Wall clock time and date at job start Tue Mar 31 2020 03:46:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46502 * 109.47413 * 2 1 4 4 C 1.34775 * 119.99919 * 179.97438 * 3 2 1 5 5 O 1.21269 * 120.00223 * 0.02562 * 4 3 2 6 6 C 1.50701 * 119.99629 * 179.97438 * 4 3 2 7 7 C 1.52996 * 109.47122 * 180.02562 * 6 4 3 8 8 C 1.50701 * 109.47122 * 180.02562 * 7 6 4 9 9 O 1.21269 * 120.00148 * 0.02562 * 8 7 6 10 10 N 1.34778 * 119.99997 * 179.97438 * 8 7 6 11 11 C 1.47431 * 125.64832 * 0.02562 * 10 8 7 12 12 C 1.54908 * 104.83367 * 204.09147 * 11 10 8 13 13 C 1.55157 * 101.58138 * 322.99130 * 12 11 10 14 14 H 1.08992 * 110.72263 * 277.13577 * 13 12 11 15 15 N 1.46502 * 110.71756 * 154.04043 * 13 12 11 16 16 C 1.46499 * 120.00265 * 301.44940 * 15 13 12 17 17 C 1.36938 * 119.99745 * 121.45612 * 15 13 12 18 18 H 1.07996 * 120.00105 * 23.48312 * 17 15 13 19 19 C 1.38816 * 120.00005 * 203.48442 * 17 15 13 20 20 N 1.31624 * 119.99641 * 15.10470 * 19 17 15 21 21 Si 1.86798 * 120.00028 * 195.10151 * 19 17 15 22 22 H 1.48499 * 109.47224 * 90.00086 * 21 19 17 23 23 H 1.48504 * 109.47000 * 210.00187 * 21 19 17 24 24 H 1.48499 * 109.46951 * 329.99889 * 21 19 17 25 25 C 1.47019 * 125.65060 * 179.71883 * 10 8 7 26 26 H 1.09002 * 109.47301 * 300.00014 * 1 2 3 27 27 H 1.08999 * 109.47448 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46981 * 59.99837 * 1 2 3 29 29 H 1.09004 * 109.46981 * 120.00163 * 2 1 3 30 30 H 1.09002 * 109.47301 * 239.99986 * 2 1 3 31 31 H 0.96998 * 119.99187 * 359.97438 * 3 2 1 32 32 H 1.09004 * 109.47372 * 300.00174 * 6 4 3 33 33 H 1.09002 * 109.46998 * 60.00051 * 6 4 3 34 34 H 1.09004 * 109.46981 * 300.00220 * 7 6 4 35 35 H 1.09002 * 109.47301 * 60.00043 * 7 6 4 36 36 H 1.09005 * 110.36516 * 322.93411 * 11 10 8 37 37 H 1.09004 * 110.36521 * 85.25037 * 11 10 8 38 38 H 1.08999 * 110.99988 * 81.06503 * 12 11 10 39 39 H 1.08999 * 111.00527 * 204.91531 * 12 11 10 40 40 H 1.09004 * 109.46845 * 95.21540 * 16 15 13 41 41 H 1.08995 * 109.47260 * 215.21429 * 16 15 13 42 42 H 1.08999 * 109.47339 * 335.21816 * 16 15 13 43 43 H 0.96997 * 119.99627 * 180.02562 * 20 19 17 44 44 H 1.08997 * 109.87895 * 298.39256 * 25 10 8 45 45 H 1.08998 * 109.88052 * 59.55837 * 25 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 3.3434 1.6274 0.0005 5 8 4.1315 0.7056 0.0005 6 6 3.8458 3.0482 -0.0001 7 6 5.3757 3.0482 0.0001 8 6 5.8781 4.4691 0.0001 9 8 5.0901 5.3908 0.0005 10 7 7.2032 4.7153 0.0007 11 6 8.2669 3.6945 0.0009 12 6 9.4993 4.4060 0.6129 13 6 9.3559 5.8358 0.0278 14 1 9.7698 5.8837 -0.9794 15 7 10.0029 6.8197 0.8993 16 6 9.5750 6.9568 2.2937 17 6 11.0077 7.6114 0.4104 18 1 11.0786 7.8003 -0.6505 19 6 11.9351 8.1711 1.2786 20 7 12.0402 7.7187 2.5102 21 14 13.0339 9.5661 0.6990 22 1 12.3677 10.8656 0.9686 23 1 14.3273 9.5124 1.4266 24 1 13.2801 9.4291 -0.7590 25 6 7.8273 6.0464 -0.0050 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.3880 2.1184 -0.0004 32 1 3.4829 3.5616 -0.8905 33 1 3.4820 3.5626 0.8895 34 1 5.7390 2.5347 0.8903 35 1 5.7392 2.5340 -0.8897 36 1 7.9757 2.8433 0.6165 37 1 8.4824 3.3711 -1.0175 38 1 9.4409 4.4215 1.7012 39 1 10.4258 3.9385 0.2795 40 1 10.2220 6.3560 2.9330 41 1 9.6394 8.0030 2.5923 42 1 8.5454 6.6131 2.3932 43 1 12.6879 8.1100 3.1169 44 1 7.5446 6.5845 -0.9098 45 1 7.5132 6.6069 0.8755 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001189345899.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:46:55 Heat of formation + Delta-G solvation = -77.673293 kcal Electronic energy + Delta-G solvation = -23965.938707 eV Core-core repulsion = 20403.939801 eV Total energy + Delta-G solvation = -3561.998906 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.27943 -40.56031 -38.92118 -36.53121 -36.31086 -34.03977 -33.35577 -31.54272 -31.16253 -29.51617 -28.07898 -26.82361 -24.88941 -23.81269 -23.30395 -21.48969 -20.86066 -20.07990 -18.94347 -18.63589 -17.65655 -17.39169 -17.02619 -16.85713 -16.47884 -16.20358 -15.78948 -15.29357 -15.11236 -14.85224 -14.50506 -14.37745 -14.25041 -13.78127 -13.64789 -13.32996 -13.14960 -12.96755 -12.91926 -12.84942 -12.67609 -12.56041 -12.37171 -12.36239 -12.25743 -12.16955 -12.04382 -11.82068 -11.46741 -10.93764 -10.93276 -10.64420 -10.08583 -9.63804 -8.81165 -7.84387 -5.33559 1.47511 1.49602 1.57649 1.60737 1.61765 1.87489 2.33986 2.51951 3.27717 3.46553 3.57355 3.78371 3.87551 4.00254 4.10238 4.14678 4.23420 4.24361 4.29433 4.35560 4.47281 4.53641 4.59972 4.69603 4.77693 4.83937 4.93383 4.94475 4.97757 5.02270 5.07206 5.16055 5.26194 5.27803 5.33101 5.40032 5.49238 5.64368 5.66939 6.31077 6.52768 6.57209 7.10231 7.13605 7.23873 7.82874 8.28315 9.18987 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.049424 B = 0.002374 C = 0.002345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 566.386771 B =11791.852429 C =11937.604152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.109 3.891 3 N -0.722 5.722 4 C 0.515 3.485 5 O -0.581 6.581 6 C -0.119 4.119 7 C -0.110 4.110 8 C 0.523 3.477 9 O -0.586 6.586 10 N -0.614 5.614 11 C 0.107 3.893 12 C -0.143 4.143 13 C 0.165 3.835 14 H 0.082 0.918 15 N -0.602 5.602 16 C 0.178 3.822 17 C -0.267 4.267 18 H 0.075 0.925 19 C -0.051 4.051 20 N -0.935 5.935 21 Si 0.969 3.031 22 H -0.290 1.290 23 H -0.295 1.295 24 H -0.266 1.266 25 C 0.098 3.902 26 H 0.068 0.932 27 H 0.083 0.917 28 H 0.069 0.931 29 H 0.056 0.944 30 H 0.057 0.943 31 H 0.416 0.584 32 H 0.110 0.890 33 H 0.107 0.893 34 H 0.105 0.895 35 H 0.110 0.890 36 H 0.097 0.903 37 H 0.094 0.906 38 H 0.056 0.944 39 H 0.086 0.914 40 H 0.011 0.989 41 H 0.011 0.989 42 H 0.024 0.976 43 H 0.248 0.752 44 H 0.058 0.942 45 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.704 -15.273 -6.138 26.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.014 4.014 3 N -0.375 5.375 4 C 0.303 3.697 5 O -0.461 6.461 6 C -0.159 4.159 7 C -0.150 4.150 8 C 0.314 3.686 9 O -0.467 6.467 10 N -0.347 5.347 11 C -0.015 4.015 12 C -0.183 4.183 13 C 0.056 3.944 14 H 0.101 0.899 15 N -0.323 5.323 16 C 0.033 3.967 17 C -0.397 4.397 18 H 0.092 0.908 19 C -0.246 4.246 20 N -0.581 5.581 21 Si 0.797 3.203 22 H -0.217 1.217 23 H -0.222 1.222 24 H -0.190 1.190 25 C -0.027 4.027 26 H 0.087 0.913 27 H 0.102 0.898 28 H 0.088 0.912 29 H 0.074 0.926 30 H 0.076 0.924 31 H 0.253 0.747 32 H 0.128 0.872 33 H 0.125 0.875 34 H 0.123 0.877 35 H 0.129 0.871 36 H 0.115 0.885 37 H 0.112 0.888 38 H 0.075 0.925 39 H 0.105 0.895 40 H 0.030 0.970 41 H 0.029 0.971 42 H 0.042 0.958 43 H 0.058 0.942 44 H 0.076 0.924 45 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -20.540 -15.416 -6.011 26.376 hybrid contribution 0.683 1.374 0.230 1.552 sum -19.857 -14.043 -5.782 24.999 Atomic orbital electron populations 1.21961 0.92066 1.04140 1.03270 1.21384 0.96124 0.82411 1.01502 1.46039 1.06731 1.09972 1.74772 1.20833 0.82697 0.91378 0.74838 1.90694 1.56381 1.47658 1.51354 1.21326 0.94949 0.92934 1.06667 1.21292 0.95939 0.91240 1.06490 1.20878 0.80217 0.92336 0.75195 1.90662 1.55262 1.48167 1.52643 1.48598 1.05602 1.08518 1.72021 1.22504 0.85628 0.90868 1.02526 1.23221 0.98058 0.96612 1.00433 1.21482 0.89332 0.88729 0.94828 0.89947 1.44022 1.39219 1.40769 1.08314 1.20456 0.93443 0.97843 0.84941 1.19556 1.04032 1.22790 0.93273 0.90768 1.25784 0.99272 1.02717 0.96842 1.70229 1.37880 1.42911 1.07051 0.85241 0.77623 0.79334 0.78082 1.21680 1.22185 1.19026 1.22359 0.95012 0.84717 1.00583 0.91270 0.89844 0.91163 0.92554 0.92412 0.74721 0.87167 0.87513 0.87667 0.87136 0.88472 0.88839 0.92482 0.89545 0.97044 0.97051 0.95773 0.94234 0.92413 0.93438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.86 10.03 71.98 0.72 -0.14 16 2 C 0.11 1.29 6.39 86.38 0.55 1.84 16 3 N -0.72 -9.20 5.56 -463.07 -2.57 -11.77 16 4 C 0.52 9.75 7.83 87.66 0.69 10.43 16 5 O -0.58 -15.41 15.98 -3.00 -0.05 -15.46 16 6 C -0.12 -2.10 4.99 29.85 0.15 -1.95 16 7 C -0.11 -2.30 4.00 29.85 0.12 -2.18 16 8 C 0.52 15.19 7.85 87.66 0.69 15.88 16 9 O -0.59 -20.98 16.31 -3.00 -0.05 -21.03 16 10 N -0.61 -18.47 3.33 -811.77 -2.70 -21.17 16 11 C 0.11 2.61 6.69 86.85 0.58 3.19 16 12 C -0.14 -4.62 6.65 31.99 0.21 -4.41 16 13 C 0.16 6.39 3.42 46.18 0.16 6.55 16 14 H 0.08 3.11 7.93 -2.39 -0.02 3.09 16 15 N -0.60 -29.64 2.93 -696.13 -2.04 -31.68 16 16 C 0.18 8.90 7.70 127.77 0.98 9.89 16 17 C -0.27 -14.37 9.59 84.03 0.81 -13.57 16 18 H 0.07 3.85 7.85 -2.91 -0.02 3.83 16 19 C -0.05 -2.81 5.06 84.86 0.43 -2.38 16 20 N -0.93 -54.96 10.86 21.65 0.24 -54.73 16 21 Si 0.97 44.78 29.58 68.60 2.03 46.81 16 22 H -0.29 -13.38 7.11 99.48 0.71 -12.68 16 23 H -0.30 -13.73 7.11 99.48 0.71 -13.02 16 24 H -0.27 -11.58 7.11 99.48 0.71 -10.88 16 25 C 0.10 3.59 6.41 86.73 0.56 4.14 16 26 H 0.07 0.32 8.14 -2.39 -0.02 0.30 16 27 H 0.08 0.34 8.14 -2.39 -0.02 0.32 16 28 H 0.07 0.31 8.14 -2.38 -0.02 0.29 16 29 H 0.06 0.80 8.14 -2.38 -0.02 0.78 16 30 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.42 2.97 8.47 -92.71 -0.79 2.18 16 32 H 0.11 1.78 8.10 -2.38 -0.02 1.76 16 33 H 0.11 1.81 8.10 -2.39 -0.02 1.79 16 34 H 0.11 2.14 7.80 -2.38 -0.02 2.12 16 35 H 0.11 2.11 8.10 -2.39 -0.02 2.09 16 36 H 0.10 1.94 7.48 -2.38 -0.02 1.93 16 37 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 38 H 0.06 2.07 7.28 -2.39 -0.02 2.05 16 39 H 0.09 2.66 8.14 -2.39 -0.02 2.64 16 40 H 0.01 0.61 7.32 -2.39 -0.02 0.60 16 41 H 0.01 0.59 7.43 -2.39 -0.02 0.57 16 42 H 0.02 1.07 6.30 -2.39 -0.02 1.06 16 43 H 0.25 14.23 8.31 -92.71 -0.77 13.46 16 44 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 45 H 0.05 1.97 6.15 -2.39 -0.01 1.95 16 Total: -1.00 -72.47 364.24 1.69 -70.79 By element: Atomic # 1 Polarization: 10.76 SS G_CDS: 0.19 Total: 10.95 kcal Atomic # 6 Polarization: 20.65 SS G_CDS: 6.64 Total: 27.29 kcal Atomic # 7 Polarization: -112.27 SS G_CDS: -7.08 Total: -119.35 kcal Atomic # 8 Polarization: -36.39 SS G_CDS: -0.10 Total: -36.48 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.81 kcal Total: -72.47 1.69 -70.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001189345899.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.887 kcal (2) G-P(sol) polarization free energy of solvation -72.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds