Wall clock time and date at job start Tue Mar 31 2020 03:54:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.21287 * 120.00084 * 2 1 4 4 N 1.34781 * 120.00093 * 179.73144 * 2 1 3 5 5 C 1.46503 * 120.00171 * 180.27132 * 4 2 1 6 6 C 1.52998 * 109.47060 * 295.27325 * 5 4 2 7 7 C 1.52997 * 109.46677 * 55.27028 * 5 4 2 8 8 C 1.50699 * 109.47102 * 175.27280 * 5 4 2 9 9 O 1.21277 * 119.99977 * 134.86095 * 8 5 4 10 10 N 1.34776 * 119.99517 * 314.85852 * 8 5 4 11 11 C 1.47428 * 125.64242 * 184.03815 * 10 8 5 12 12 C 1.55129 * 104.71805 * 155.81935 * 11 10 8 13 13 C 1.55154 * 101.48918 * 37.29956 * 12 11 10 14 14 H 1.08993 * 110.72452 * 82.68878 * 13 12 11 15 15 N 1.46494 * 110.87131 * 205.90126 * 13 12 11 16 16 C 1.46501 * 120.00632 * 53.60386 * 15 13 12 17 17 C 1.36943 * 119.99532 * 233.60591 * 15 13 12 18 18 H 1.07994 * 120.00337 * 24.24219 * 17 15 13 19 19 C 1.38811 * 119.99950 * 204.24054 * 17 15 13 20 20 N 1.31622 * 120.00094 * 15.38584 * 19 17 15 21 21 Si 1.86803 * 120.00213 * 195.39087 * 19 17 15 22 22 H 1.48496 * 109.47192 * 89.99607 * 21 19 17 23 23 H 1.48502 * 109.47364 * 210.00182 * 21 19 17 24 24 H 1.48499 * 109.46821 * 330.00205 * 21 19 17 25 25 C 1.47022 * 125.65331 * 4.34851 * 10 8 5 26 26 H 1.09000 * 109.47357 * 359.97438 * 1 2 3 27 27 H 1.09004 * 109.47225 * 119.99558 * 1 2 3 28 28 H 1.08999 * 109.47081 * 239.99729 * 1 2 3 29 29 H 0.97004 * 119.99957 * 0.27398 * 4 2 1 30 30 H 1.09002 * 109.47444 * 59.99853 * 6 5 4 31 31 H 1.09002 * 109.47060 * 179.97438 * 6 5 4 32 32 H 1.09001 * 109.47221 * 299.99776 * 6 5 4 33 33 H 1.08993 * 109.47452 * 60.00445 * 7 5 4 34 34 H 1.09002 * 109.46697 * 180.02562 * 7 5 4 35 35 H 1.08997 * 109.47676 * 300.00083 * 7 5 4 36 36 H 1.08999 * 110.36967 * 274.74803 * 11 10 8 37 37 H 1.09000 * 110.36838 * 37.07505 * 11 10 8 38 38 H 1.08998 * 111.19194 * 279.18679 * 12 11 10 39 39 H 1.09004 * 110.93546 * 155.29307 * 12 11 10 40 40 H 1.08998 * 109.46714 * 93.95250 * 16 15 13 41 41 H 1.09000 * 109.47186 * 213.95373 * 16 15 13 42 42 H 1.09001 * 109.46970 * 333.95411 * 16 15 13 43 43 H 0.97001 * 120.00142 * 179.97438 * 20 19 17 44 44 H 1.08991 * 109.88376 * 300.43969 * 25 10 8 45 45 H 1.09004 * 109.88007 * 61.45278 * 25 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1672 0.0055 5 6 3.6459 -1.1672 0.0115 6 6 4.1612 -0.5544 -1.2923 7 6 4.1509 -0.3427 1.1972 8 6 4.1477 -2.5829 0.1339 9 8 5.0513 -2.9696 -0.5767 10 7 3.5924 -3.4192 1.0331 11 6 4.0383 -4.7957 1.3160 12 6 3.5477 -5.0800 2.7599 13 6 2.1769 -4.3534 2.7693 14 1 1.4038 -4.9827 2.3286 15 7 1.8062 -3.9559 4.1297 16 6 2.7335 -3.1615 4.9392 17 6 0.5928 -4.3269 4.6447 18 1 0.0840 -5.1964 4.2555 19 6 0.0166 -3.5854 5.6669 20 7 0.4647 -2.3776 5.9371 21 14 -1.3947 -4.3015 6.6594 22 1 -0.8534 -5.0343 7.8320 23 1 -2.2786 -3.2035 7.1267 24 1 -2.1740 -5.2362 5.8083 25 6 2.4377 -3.1123 1.8898 26 1 -0.3634 1.0276 0.0005 27 1 -0.3634 -0.5138 -0.8900 28 1 -0.3633 -0.5139 0.8899 29 1 1.6959 -2.0073 0.0054 30 1 3.7983 0.4696 -1.3809 31 1 5.2513 -0.5540 -1.2876 32 1 3.8014 -1.1418 -2.1370 33 1 3.7839 -0.7792 2.1260 34 1 5.2409 -0.3423 1.2014 35 1 3.7880 0.6813 1.1086 36 1 3.5829 -5.4939 0.6137 37 1 5.1253 -4.8603 1.2655 38 1 4.2239 -4.6485 3.4980 39 1 3.4238 -6.1503 2.9255 40 1 2.4982 -2.1031 4.8275 41 1 2.6371 -3.4465 5.9868 42 1 3.7550 -3.3438 4.6055 43 1 0.0619 -1.8593 6.6512 44 1 2.6620 -2.2519 2.5201 45 1 1.5639 -2.9021 1.2729 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192888835.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:54:26 Heat of formation + Delta-G solvation = -51.486837 kcal Electronic energy + Delta-G solvation = -26181.953874 eV Core-core repulsion = 22621.090498 eV Total energy + Delta-G solvation = -3560.863376 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.04819 -40.35803 -39.06489 -36.66827 -36.47997 -33.39048 -33.20731 -31.45319 -29.88023 -29.39858 -28.33995 -27.99755 -25.92632 -24.71972 -23.05750 -21.27321 -20.83524 -20.59676 -18.93676 -18.59325 -17.87249 -17.33776 -16.89097 -16.56657 -16.22105 -15.96187 -15.64208 -15.11491 -15.01433 -14.72893 -14.36210 -14.31459 -14.03406 -13.86340 -13.59743 -13.46167 -13.33452 -13.15569 -13.06045 -12.95828 -12.79592 -12.72068 -12.48894 -12.41037 -12.31612 -12.18386 -12.03673 -11.78965 -11.44522 -11.23186 -10.60202 -10.54648 -10.24728 -9.73021 -8.76725 -7.80737 -5.30536 1.21794 1.50764 1.53737 1.60593 1.62002 1.81202 2.24258 2.53424 3.13804 3.32623 3.59904 3.74819 3.85171 3.86812 3.93467 3.98572 4.29176 4.31013 4.40875 4.46800 4.54612 4.59972 4.66684 4.68874 4.73483 4.76838 4.80078 4.86188 5.02282 5.06856 5.10250 5.14945 5.15154 5.21284 5.32397 5.35529 5.44360 5.68802 5.72045 6.31673 6.35919 6.45522 6.90021 7.15942 7.18693 7.86600 8.32043 9.21538 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.015647 B = 0.005298 C = 0.004367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1789.073338 B = 5284.031832 C = 6409.990434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.513 3.487 3 O -0.576 6.576 4 N -0.719 5.719 5 C 0.166 3.834 6 C -0.135 4.135 7 C -0.158 4.158 8 C 0.532 3.468 9 O -0.562 6.562 10 N -0.606 5.606 11 C 0.111 3.889 12 C -0.141 4.141 13 C 0.165 3.835 14 H 0.091 0.909 15 N -0.595 5.595 16 C 0.175 3.825 17 C -0.263 4.263 18 H 0.078 0.922 19 C -0.044 4.044 20 N -0.932 5.932 21 Si 0.962 3.038 22 H -0.292 1.292 23 H -0.300 1.300 24 H -0.264 1.264 25 C 0.088 3.912 26 H 0.094 0.906 27 H 0.115 0.885 28 H 0.095 0.905 29 H 0.410 0.590 30 H 0.074 0.926 31 H 0.071 0.929 32 H 0.062 0.938 33 H 0.052 0.948 34 H 0.072 0.928 35 H 0.086 0.914 36 H 0.088 0.912 37 H 0.073 0.927 38 H 0.064 0.936 39 H 0.097 0.903 40 H 0.004 0.996 41 H 0.013 0.987 42 H 0.029 0.971 43 H 0.247 0.753 44 H 0.056 0.944 45 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.143 -1.490 -11.851 12.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.303 3.697 3 O -0.456 6.456 4 N -0.377 5.377 5 C 0.077 3.923 6 C -0.194 4.194 7 C -0.216 4.216 8 C 0.319 3.681 9 O -0.441 6.441 10 N -0.339 5.339 11 C -0.011 4.011 12 C -0.181 4.181 13 C 0.056 3.944 14 H 0.109 0.891 15 N -0.316 5.316 16 C 0.030 3.970 17 C -0.393 4.393 18 H 0.096 0.904 19 C -0.240 4.240 20 N -0.578 5.578 21 Si 0.791 3.209 22 H -0.219 1.219 23 H -0.227 1.227 24 H -0.189 1.189 25 C -0.037 4.037 26 H 0.113 0.887 27 H 0.133 0.867 28 H 0.114 0.886 29 H 0.251 0.749 30 H 0.092 0.908 31 H 0.090 0.910 32 H 0.081 0.919 33 H 0.071 0.929 34 H 0.091 0.909 35 H 0.104 0.896 36 H 0.106 0.894 37 H 0.092 0.908 38 H 0.083 0.917 39 H 0.115 0.885 40 H 0.022 0.978 41 H 0.032 0.968 42 H 0.047 0.953 43 H 0.056 0.944 44 H 0.075 0.925 45 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 3.006 -0.824 -12.135 12.529 hybrid contribution -0.852 -0.287 1.106 1.426 sum 2.154 -1.111 -11.029 11.292 Atomic orbital electron populations 1.21958 0.88613 1.06297 1.06005 1.21417 0.91939 0.82597 0.73744 1.90624 1.71440 1.32588 1.50908 1.46468 1.05452 1.09945 1.75885 1.20433 0.81556 0.91615 0.98704 1.21897 1.01924 1.01380 0.94187 1.22168 1.01778 1.01879 0.95775 1.20318 0.82393 0.86448 0.78939 1.90678 1.31676 1.77100 1.44631 1.48618 1.32241 1.15171 1.37875 1.22368 1.00273 0.82008 0.96484 1.23268 0.97711 1.02229 0.94871 1.21582 0.95790 0.92715 0.84330 0.89129 1.43993 1.15715 1.61983 1.09861 1.20479 0.89447 0.93838 0.93236 1.19536 0.96748 1.06637 1.16395 0.90427 1.25710 1.00658 0.95344 1.02277 1.70216 1.45012 1.10002 1.32535 0.85354 0.79343 0.77173 0.79050 1.21943 1.22744 1.18887 1.22987 0.86963 1.01025 0.92742 0.88680 0.86657 0.88602 0.74940 0.90758 0.90971 0.91913 0.92856 0.90936 0.89562 0.89425 0.90837 0.91692 0.88501 0.97795 0.96809 0.95254 0.94400 0.92536 0.90592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.14 10.32 71.23 0.74 -2.41 16 2 C 0.51 13.41 7.36 87.66 0.65 14.06 16 3 O -0.58 -18.91 13.31 -3.05 -0.04 -18.95 16 4 N -0.72 -17.82 4.01 -426.32 -1.71 -19.53 16 5 C 0.17 4.62 0.67 2.85 0.00 4.62 16 6 C -0.14 -3.59 7.87 71.98 0.57 -3.03 16 7 C -0.16 -4.69 8.26 71.98 0.59 -4.10 16 8 C 0.53 15.94 6.65 87.66 0.58 16.52 16 9 O -0.56 -19.52 16.28 -3.02 -0.05 -19.57 16 10 N -0.61 -16.97 3.30 -811.35 -2.68 -19.65 16 11 C 0.11 2.77 6.90 86.93 0.60 3.37 16 12 C -0.14 -3.87 6.61 32.06 0.21 -3.65 16 13 C 0.16 5.40 3.43 46.18 0.16 5.56 16 14 H 0.09 2.82 7.93 -2.39 -0.02 2.80 16 15 N -0.59 -25.78 2.93 -696.17 -2.04 -27.82 16 16 C 0.17 7.92 7.86 127.77 1.00 8.92 16 17 C -0.26 -12.78 9.58 84.03 0.80 -11.97 16 18 H 0.08 3.59 7.86 -2.91 -0.02 3.57 16 19 C -0.04 -2.25 5.04 84.86 0.43 -1.82 16 20 N -0.93 -51.50 10.93 21.65 0.24 -51.26 16 21 Si 0.96 41.84 29.58 68.60 2.03 43.87 16 22 H -0.29 -12.83 7.11 99.48 0.71 -12.12 16 23 H -0.30 -13.43 7.11 99.48 0.71 -12.73 16 24 H -0.26 -10.76 7.11 99.48 0.71 -10.05 16 25 C 0.09 2.65 5.13 86.73 0.44 3.09 16 26 H 0.09 1.74 8.12 -2.39 -0.02 1.72 16 27 H 0.12 1.46 8.14 -2.38 -0.02 1.44 16 28 H 0.10 1.82 8.14 -2.39 -0.02 1.80 16 29 H 0.41 8.91 5.63 -92.71 -0.52 8.39 16 30 H 0.07 2.05 6.52 -2.39 -0.02 2.04 16 31 H 0.07 1.90 7.94 -2.39 -0.02 1.88 16 32 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 33 H 0.05 1.72 6.19 -2.39 -0.01 1.70 16 34 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 35 H 0.09 2.77 5.84 -2.39 -0.01 2.75 16 36 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 37 H 0.07 1.87 8.08 -2.39 -0.02 1.85 16 38 H 0.06 1.97 6.06 -2.39 -0.01 1.96 16 39 H 0.10 2.34 8.14 -2.38 -0.02 2.32 16 40 H 0.00 0.19 7.28 -2.39 -0.02 0.17 16 41 H 0.01 0.67 7.41 -2.39 -0.02 0.65 16 42 H 0.03 1.15 6.03 -2.39 -0.01 1.14 16 43 H 0.25 13.49 8.31 -92.71 -0.77 12.72 16 44 H 0.06 2.03 5.26 -2.39 -0.01 2.02 16 45 H 0.08 2.02 5.61 -2.38 -0.01 2.01 16 Total: -1.00 -63.32 346.28 3.01 -60.31 By element: Atomic # 1 Polarization: 22.95 SS G_CDS: 0.48 Total: 23.43 kcal Atomic # 6 Polarization: 22.38 SS G_CDS: 6.78 Total: 29.16 kcal Atomic # 7 Polarization: -112.07 SS G_CDS: -6.19 Total: -118.25 kcal Atomic # 8 Polarization: -38.42 SS G_CDS: -0.09 Total: -38.51 kcal Atomic # 14 Polarization: 41.84 SS G_CDS: 2.03 Total: 43.87 kcal Total: -63.32 3.01 -60.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192888835.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.824 kcal (2) G-P(sol) polarization free energy of solvation -63.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds