Wall clock time and date at job start Tue Mar 31 2020 03:54:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 O 1.21283 * 119.99665 * 2 1 4 4 N 1.34773 * 119.99719 * 180.28156 * 2 1 3 5 5 C 1.46497 * 119.99867 * 179.72548 * 4 2 1 6 6 C 1.52996 * 109.47283 * 179.97438 * 5 4 2 7 7 C 1.53000 * 109.47155 * 299.99715 * 6 5 4 8 8 C 1.52998 * 109.47163 * 59.99892 * 6 5 4 9 9 C 1.50701 * 109.47321 * 179.97438 * 6 5 4 10 10 O 1.21284 * 119.99763 * 355.75930 * 9 6 5 11 11 N 1.34779 * 120.00251 * 175.75410 * 9 6 5 12 12 C 1.47023 * 125.64735 * 354.38817 * 11 9 6 13 13 C 1.54319 * 107.27307 * 181.01854 * 12 11 9 14 14 C 1.55163 * 102.94003 * 22.19137 * 13 12 11 15 15 H 1.08994 * 111.00733 * 82.57151 * 14 13 12 16 16 N 1.46504 * 111.00110 * 206.38689 * 14 13 12 17 17 C 1.36937 * 120.00025 * 273.54573 * 16 14 13 18 18 H 1.08002 * 119.99854 * 0.02562 * 17 16 14 19 19 C 1.38814 * 119.99925 * 180.02562 * 17 16 14 20 20 N 1.31620 * 119.99901 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 119.99787 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.47000 * 89.99915 * 21 19 17 23 23 H 1.48498 * 109.46951 * 209.99767 * 21 19 17 24 24 H 1.48497 * 109.47289 * 329.99701 * 21 19 17 25 25 C 1.47422 * 125.65075 * 174.07073 * 11 9 6 26 26 H 1.09003 * 109.47265 * 89.99890 * 1 2 3 27 27 H 1.08994 * 109.46972 * 209.99522 * 1 2 3 28 28 H 1.09003 * 109.47177 * 330.00252 * 1 2 3 29 29 H 0.97004 * 120.00167 * 359.71903 * 4 2 1 30 30 H 1.08998 * 109.46941 * 299.99716 * 5 4 2 31 31 H 1.08997 * 109.47115 * 59.99264 * 5 4 2 32 32 H 1.09003 * 109.46807 * 44.03812 * 7 6 5 33 33 H 1.08997 * 109.47146 * 164.03188 * 7 6 5 34 34 H 1.09001 * 109.47539 * 284.03689 * 7 6 5 35 35 H 1.08994 * 109.47542 * 65.62582 * 8 6 5 36 36 H 1.09002 * 109.47291 * 185.62626 * 8 6 5 37 37 H 1.09004 * 109.47039 * 305.61996 * 8 6 5 38 38 H 1.09005 * 109.87846 * 300.43423 * 12 11 9 39 39 H 1.08993 * 109.88472 * 61.59589 * 12 11 9 40 40 H 1.08996 * 110.72208 * 140.54965 * 13 12 11 41 41 H 1.08994 * 110.72205 * 263.65278 * 13 12 11 42 42 H 0.97001 * 119.99633 * 93.54404 * 16 14 13 43 43 H 0.96997 * 120.00060 * 179.97438 * 20 19 17 44 44 H 1.09003 * 110.36627 * 274.75348 * 25 11 9 45 45 H 1.09001 * 110.36243 * 37.07451 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1672 -0.0057 5 6 3.6458 -1.1672 -0.0118 6 6 4.1558 -2.6097 -0.0169 7 6 3.6511 -3.3335 1.2330 8 6 3.6406 -3.3283 -1.2655 9 6 5.6628 -2.6097 -0.0238 10 8 6.2688 -1.5620 -0.1022 11 7 6.3371 -3.7738 0.0573 12 6 5.7368 -5.0985 0.2730 13 6 6.8906 -6.1222 0.3202 14 6 8.1163 -5.2473 0.6940 15 1 8.1647 -5.0819 1.7702 16 7 9.3591 -5.8467 0.2013 17 6 10.0171 -6.7785 0.9588 18 1 9.6198 -7.0719 1.9193 19 6 11.1949 -7.3460 0.4923 20 7 11.6788 -6.9889 -0.6785 21 14 12.0929 -8.6166 1.5260 22 1 11.5955 -9.9735 1.1847 23 1 13.5499 -8.5395 1.2495 24 1 11.8473 -8.3469 2.9654 25 6 7.7981 -3.9307 -0.0621 26 1 -0.3634 0.0000 -1.0277 27 1 -0.3633 -0.8900 0.5137 28 1 -0.3634 0.8900 0.5138 29 1 1.6958 -2.0073 -0.0057 30 1 4.0054 -0.6512 -0.9020 31 1 4.0128 -0.6555 0.8779 32 1 2.5990 -3.0956 1.3906 33 1 3.7643 -4.4094 1.1004 34 1 4.2301 -3.0111 2.0984 35 1 4.0801 -2.8742 -2.1535 36 1 3.9196 -4.3811 -1.2199 37 1 2.5550 -3.2419 -1.3125 38 1 5.1926 -5.1095 1.2174 39 1 5.0621 -5.3380 -0.5488 40 1 6.7067 -6.8756 1.0861 41 1 7.0306 -6.5908 -0.6539 42 1 9.7157 -5.5835 -0.6615 43 1 12.5020 -7.3851 -1.0044 44 1 8.0864 -4.0130 -1.1101 45 1 8.3094 -3.0907 0.4080 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001186258388.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:54:16 Heat of formation + Delta-G solvation = -82.483810 kcal Electronic energy + Delta-G solvation = -24628.558103 eV Core-core repulsion = 21066.350597 eV Total energy + Delta-G solvation = -3562.207506 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.80920 -40.53002 -38.89836 -37.43237 -35.99165 -34.39934 -33.12889 -31.06413 -30.81622 -29.27276 -28.36399 -27.16111 -25.92199 -24.69070 -22.57507 -21.64246 -21.44943 -20.06183 -19.29026 -18.06804 -17.79585 -17.31203 -16.81695 -16.68800 -16.44299 -16.20870 -15.74359 -15.44242 -15.03387 -14.87482 -14.50959 -14.45172 -14.37300 -14.03003 -13.58451 -13.32066 -13.28305 -13.21585 -13.08399 -12.94701 -12.94040 -12.76608 -12.62895 -12.30122 -12.14116 -12.09293 -11.86924 -11.65987 -11.53202 -11.05080 -10.93166 -10.79941 -10.18677 -9.67450 -9.04915 -7.95355 -5.25556 1.49079 1.50379 1.50818 1.58937 1.64594 1.74203 2.34346 2.57288 3.25315 3.37009 3.54987 3.70930 3.73568 3.86593 3.96310 3.99255 4.07924 4.24054 4.28571 4.48734 4.50408 4.52777 4.56082 4.68874 4.71914 4.73791 4.80421 4.81355 4.84380 4.92204 5.02349 5.13019 5.18142 5.23831 5.28423 5.31896 5.38762 5.43920 5.54390 6.25279 6.47904 6.57250 7.02849 7.27563 7.32025 8.03666 8.27421 9.28017 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.045179 B = 0.002665 C = 0.002608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 619.602981 B =10504.758115 C =10733.634702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.500 3.500 3 O -0.608 6.608 4 N -0.709 5.709 5 C 0.151 3.849 6 C -0.075 4.075 7 C -0.153 4.153 8 C -0.145 4.145 9 C 0.531 3.469 10 O -0.592 6.592 11 N -0.605 5.605 12 C 0.095 3.905 13 C -0.145 4.145 14 C 0.165 3.835 15 H 0.059 0.941 16 N -0.730 5.730 17 C -0.238 4.238 18 H 0.082 0.918 19 C -0.076 4.076 20 N -0.970 5.970 21 Si 0.974 3.026 22 H -0.284 1.284 23 H -0.300 1.300 24 H -0.269 1.269 25 C 0.106 3.894 26 H 0.111 0.889 27 H 0.115 0.885 28 H 0.089 0.911 29 H 0.420 0.580 30 H 0.046 0.954 31 H 0.047 0.953 32 H 0.095 0.905 33 H 0.099 0.901 34 H 0.049 0.951 35 H 0.046 0.954 36 H 0.088 0.912 37 H 0.101 0.899 38 H 0.104 0.896 39 H 0.100 0.900 40 H 0.087 0.913 41 H 0.064 0.936 42 H 0.373 0.627 43 H 0.251 0.749 44 H 0.058 0.942 45 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.392 3.371 1.979 28.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.289 3.711 3 O -0.490 6.490 4 N -0.364 5.364 5 C 0.025 3.975 6 C -0.078 4.078 7 C -0.210 4.210 8 C -0.202 4.202 9 C 0.320 3.680 10 O -0.473 6.473 11 N -0.337 5.337 12 C -0.026 4.026 13 C -0.186 4.186 14 C 0.056 3.944 15 H 0.077 0.923 16 N -0.370 5.370 17 C -0.369 4.369 18 H 0.100 0.900 19 C -0.268 4.268 20 N -0.621 5.621 21 Si 0.803 3.197 22 H -0.211 1.211 23 H -0.227 1.227 24 H -0.193 1.193 25 C -0.019 4.019 26 H 0.130 0.870 27 H 0.133 0.867 28 H 0.108 0.892 29 H 0.260 0.740 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.114 0.886 33 H 0.118 0.882 34 H 0.069 0.931 35 H 0.065 0.935 36 H 0.106 0.894 37 H 0.119 0.881 38 H 0.122 0.878 39 H 0.117 0.883 40 H 0.106 0.894 41 H 0.083 0.917 42 H 0.205 0.795 43 H 0.059 0.941 44 H 0.077 0.923 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -27.652 4.591 2.099 28.108 hybrid contribution 1.595 -0.501 -0.138 1.678 sum -26.056 4.090 1.961 26.448 Atomic orbital electron populations 1.21904 0.87209 1.06496 1.06406 1.21813 0.92604 0.82602 0.74065 1.90740 1.72437 1.33730 1.52050 1.45974 1.05923 1.09653 1.74888 1.20735 0.80859 0.94724 1.01160 1.20835 0.89048 0.96595 1.01354 1.22230 1.02914 1.02117 0.93693 1.22044 1.03261 1.01221 0.93625 1.20772 0.90613 0.81583 0.75027 1.90713 1.71579 1.32544 1.52440 1.48366 1.07180 1.07720 1.70484 1.22739 0.96307 0.79843 1.03724 1.23232 0.94673 0.97989 1.02687 1.21486 0.86510 0.90220 0.96229 0.92278 1.42421 1.24849 1.48038 1.21679 1.19593 1.03137 1.13849 1.00364 0.90032 1.25590 0.99552 1.03171 0.98494 1.69823 1.23184 1.48063 1.20982 0.85131 0.77076 0.79003 0.78475 1.21108 1.22744 1.19349 1.22272 0.81220 0.98332 1.00028 0.87020 0.86658 0.89184 0.73996 0.93537 0.93461 0.88595 0.88211 0.93139 0.93507 0.89387 0.88060 0.87848 0.88253 0.89441 0.91748 0.79454 0.94053 0.92349 0.92692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.05 10.30 71.24 0.73 -0.32 16 2 C 0.50 9.01 7.94 87.66 0.70 9.71 16 3 O -0.61 -18.90 17.10 -3.04 -0.05 -18.95 16 4 N -0.71 -9.72 4.74 -463.07 -2.20 -11.92 16 5 C 0.15 3.35 3.86 86.38 0.33 3.69 16 6 C -0.07 -1.33 0.50 -52.93 -0.03 -1.36 16 7 C -0.15 -1.71 7.60 71.98 0.55 -1.16 16 8 C -0.14 -1.75 8.17 71.98 0.59 -1.16 16 9 C 0.53 15.35 6.51 87.66 0.57 15.92 16 10 O -0.59 -23.35 16.21 -3.04 -0.05 -23.40 16 11 N -0.61 -16.72 3.32 -811.36 -2.69 -19.41 16 12 C 0.10 1.87 5.09 86.73 0.44 2.32 16 13 C -0.15 -4.05 6.64 31.78 0.21 -3.84 16 14 C 0.17 6.11 3.70 46.46 0.17 6.28 16 15 H 0.06 2.23 8.13 -2.39 -0.02 2.21 16 16 N -0.73 -35.30 5.28 -316.00 -1.67 -36.96 16 17 C -0.24 -12.59 9.98 84.03 0.84 -11.75 16 18 H 0.08 4.07 7.83 -2.91 -0.02 4.05 16 19 C -0.08 -4.23 5.50 84.86 0.47 -3.76 16 20 N -0.97 -58.44 13.06 21.65 0.28 -58.16 16 21 Si 0.97 44.83 29.55 68.60 2.03 46.86 16 22 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 23 H -0.30 -14.18 7.11 99.48 0.71 -13.48 16 24 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 25 C 0.11 3.73 6.56 86.93 0.57 4.30 16 26 H 0.11 0.40 8.14 -2.39 -0.02 0.38 16 27 H 0.11 -0.05 8.14 -2.39 -0.02 -0.07 16 28 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 29 H 0.42 2.01 6.22 -92.71 -0.58 1.43 16 30 H 0.05 1.33 8.05 -2.39 -0.02 1.31 16 31 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.10 0.53 6.56 -2.39 -0.02 0.51 16 33 H 0.10 0.73 4.98 -2.39 -0.01 0.72 16 34 H 0.05 0.77 8.03 -2.39 -0.02 0.75 16 35 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 36 H 0.09 0.85 5.14 -2.39 -0.01 0.84 16 37 H 0.10 0.54 6.72 -2.38 -0.02 0.52 16 38 H 0.10 1.48 5.71 -2.38 -0.01 1.47 16 39 H 0.10 1.40 5.59 -2.39 -0.01 1.39 16 40 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 41 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 42 H 0.37 19.74 7.71 -92.71 -0.72 19.03 16 43 H 0.25 14.72 8.31 -92.71 -0.77 13.95 16 44 H 0.06 2.18 8.01 -2.39 -0.02 2.16 16 45 H 0.05 2.16 7.98 -2.39 -0.02 2.14 16 Total: -1.00 -81.30 354.93 1.52 -79.78 By element: Atomic # 1 Polarization: 23.58 SS G_CDS: -0.28 Total: 23.30 kcal Atomic # 6 Polarization: 12.72 SS G_CDS: 6.14 Total: 18.86 kcal Atomic # 7 Polarization: -120.17 SS G_CDS: -6.27 Total: -126.45 kcal Atomic # 8 Polarization: -42.25 SS G_CDS: -0.10 Total: -42.35 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 2.03 Total: 46.86 kcal Total: -81.30 1.52 -79.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001186258388.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.700 kcal (2) G-P(sol) polarization free energy of solvation -81.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds