0.916 35 H 0.083 0.917 36 H 0.092 0.908 37 H 0.084 0.916 38 H 0.090 0.910 39 H 0.084 0.916 40 H 0.093 0.907 41 H 0.095 0.905 42 H 0.221 0.779 43 H 0.067 0.933 44 H 0.088 0.912 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -23.591 6.731 1.031 24.554 hybrid contribution 0.407 -1.236 0.169 1.312 sum -23.184 5.495 1.199 23.856 Atomic orbital electron populations 1.21882 0.91648 1.04851 1.04767 1.20809 0.90571 0.83445 0.75781 1.90760 1.70801 1.31393 1.49125 1.46171 1.07484 1.08774 1.75917 1.21070 0.78817 0.94204 1.03976 1.20894 0.92955 0.96921 0.98522 1.22180 1.01487 1.01453 0.96067 1.21994 1.01230 1.01224 0.95958 1.19806 0.88564 0.82564 0.76487 1.90735 1.70084 1.30637 1.50221 1.48327 1.08597 1.06405 1.70758 1.22527 0.97340 0.82762 1.00623 1.23443 0.95656 0.97603 1.03074 1.21327 0.86911 0.89103 0.96593 0.91898 1.42258 1.23041 1.47959 1.22291 1.19194 1.03487 1.14605 1.00274 0.90990 1.24780 0.98193 1.00516 0.97176 1.69660 1.22778 1.46223 1.19059 0.86165 0.79081 0.81313 0.79446 1.21632 1.21704 1.20681 1.22601 0.78939 0.99762 1.01169 0.88854 0.90243 0.88875 0.76532 0.90388 0.90559 0.91636 0.90253 0.91614 0.91696 0.90755 0.91577 0.91037 0.91593 0.90738 0.90546 0.77933 0.93323 0.91250 0.90447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.85 10.30 36.01 0.37 -0.48 16 2 C 0.51 4.93 7.94 -10.98 -0.09 4.85 16 3 O -0.54 -8.22 17.10 5.55 0.09 -8.12 16 4 N -0.73 -5.85 4.74 -60.30 -0.29 -6.14 16 5 C 0.14 1.60 3.86 -4.05 -0.02 1.59 16 6 C -0.09 -0.89 0.50 -155.66 -0.08 -0.97 16 7 C -0.15 -1.18 7.60 37.16 0.28 -0.90 16 8 C -0.15 -1.16 8.17 37.16 0.30 -0.85 16 9 C 0.54 7.83 6.51 -10.98 -0.07 7.75 16 10 O -0.54 -10.07 16.21 5.55 0.09 -9.98 16 11 N -0.61 -8.68 3.32 -170.38 -0.57 -9.25 16 12 C 0.09 1.05 5.09 -3.07 -0.02 1.04 16 13 C -0.16 -2.36 6.64 -24.90 -0.17 -2.53 16 14 C 0.17 3.20 3.70 -65.66 -0.24 2.96 16 15 H 0.06 1.20 8.13 -51.93 -0.42 0.78 16 16 N -0.72 -16.98 5.28 -51.23 -0.27 -17.25 16 17 C -0.24 -6.47 9.98 -15.06 -0.15 -6.62 16 18 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 19 C -0.01 -0.28 5.50 -17.43 -0.10 -0.38 16 20 N -0.93 -27.28 13.06 55.49 0.72 -26.56 16 21 Si 0.91 21.68 29.55 -169.99 -5.02 16.66 16 22 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 23 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 24 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 25 C 0.10 1.68 6.56 -2.41 -0.02 1.67 16 26 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.08 0.20 8.14 -51.93 -0.42 -0.23 16 28 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.40 1.90 6.22 -40.82 -0.25 1.64 16 30 H 0.08 1.05 8.05 -51.93 -0.42 0.63 16 31 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.06 0.36 6.56 -51.93 -0.34 0.02 16 33 H 0.08 0.53 4.98 -51.93 -0.26 0.27 16 34 H 0.06 0.60 8.03 -51.93 -0.42 0.18 16 35 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.07 0.55 5.14 -51.93 -0.27 0.29 16 37 H 0.07 0.35 6.72 -51.93 -0.35 0.01 16 38 H 0.07 0.70 5.71 -51.93 -0.30 0.40 16 39 H 0.07 0.64 5.59 -51.93 -0.29 0.35 16 40 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 41 H 0.08 1.25 8.14 -51.93 -0.42 0.82 16 42 H 0.39 9.83 7.71 -40.82 -0.31 9.52 16 43 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 44 H 0.07 1.23 8.01 -51.93 -0.42 0.82 16 45 H 0.08 1.42 7.98 -51.93 -0.41 1.01 16 LS Contribution 354.93 15.07 5.35 5.35 Total: -1.00 -34.22 354.93 -6.83 -41.05 By element: Atomic # 1 Polarization: 14.08 SS G_CDS: -6.96 Total: 7.12 kcal Atomic # 6 Polarization: 7.11 SS G_CDS: 0.02 Total: 7.13 kcal Atomic # 7 Polarization: -58.80 SS G_CDS: -0.40 Total: -59.20 kcal Atomic # 8 Polarization: -18.29 SS G_CDS: 0.19 Total: -18.11 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -34.22 -6.83 -41.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001186258388.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.141 kcal (2) G-P(sol) polarization free energy of solvation -34.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.051 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds