Wall clock time and date at job start Tue Mar 31 2020 03:54:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21278 * 120.00146 * 2 1 4 4 N 1.34775 * 119.99819 * 179.97438 * 2 1 3 5 5 C 1.46506 * 119.99944 * 174.83554 * 4 2 1 6 6 C 1.46497 * 120.00153 * 354.83088 * 4 2 1 7 7 C 1.52999 * 109.47180 * 89.99937 * 6 4 2 8 8 C 1.52993 * 109.47353 * 179.97438 * 7 6 4 9 9 C 1.50704 * 109.47422 * 179.97438 * 8 7 6 10 10 O 1.21287 * 119.99766 * 0.02562 * 9 8 7 11 11 N 1.34774 * 120.00161 * 180.27859 * 9 8 7 12 12 C 1.47022 * 125.65029 * 359.75240 * 11 9 8 13 13 C 1.54321 * 107.27212 * 181.02365 * 12 11 9 14 14 C 1.55150 * 102.94230 * 22.19179 * 13 12 11 15 15 H 1.09000 * 111.00510 * 82.57571 * 14 13 12 16 16 N 1.46503 * 111.00616 * 206.38480 * 14 13 12 17 17 C 1.36937 * 120.00234 * 273.54842 * 16 14 13 18 18 H 1.08003 * 119.99788 * 359.97438 * 17 16 14 19 19 C 1.38802 * 120.00332 * 179.97438 * 17 16 14 20 20 N 1.31630 * 120.00077 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 120.00597 * 180.02562 * 19 17 16 22 22 H 1.48505 * 109.46908 * 359.97438 * 21 19 17 23 23 H 1.48502 * 109.47454 * 119.99748 * 21 19 17 24 24 H 1.48503 * 109.47231 * 240.00417 * 21 19 17 25 25 C 1.47424 * 125.64563 * 179.44811 * 11 9 8 26 26 H 1.09001 * 109.47565 * 274.70601 * 1 2 3 27 27 H 1.09005 * 109.46824 * 34.70428 * 1 2 3 28 28 H 1.09001 * 109.47461 * 154.70370 * 1 2 3 29 29 H 1.09001 * 109.46714 * 275.09660 * 5 4 2 30 30 H 1.08993 * 109.46929 * 35.09309 * 5 4 2 31 31 H 1.08999 * 109.47132 * 155.10041 * 5 4 2 32 32 H 1.08999 * 109.47329 * 330.00263 * 6 4 2 33 33 H 1.09005 * 109.47136 * 210.00061 * 6 4 2 34 34 H 1.09007 * 109.46582 * 60.00247 * 7 6 4 35 35 H 1.08997 * 109.47350 * 300.00358 * 7 6 4 36 36 H 1.09007 * 109.46838 * 60.00694 * 8 7 6 37 37 H 1.08996 * 109.47862 * 300.00300 * 8 7 6 38 38 H 1.09006 * 109.88098 * 300.44098 * 12 11 9 39 39 H 1.08998 * 109.88260 * 61.44474 * 12 11 9 40 40 H 1.08999 * 110.72261 * 140.55782 * 13 12 11 41 41 H 1.08995 * 110.71819 * 263.82620 * 13 12 11 42 42 H 0.97006 * 119.99955 * 93.54813 * 16 14 13 43 43 H 0.96997 * 120.00387 * 179.97438 * 20 19 17 44 44 H 1.09005 * 110.36648 * 274.74201 * 25 11 9 45 45 H 1.08996 * 110.37210 * 37.06408 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1808 -1.1672 0.0005 5 6 3.6414 -1.1699 -0.1137 6 6 1.4528 -2.4333 0.1154 7 6 1.0868 -2.9397 -1.2812 8 6 0.3270 -4.2622 -1.1613 9 6 -0.0341 -4.7607 -2.5369 10 8 0.2853 -4.1212 -3.5168 11 7 -0.7163 -5.9144 -2.6781 12 6 -1.1643 -6.7847 -1.5811 13 6 -1.8771 -7.9957 -2.2189 14 6 -1.2953 -8.0236 -3.6569 15 1 -0.3298 -8.5289 -3.6781 16 7 -2.2336 -8.6509 -4.5909 17 6 -2.2310 -10.0105 -4.7544 18 1 -1.5369 -10.6203 -4.1951 19 6 -3.1203 -10.6049 -5.6390 20 7 -3.9659 -9.8617 -6.3210 21 14 -3.1173 -12.4595 -5.8615 22 1 -2.0789 -13.0613 -4.9870 23 1 -4.4496 -13.0042 -5.4958 24 1 -2.8206 -12.7875 -7.2792 25 6 -1.1425 -6.5094 -3.9578 26 1 -0.3634 0.0843 1.0242 27 1 -0.3633 0.8449 -0.5851 28 1 -0.3634 -0.9291 -0.4391 29 1 3.9236 -1.1258 -1.1656 30 1 4.0482 -0.3037 0.4081 31 1 4.0390 -2.0820 0.3313 32 1 0.5431 -2.2780 0.6955 33 1 2.0815 -3.1699 0.6157 34 1 1.9965 -3.0950 -1.8613 35 1 0.4581 -2.2031 -1.7816 36 1 -0.5827 -4.1073 -0.5811 37 1 0.9560 -4.9986 -0.6612 38 1 -0.3051 -7.1230 -1.0018 39 1 -1.8555 -6.2421 -0.9361 40 1 -1.6303 -8.9135 -1.6852 41 1 -2.9556 -7.8401 -2.2421 42 1 -2.8568 -8.1031 -5.0936 43 1 -4.5872 -10.2770 -6.9395 44 1 -2.0953 -6.0853 -4.2748 45 1 -0.3822 -6.3498 -4.7223 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001187450582.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:54:18 Heat of formation + Delta-G solvation = -86.317177 kcal Electronic energy + Delta-G solvation = -23704.705210 eV Core-core repulsion = 20142.331477 eV Total energy + Delta-G solvation = -3562.373733 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.13052 -40.75270 -38.75151 -37.22061 -35.91072 -34.06098 -33.21004 -31.35044 -30.98282 -29.68676 -28.10745 -26.69154 -25.54700 -24.19060 -22.85748 -21.59112 -20.35564 -19.95011 -19.27306 -18.18715 -17.96761 -17.47983 -17.08122 -16.57755 -16.43910 -16.31836 -15.77465 -15.41503 -14.93371 -14.58975 -14.47213 -14.39334 -14.29298 -13.70553 -13.51879 -13.43215 -13.27614 -13.10216 -13.02831 -12.99559 -12.96354 -12.72123 -12.61307 -12.36062 -12.26800 -12.08031 -11.74361 -11.68862 -11.55665 -10.97001 -10.95131 -10.87760 -9.73623 -9.62061 -9.04381 -7.95291 -5.25433 1.49319 1.50297 1.55557 1.59941 1.68687 1.94559 2.17005 2.57504 3.36152 3.54600 3.67074 3.76346 3.93945 3.97827 4.08421 4.13698 4.28700 4.32594 4.38974 4.45105 4.51881 4.52963 4.54767 4.57808 4.66739 4.68999 4.75278 4.81541 4.90444 4.91853 5.01280 5.03250 5.09789 5.24731 5.30134 5.41312 5.45818 5.55659 5.55996 6.25775 6.36671 6.62854 7.12544 7.20228 7.32225 8.04424 8.27671 9.28324 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.044856 B = 0.002209 C = 0.002193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 624.074458 B =12669.707547 C =12762.390704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.501 3.499 3 O -0.603 6.603 4 N -0.617 5.617 5 C 0.079 3.921 6 C 0.110 3.890 7 C -0.121 4.121 8 C -0.120 4.120 9 C 0.515 3.485 10 O -0.599 6.599 11 N -0.615 5.615 12 C 0.108 3.892 13 C -0.147 4.147 14 C 0.163 3.837 15 H 0.060 0.940 16 N -0.732 5.732 17 C -0.236 4.236 18 H 0.082 0.918 19 C -0.077 4.077 20 N -0.971 5.971 21 Si 0.974 3.026 22 H -0.262 1.262 23 H -0.294 1.294 24 H -0.298 1.298 25 C 0.106 3.894 26 H 0.117 0.883 27 H 0.086 0.914 28 H 0.101 0.899 29 H 0.044 0.956 30 H 0.057 0.943 31 H 0.102 0.898 32 H 0.111 0.889 33 H 0.112 0.888 34 H 0.052 0.948 35 H 0.055 0.945 36 H 0.130 0.870 37 H 0.128 0.872 38 H 0.100 0.900 39 H 0.096 0.904 40 H 0.085 0.915 41 H 0.060 0.940 42 H 0.373 0.627 43 H 0.251 0.749 44 H 0.053 0.947 45 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.650 11.955 20.828 25.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.292 3.708 3 O -0.485 6.485 4 N -0.349 5.349 5 C -0.063 4.063 6 C -0.011 4.011 7 C -0.160 4.160 8 C -0.159 4.159 9 C 0.306 3.694 10 O -0.480 6.480 11 N -0.349 5.349 12 C -0.013 4.013 13 C -0.187 4.187 14 C 0.053 3.947 15 H 0.078 0.922 16 N -0.371 5.371 17 C -0.368 4.368 18 H 0.100 0.900 19 C -0.269 4.269 20 N -0.621 5.621 21 Si 0.803 3.197 22 H -0.186 1.186 23 H -0.221 1.221 24 H -0.226 1.226 25 C -0.018 4.018 26 H 0.135 0.865 27 H 0.105 0.895 28 H 0.120 0.880 29 H 0.063 0.937 30 H 0.076 0.924 31 H 0.121 0.879 32 H 0.129 0.871 33 H 0.130 0.870 34 H 0.071 0.929 35 H 0.073 0.927 36 H 0.148 0.852 37 H 0.146 0.854 38 H 0.118 0.882 39 H 0.114 0.886 40 H 0.103 0.897 41 H 0.079 0.921 42 H 0.205 0.795 43 H 0.059 0.941 44 H 0.072 0.928 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 10.256 12.693 20.374 26.104 hybrid contribution -0.474 -0.746 -1.412 1.665 sum 9.782 11.948 18.963 24.455 Atomic orbital electron populations 1.22036 0.89001 1.05858 1.06349 1.21560 0.92257 0.82735 0.74249 1.90679 1.72142 1.33170 1.52551 1.48067 1.07913 1.06935 1.71957 1.21726 0.79430 1.03748 1.01412 1.21924 0.99035 0.84191 0.95988 1.21749 1.00289 0.96001 0.98000 1.21621 1.04261 0.98465 0.91592 1.21385 0.76117 0.78587 0.93281 1.90703 1.56386 1.57511 1.43423 1.48619 1.55082 1.22738 1.08440 1.22252 1.00117 0.90237 0.88724 1.23207 1.00179 0.98196 0.97136 1.21521 0.93027 0.89909 0.90193 0.92248 1.42452 1.41443 1.04290 1.48938 1.19636 1.14444 0.84241 1.18463 0.89992 1.25593 0.99133 1.02262 0.99934 1.69832 1.25260 1.35686 1.31346 0.85069 0.77310 0.80275 0.77056 1.18605 1.22100 1.22577 1.22199 0.98810 0.93801 0.87000 0.86487 0.89483 0.88048 0.93692 0.92380 0.87925 0.87111 0.86994 0.92901 0.92672 0.85240 0.85404 0.88234 0.88578 0.89681 0.92085 0.79505 0.94064 0.92846 0.92812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.94 9.35 71.24 0.67 -1.27 16 2 C 0.50 9.71 7.77 87.66 0.68 10.39 16 3 O -0.60 -17.72 16.73 -3.02 -0.05 -17.77 16 4 N -0.62 -8.79 2.87 -846.76 -2.43 -11.23 16 5 C 0.08 1.09 10.46 127.77 1.34 2.43 16 6 C 0.11 0.73 5.02 86.38 0.43 1.17 16 7 C -0.12 -1.55 4.61 30.59 0.14 -1.41 16 8 C -0.12 -1.29 4.89 29.85 0.15 -1.14 16 9 C 0.51 12.63 7.85 87.66 0.69 13.32 16 10 O -0.60 -21.04 16.24 -3.05 -0.05 -21.09 16 11 N -0.62 -15.60 3.32 -811.34 -2.70 -18.29 16 12 C 0.11 1.95 6.48 86.73 0.56 2.51 16 13 C -0.15 -4.01 6.64 31.78 0.21 -3.80 16 14 C 0.16 5.91 3.70 46.46 0.17 6.08 16 15 H 0.06 2.18 8.13 -2.39 -0.02 2.17 16 16 N -0.73 -35.11 5.28 -316.02 -1.67 -36.78 16 17 C -0.24 -12.43 9.98 84.03 0.84 -11.59 16 18 H 0.08 4.07 7.83 -2.91 -0.02 4.05 16 19 C -0.08 -4.28 5.50 84.86 0.47 -3.81 16 20 N -0.97 -58.27 13.06 21.65 0.28 -57.99 16 21 Si 0.97 44.59 29.55 68.60 2.03 46.62 16 22 H -0.26 -11.07 7.11 99.48 0.71 -10.36 16 23 H -0.29 -13.47 7.11 99.48 0.71 -12.76 16 24 H -0.30 -13.90 7.11 99.48 0.71 -13.19 16 25 C 0.11 3.63 6.53 86.93 0.57 4.19 16 26 H 0.12 0.76 8.14 -2.39 -0.02 0.74 16 27 H 0.09 1.12 8.14 -2.38 -0.02 1.10 16 28 H 0.10 0.78 5.36 -2.39 -0.01 0.77 16 29 H 0.04 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.06 0.98 7.51 -2.39 -0.02 0.97 16 31 H 0.10 0.73 7.83 -2.39 -0.02 0.71 16 32 H 0.11 0.20 6.70 -2.39 -0.02 0.18 16 33 H 0.11 0.21 7.86 -2.38 -0.02 0.19 16 34 H 0.05 0.94 8.10 -2.38 -0.02 0.92 16 35 H 0.05 0.94 7.00 -2.39 -0.02 0.92 16 36 H 0.13 0.60 8.14 -2.38 -0.02 0.58 16 37 H 0.13 0.64 8.14 -2.39 -0.02 0.62 16 38 H 0.10 1.18 8.14 -2.38 -0.02 1.16 16 39 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 40 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 41 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 42 H 0.37 19.63 7.71 -92.70 -0.72 18.91 16 43 H 0.25 14.62 8.31 -92.71 -0.77 13.85 16 44 H 0.05 1.96 8.01 -2.38 -0.02 1.94 16 45 H 0.05 2.03 8.03 -2.39 -0.02 2.01 16 Total: -1.00 -80.71 368.85 2.58 -78.13 By element: Atomic # 1 Polarization: 21.08 SS G_CDS: 0.26 Total: 21.34 kcal Atomic # 6 Polarization: 10.16 SS G_CDS: 6.91 Total: 17.07 kcal Atomic # 7 Polarization: -117.77 SS G_CDS: -6.52 Total: -124.29 kcal Atomic # 8 Polarization: -38.77 SS G_CDS: -0.10 Total: -38.87 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 2.03 Total: 46.62 kcal Total: -80.71 2.58 -78.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001187450582.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.186 kcal (2) G-P(sol) polarization free energy of solvation -80.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.131 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds