Wall clock time and date at job start Tue Mar 31 2020 03:54:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.21287 * 120.00084 * 2 1 4 4 N 1.34781 * 120.00093 * 179.73144 * 2 1 3 5 5 C 1.46503 * 120.00171 * 180.27132 * 4 2 1 6 6 C 1.52998 * 109.47060 * 295.27325 * 5 4 2 7 7 C 1.52997 * 109.46677 * 55.27028 * 5 4 2 8 8 C 1.50699 * 109.47102 * 175.27280 * 5 4 2 9 9 O 1.21277 * 119.99977 * 134.86095 * 8 5 4 10 10 N 1.34776 * 119.99517 * 314.85852 * 8 5 4 11 11 C 1.47428 * 125.64242 * 184.03815 * 10 8 5 12 12 C 1.55129 * 104.71805 * 155.81935 * 11 10 8 13 13 C 1.55154 * 101.48918 * 37.29956 * 12 11 10 14 14 H 1.08993 * 110.72452 * 82.68878 * 13 12 11 15 15 N 1.46494 * 110.87131 * 205.90126 * 13 12 11 16 16 C 1.46501 * 120.00632 * 53.60386 * 15 13 12 17 17 C 1.36943 * 119.99532 * 233.60591 * 15 13 12 18 18 H 1.07994 * 120.00337 * 24.24219 * 17 15 13 19 19 C 1.38811 * 119.99950 * 204.24054 * 17 15 13 20 20 N 1.31622 * 120.00094 * 15.38584 * 19 17 15 21 21 Si 1.86803 * 120.00213 * 195.39087 * 19 17 15 22 22 H 1.48496 * 109.47192 * 89.99607 * 21 19 17 23 23 H 1.48502 * 109.47364 * 210.00182 * 21 19 17 24 24 H 1.48499 * 109.46821 * 330.00205 * 21 19 17 25 25 C 1.47022 * 125.65331 * 4.34851 * 10 8 5 26 26 H 1.09000 * 109.47357 * 359.97438 * 1 2 3 27 27 H 1.09004 * 109.47225 * 119.99558 * 1 2 3 28 28 H 1.08999 * 109.47081 * 239.99729 * 1 2 3 29 29 H 0.97004 * 119.99957 * 0.27398 * 4 2 1 30 30 H 1.09002 * 109.47444 * 59.99853 * 6 5 4 31 31 H 1.09002 * 109.47060 * 179.97438 * 6 5 4 32 32 H 1.09001 * 109.47221 * 299.99776 * 6 5 4 33 33 H 1.08993 * 109.47452 * 60.00445 * 7 5 4 34 34 H 1.09002 * 109.46697 * 180.02562 * 7 5 4 35 35 H 1.08997 * 109.47676 * 300.00083 * 7 5 4 36 36 H 1.08999 * 110.36967 * 274.74803 * 11 10 8 37 37 H 1.09000 * 110.36838 * 37.07505 * 11 10 8 38 38 H 1.08998 * 111.19194 * 279.18679 * 12 11 10 39 39 H 1.09004 * 110.93546 * 155.29307 * 12 11 10 40 40 H 1.08998 * 109.46714 * 93.95250 * 16 15 13 41 41 H 1.09000 * 109.47186 * 213.95373 * 16 15 13 42 42 H 1.09001 * 109.46970 * 333.95411 * 16 15 13 43 43 H 0.97001 * 120.00142 * 179.97438 * 20 19 17 44 44 H 1.08991 * 109.88376 * 300.43969 * 25 10 8 45 45 H 1.09004 * 109.88007 * 61.45278 * 25 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1672 0.0055 5 6 3.6459 -1.1672 0.0115 6 6 4.1612 -0.5544 -1.2923 7 6 4.1509 -0.3427 1.1972 8 6 4.1477 -2.5829 0.1339 9 8 5.0513 -2.9696 -0.5767 10 7 3.5924 -3.4192 1.0331 11 6 4.0383 -4.7957 1.3160 12 6 3.5477 -5.0800 2.7599 13 6 2.1769 -4.3534 2.7693 14 1 1.4038 -4.9827 2.3286 15 7 1.8062 -3.9559 4.1297 16 6 2.7335 -3.1615 4.9392 17 6 0.5928 -4.3269 4.6447 18 1 0.0840 -5.1964 4.2555 19 6 0.0166 -3.5854 5.6669 20 7 0.4647 -2.3776 5.9371 21 14 -1.3947 -4.3015 6.6594 22 1 -0.8534 -5.0343 7.8320 23 1 -2.2786 -3.2035 7.1267 24 1 -2.1740 -5.2362 5.8083 25 6 2.4377 -3.1123 1.8898 26 1 -0.3634 1.0276 0.0005 27 1 -0.3634 -0.5138 -0.8900 28 1 -0.3633 -0.5139 0.8899 29 1 1.6959 -2.0073 0.0054 30 1 3.7983 0.4696 -1.3809 31 1 5.2513 -0.5540 -1.2876 32 1 3.8014 -1.1418 -2.1370 33 1 3.7839 -0.7792 2.1260 34 1 5.2409 -0.3423 1.2014 35 1 3.7880 0.6813 1.1086 36 1 3.5829 -5.4939 0.6137 37 1 5.1253 -4.8603 1.2655 38 1 4.2239 -4.6485 3.4980 39 1 3.4238 -6.1503 2.9255 40 1 2.4982 -2.1031 4.8275 41 1 2.6371 -3.4465 5.9868 42 1 3.7550 -3.3438 4.6055 43 1 0.0619 -1.8593 6.6512 44 1 2.6620 -2.2519 2.5201 45 1 1.5639 -2.9021 1.2729 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192888835.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:54:26 Heat of formation + Delta-G solvation = -32.578613 kcal Electronic energy + Delta-G solvation = -26181.133952 eV Core-core repulsion = 22621.090498 eV Total energy + Delta-G solvation = -3560.043454 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.83157 -39.15684 -37.66746 -35.45218 -34.84198 -32.10161 -31.69276 -30.02589 -28.93500 -27.98445 -27.15070 -26.13952 -24.60736 -23.11962 -21.81673 -20.06436 -19.43867 -19.38211 -17.47482 -17.08786 -16.69629 -15.82957 -15.64573 -15.15060 -14.95235 -14.73272 -14.14217 -13.84539 -13.50592 -13.29332 -13.12823 -12.85022 -12.73894 -12.58785 -12.41428 -12.33545 -12.11319 -11.98072 -11.79898 -11.61945 -11.51686 -11.17745 -11.03474 -10.89900 -10.67547 -10.58600 -10.37512 -10.09419 -9.96655 -9.88318 -9.34996 -9.11655 -8.67754 -8.45699 -6.92501 -5.88164 -3.36890 2.45568 2.68709 3.05494 3.29531 3.34642 3.36937 3.37831 4.31677 4.44128 4.80600 4.95379 5.03536 5.06538 5.16507 5.24588 5.29879 5.39978 5.43985 5.50452 5.61709 5.67041 5.75728 5.79159 5.86758 5.88067 5.92776 5.98085 6.11080 6.22302 6.23464 6.34201 6.39262 6.44084 6.51622 6.69258 6.75085 7.19048 7.46628 7.56012 7.64265 7.67526 8.14643 8.23731 8.26965 9.06204 9.68800 10.18196 11.15902 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.015647 B = 0.005298 C = 0.004367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1789.073338 B = 5284.031832 C = 6409.990434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.519 3.481 3 O -0.543 6.543 4 N -0.725 5.725 5 C 0.166 3.834 6 C -0.143 4.143 7 C -0.166 4.166 8 C 0.528 3.472 9 O -0.541 6.541 10 N -0.610 5.610 11 C 0.108 3.892 12 C -0.154 4.154 13 C 0.172 3.828 14 H 0.080 0.920 15 N -0.582 5.582 16 C 0.156 3.844 17 C -0.266 4.266 18 H 0.070 0.930 19 C 0.009 3.991 20 N -0.899 5.899 21 Si 0.905 3.095 22 H -0.287 1.287 23 H -0.291 1.291 24 H -0.279 1.279 25 C 0.074 3.926 26 H 0.092 0.908 27 H 0.085 0.915 28 H 0.095 0.905 29 H 0.404 0.596 30 H 0.078 0.922 31 H 0.072 0.928 32 H 0.057 0.943 33 H 0.067 0.933 34 H 0.065 0.935 35 H 0.096 0.904 36 H 0.065 0.935 37 H 0.071 0.929 38 H 0.078 0.922 39 H 0.079 0.921 40 H 0.031 0.969 41 H 0.042 0.958 42 H 0.004 0.996 43 H 0.255 0.745 44 H 0.080 0.920 45 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.702 0.076 -10.461 10.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.307 3.693 3 O -0.420 6.420 4 N -0.383 5.383 5 C 0.077 3.923 6 C -0.202 4.202 7 C -0.224 4.224 8 C 0.315 3.685 9 O -0.417 6.417 10 N -0.343 5.343 11 C -0.014 4.014 12 C -0.194 4.194 13 C 0.062 3.938 14 H 0.098 0.902 15 N -0.303 5.303 16 C 0.012 3.988 17 C -0.396 4.396 18 H 0.088 0.912 19 C -0.191 4.191 20 N -0.543 5.543 21 Si 0.735 3.265 22 H -0.214 1.214 23 H -0.217 1.217 24 H -0.204 1.204 25 C -0.051 4.051 26 H 0.111 0.889 27 H 0.104 0.896 28 H 0.114 0.886 29 H 0.243 0.757 30 H 0.097 0.903 31 H 0.091 0.909 32 H 0.076 0.924 33 H 0.086 0.914 34 H 0.084 0.916 35 H 0.114 0.886 36 H 0.084 0.916 37 H 0.089 0.911 38 H 0.096 0.904 39 H 0.097 0.903 40 H 0.050 0.950 41 H 0.061 0.939 42 H 0.023 0.977 43 H 0.065 0.935 44 H 0.098 0.902 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 3.571 0.795 -10.714 11.321 hybrid contribution -1.086 -0.729 0.717 1.491 sum 2.485 0.066 -9.997 10.301 Atomic orbital electron populations 1.21952 0.91437 1.05607 1.04641 1.20779 0.90594 0.83174 0.74732 1.90634 1.70518 1.31486 1.49378 1.46518 1.06023 1.09580 1.76196 1.20482 0.80670 0.92451 0.98684 1.21976 1.01998 1.01716 0.94469 1.22266 1.01388 1.02525 0.96173 1.20216 0.82840 0.86180 0.79275 1.90684 1.30726 1.76615 1.43706 1.48645 1.32612 1.14654 1.38433 1.22275 0.99920 0.82403 0.96851 1.23394 0.99897 1.01592 0.94470 1.21377 0.94131 0.91959 0.86358 0.90204 1.43881 1.16460 1.62068 1.07842 1.20813 0.88041 0.95394 0.94578 1.19187 0.96435 1.06998 1.16936 0.91242 1.25051 0.98210 0.94957 1.00839 1.70063 1.43485 1.08760 1.31962 0.86264 0.81726 0.78105 0.80450 1.21388 1.21715 1.20389 1.23303 0.86086 1.02861 0.92845 0.88924 0.89602 0.88639 0.75721 0.90282 0.90928 0.92406 0.91446 0.91611 0.88575 0.91635 0.91059 0.90388 0.90290 0.95039 0.93899 0.97729 0.93520 0.90180 0.92330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.81 10.32 36.00 0.37 -1.44 16 2 C 0.52 7.06 7.36 -10.98 -0.08 6.98 16 3 O -0.54 -8.97 13.31 5.55 0.07 -8.90 16 4 N -0.73 -9.48 4.01 -48.68 -0.20 -9.68 16 5 C 0.17 2.39 0.67 -132.97 -0.09 2.30 16 6 C -0.14 -1.97 7.87 37.16 0.29 -1.68 16 7 C -0.17 -2.46 8.26 37.16 0.31 -2.16 16 8 C 0.53 8.37 6.65 -10.99 -0.07 8.29 16 9 O -0.54 -9.87 16.28 5.56 0.09 -9.78 16 10 N -0.61 -9.19 3.30 -170.38 -0.56 -9.75 16 11 C 0.11 1.51 6.90 -2.41 -0.02 1.50 16 12 C -0.15 -2.31 6.61 -24.47 -0.16 -2.47 16 13 C 0.17 3.02 3.43 -66.10 -0.23 2.79 16 14 H 0.08 1.37 7.93 -51.93 -0.41 0.96 16 15 N -0.58 -12.88 2.93 -171.39 -0.50 -13.38 16 16 C 0.16 3.50 7.86 59.85 0.47 3.97 16 17 C -0.27 -6.60 9.58 -15.06 -0.14 -6.75 16 18 H 0.07 1.68 7.86 -52.49 -0.41 1.27 16 19 C 0.01 0.24 5.04 -17.43 -0.09 0.15 16 20 N -0.90 -24.37 10.93 55.49 0.61 -23.77 16 21 Si 0.90 20.41 29.58 -169.99 -5.03 15.38 16 22 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 23 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 24 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 25 C 0.07 1.18 5.13 -3.06 -0.02 1.16 16 26 H 0.09 0.92 8.12 -51.93 -0.42 0.50 16 27 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16 28 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 29 H 0.40 4.82 5.63 -40.82 -0.23 4.59 16 30 H 0.08 1.11 6.52 -51.93 -0.34 0.78 16 31 H 0.07 0.99 7.94 -51.93 -0.41 0.58 16 32 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.07 1.08 6.19 -51.93 -0.32 0.76 16 34 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.10 1.52 5.84 -51.93 -0.30 1.22 16 36 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 37 H 0.07 1.01 8.08 -51.93 -0.42 0.59 16 38 H 0.08 1.27 6.06 -51.93 -0.31 0.95 16 39 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 40 H 0.03 0.77 7.28 -51.93 -0.38 0.39 16 41 H 0.04 1.05 7.41 -51.93 -0.38 0.66 16 42 H 0.00 0.09 6.03 -51.93 -0.31 -0.23 16 43 H 0.25 6.77 8.31 -40.82 -0.34 6.43 16 44 H 0.08 1.46 5.26 -51.93 -0.27 1.19 16 45 H 0.06 0.85 5.61 -51.93 -0.29 0.56 16 LS Contribution 346.28 15.07 5.22 5.22 Total: -1.00 -29.57 346.28 -6.65 -36.22 By element: Atomic # 1 Polarization: 12.68 SS G_CDS: -6.90 Total: 5.79 kcal Atomic # 6 Polarization: 12.11 SS G_CDS: 0.55 Total: 12.65 kcal Atomic # 7 Polarization: -55.93 SS G_CDS: -0.65 Total: -56.58 kcal Atomic # 8 Polarization: -18.84 SS G_CDS: 0.16 Total: -18.68 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.03 Total: 15.38 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -29.57 -6.65 -36.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192888835.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.641 kcal (2) G-P(sol) polarization free energy of solvation -29.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds