Wall clock time and date at job start Tue Mar 31 2020 03:54:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 O 1.21284 * 119.99821 * 2 1 4 4 N 1.34774 * 119.99871 * 179.97438 * 2 1 3 5 5 C 1.46494 * 119.99703 * 180.02562 * 4 2 1 6 6 C 1.53006 * 109.47392 * 296.34375 * 5 4 2 7 7 C 1.52998 * 109.47628 * 56.34543 * 5 4 2 8 8 C 1.50700 * 109.47094 * 176.34563 * 5 4 2 9 9 O 1.21287 * 120.00177 * 138.28043 * 8 5 4 10 10 N 1.34783 * 120.00098 * 318.28407 * 8 5 4 11 11 C 1.47422 * 125.64499 * 4.53238 * 10 8 5 12 12 C 1.54909 * 104.83348 * 204.09382 * 11 10 8 13 13 C 1.55162 * 101.57967 * 322.99218 * 12 11 10 14 14 H 1.09000 * 110.71902 * 277.13886 * 13 12 11 15 15 N 1.46496 * 110.71861 * 154.04023 * 13 12 11 16 16 C 1.46496 * 120.00314 * 301.45629 * 15 13 12 17 17 C 1.36941 * 119.99559 * 121.45129 * 15 13 12 18 18 H 1.07994 * 120.00658 * 325.35756 * 17 15 13 19 19 C 1.38820 * 119.99322 * 145.36338 * 17 15 13 20 20 N 1.31624 * 119.99658 * 161.31928 * 19 17 15 21 21 Si 1.86791 * 120.00165 * 341.31868 * 19 17 15 22 22 H 1.48497 * 109.47502 * 90.80943 * 21 19 17 23 23 H 1.48506 * 109.47090 * 210.80705 * 21 19 17 24 24 H 1.48501 * 109.47367 * 330.80741 * 21 19 17 25 25 C 1.47016 * 125.65164 * 184.22810 * 10 8 5 26 26 H 1.09000 * 109.47039 * 240.00539 * 1 2 3 27 27 H 1.08995 * 109.47003 * 0.02562 * 1 2 3 28 28 H 1.09000 * 109.46813 * 119.99940 * 1 2 3 29 29 H 0.96995 * 119.99851 * 359.73370 * 4 2 1 30 30 H 1.09000 * 109.46984 * 60.00159 * 6 5 4 31 31 H 1.09003 * 109.47344 * 180.02562 * 6 5 4 32 32 H 1.09002 * 109.46928 * 300.00422 * 6 5 4 33 33 H 1.09002 * 109.46680 * 59.99338 * 7 5 4 34 34 H 1.08999 * 109.47715 * 180.02562 * 7 5 4 35 35 H 1.09000 * 109.46931 * 299.99952 * 7 5 4 36 36 H 1.09001 * 110.37040 * 322.93334 * 11 10 8 37 37 H 1.09006 * 110.36569 * 85.25326 * 11 10 8 38 38 H 1.08998 * 111.00610 * 81.06680 * 12 11 10 39 39 H 1.09002 * 111.00320 * 204.91973 * 12 11 10 40 40 H 1.09003 * 109.47411 * 86.66052 * 16 15 13 41 41 H 1.09000 * 109.47342 * 206.66176 * 16 15 13 42 42 H 1.09003 * 109.47285 * 326.66435 * 16 15 13 43 43 H 0.96996 * 120.00046 * 179.97438 * 20 19 17 44 44 H 1.08998 * 109.87976 * 298.39702 * 25 10 8 45 45 H 1.09007 * 109.88182 * 59.55731 * 25 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1135 1.0504 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.6459 -1.1671 0.0011 6 6 4.1564 -0.5273 -1.2916 7 6 4.1555 -0.3675 1.2018 8 6 4.1482 -2.5850 0.0922 9 8 5.0898 -2.9395 -0.5852 10 7 3.5511 -3.4593 0.9263 11 6 2.3460 -3.1918 1.7321 12 6 2.4291 -4.1905 2.9134 13 6 3.0250 -5.4441 2.2201 14 1 2.2425 -6.0205 1.7267 15 7 3.7482 -6.2756 3.1854 16 6 4.8710 -5.7136 3.9400 17 6 3.3746 -7.5783 3.3822 18 1 2.3328 -7.8563 3.3217 19 6 4.3350 -8.5414 3.6598 20 7 3.9807 -9.6866 4.2032 21 14 6.1301 -8.2120 3.2619 22 1 6.7926 -7.5939 4.4384 23 1 6.8062 -9.4917 2.9289 24 1 6.2189 -7.2889 2.1021 25 6 3.9900 -4.8396 1.1784 26 1 -0.3633 -0.5138 0.8900 27 1 -0.3633 1.0276 -0.0005 28 1 -0.3633 -0.5138 -0.8900 29 1 1.6959 -2.0072 0.0048 30 1 3.7931 0.4983 -1.3575 31 1 5.2465 -0.5277 -1.2913 32 1 3.7934 -1.0970 -2.1470 33 1 3.7917 -0.8233 2.1227 34 1 5.2455 -0.3671 1.2020 35 1 3.7922 0.6581 1.1359 36 1 2.3561 -2.1662 2.1011 37 1 1.4473 -3.3750 1.1430 38 1 3.0962 -3.8202 3.6918 39 1 1.4388 -4.4010 3.3174 40 1 4.4961 -5.2247 4.8392 41 1 5.5569 -6.5130 4.2203 42 1 5.3956 -4.9847 3.3222 43 1 4.6517 -10.3597 4.3968 44 1 3.9495 -5.4160 0.2542 45 1 5.0060 -4.8392 1.5733 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192888836.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:54:28 Heat of formation + Delta-G solvation = -24.877830 kcal Electronic energy + Delta-G solvation = -25786.458834 eV Core-core repulsion = 22226.749310 eV Total energy + Delta-G solvation = -3559.709523 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.06851 -39.40046 -37.84685 -35.75203 -35.04333 -32.38193 -31.88157 -30.35427 -29.26591 -28.55058 -27.36383 -26.36662 -24.83074 -22.76693 -22.55531 -20.21099 -19.69655 -19.40701 -17.65107 -17.18929 -16.94918 -16.32086 -15.64749 -15.45563 -15.27263 -15.03383 -14.34416 -14.16197 -13.80889 -13.52170 -13.28471 -13.03139 -12.86491 -12.84980 -12.72240 -12.44954 -12.39376 -12.24487 -12.10297 -12.02312 -11.87193 -11.81244 -11.43392 -11.05337 -10.92972 -10.62014 -10.30713 -10.21548 -9.97626 -9.60909 -9.55298 -9.40962 -8.63841 -8.58537 -7.03687 -6.08586 -3.53366 2.28857 2.39210 2.89187 3.04426 3.23275 3.42040 3.45287 4.19494 4.41608 4.49970 4.67965 4.75124 4.77378 4.90990 4.95210 5.05908 5.09456 5.14847 5.26814 5.37077 5.51217 5.54054 5.58146 5.62663 5.63392 5.71041 5.74980 5.98986 6.02494 6.09896 6.12196 6.15773 6.18685 6.29632 6.33869 6.54568 6.56354 6.67058 7.17099 7.50071 7.88889 7.90746 8.08641 8.23469 8.81778 9.57544 9.93806 11.06442 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.027007 B = 0.004030 C = 0.003732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1036.518570 B = 6945.892226 C = 7501.064384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.515 3.485 3 O -0.540 6.540 4 N -0.727 5.727 5 C 0.165 3.835 6 C -0.146 4.146 7 C -0.163 4.163 8 C 0.525 3.475 9 O -0.529 6.529 10 N -0.610 5.610 11 C 0.092 3.908 12 C -0.150 4.150 13 C 0.173 3.827 14 H 0.089 0.911 15 N -0.596 5.596 16 C 0.102 3.898 17 C -0.275 4.275 18 H 0.085 0.915 19 C 0.034 3.966 20 N -0.901 5.901 21 Si 0.891 3.109 22 H -0.285 1.285 23 H -0.303 1.303 24 H -0.271 1.271 25 C 0.080 3.920 26 H 0.090 0.910 27 H 0.093 0.907 28 H 0.088 0.912 29 H 0.404 0.596 30 H 0.080 0.920 31 H 0.074 0.926 32 H 0.058 0.942 33 H 0.061 0.939 34 H 0.069 0.931 35 H 0.095 0.905 36 H 0.078 0.922 37 H 0.067 0.933 38 H 0.075 0.925 39 H 0.083 0.917 40 H 0.020 0.980 41 H 0.050 0.950 42 H 0.032 0.968 43 H 0.265 0.735 44 H 0.067 0.933 45 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.069 18.198 -6.724 20.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.303 3.697 3 O -0.417 6.417 4 N -0.385 5.385 5 C 0.076 3.924 6 C -0.204 4.204 7 C -0.221 4.221 8 C 0.311 3.689 9 O -0.405 6.405 10 N -0.344 5.344 11 C -0.031 4.031 12 C -0.190 4.190 13 C 0.063 3.937 14 H 0.107 0.893 15 N -0.317 5.317 16 C -0.043 4.043 17 C -0.403 4.403 18 H 0.102 0.898 19 C -0.167 4.167 20 N -0.542 5.542 21 Si 0.723 3.277 22 H -0.214 1.214 23 H -0.231 1.231 24 H -0.196 1.196 25 C -0.044 4.044 26 H 0.109 0.891 27 H 0.112 0.888 28 H 0.107 0.893 29 H 0.242 0.758 30 H 0.099 0.901 31 H 0.093 0.907 32 H 0.077 0.923 33 H 0.080 0.920 34 H 0.088 0.912 35 H 0.113 0.887 36 H 0.096 0.904 37 H 0.085 0.915 38 H 0.094 0.906 39 H 0.102 0.898 40 H 0.038 0.962 41 H 0.068 0.932 42 H 0.051 0.949 43 H 0.075 0.925 44 H 0.085 0.915 45 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -6.017 18.577 -7.066 20.766 hybrid contribution 0.857 -0.501 -0.113 0.999 sum -5.160 18.076 -7.180 20.123 Atomic orbital electron populations 1.21954 0.91418 1.05681 1.04512 1.20813 0.90583 0.83249 0.75101 1.90663 1.70501 1.31442 1.49064 1.46525 1.06278 1.09565 1.76126 1.20542 0.80312 0.92669 0.98900 1.21997 1.02338 1.01596 0.94470 1.22246 1.01965 1.02383 0.95496 1.20195 0.83534 0.85923 0.79232 1.90733 1.28553 1.78008 1.43186 1.48611 1.28878 1.14107 1.42829 1.22593 0.87116 1.00511 0.92920 1.23328 1.02628 0.96417 0.96653 1.21487 0.93210 0.90614 0.88370 0.89269 1.44041 1.36235 1.10047 1.41396 1.21441 0.90848 0.97331 0.94638 1.18832 0.93810 0.81686 1.45953 0.89774 1.25422 0.98216 0.94991 0.98022 1.69808 1.34272 1.07697 1.42405 0.86836 0.86024 0.76123 0.78714 1.21367 1.23098 1.19581 1.22922 1.00986 0.80119 1.00351 0.89122 0.88820 0.89323 0.75813 0.90148 0.90685 0.92264 0.91961 0.91195 0.88680 0.90354 0.91518 0.90584 0.89841 0.96167 0.93240 0.94944 0.92492 0.91477 0.91091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.94 10.32 36.01 0.37 -0.57 16 2 C 0.51 4.79 7.36 -10.98 -0.08 4.71 16 3 O -0.54 -6.89 13.31 5.55 0.07 -6.81 16 4 N -0.73 -6.75 3.66 -48.68 -0.18 -6.93 16 5 C 0.16 1.96 0.64 -132.97 -0.08 1.88 16 6 C -0.15 -1.77 7.90 37.16 0.29 -1.47 16 7 C -0.16 -1.87 8.22 37.16 0.31 -1.57 16 8 C 0.52 7.81 6.68 -10.98 -0.07 7.73 16 9 O -0.53 -9.89 16.35 5.55 0.09 -9.80 16 10 N -0.61 -8.58 3.30 -170.52 -0.56 -9.15 16 11 C 0.09 0.98 5.11 -2.53 -0.01 0.97 16 12 C -0.15 -2.01 6.65 -24.58 -0.16 -2.17 16 13 C 0.17 3.01 3.42 -66.09 -0.23 2.78 16 14 H 0.09 1.55 7.95 -51.93 -0.41 1.14 16 15 N -0.60 -13.14 2.58 -171.38 -0.44 -13.58 16 16 C 0.10 2.13 8.26 59.84 0.49 2.62 16 17 C -0.27 -7.25 9.93 -15.05 -0.15 -7.40 16 18 H 0.08 2.36 8.06 -52.49 -0.42 1.94 16 19 C 0.03 0.96 5.37 -17.43 -0.09 0.86 16 20 N -0.90 -26.70 13.97 55.49 0.78 -25.92 16 21 Si 0.89 22.08 24.83 -169.99 -4.22 17.86 16 22 H -0.28 -6.84 6.52 56.52 0.37 -6.47 16 23 H -0.30 -7.65 7.11 56.52 0.40 -7.25 16 24 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 25 C 0.08 1.38 6.47 -3.06 -0.02 1.36 16 26 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 27 H 0.09 0.51 8.12 -51.93 -0.42 0.09 16 28 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.40 3.14 5.67 -40.82 -0.23 2.91 16 30 H 0.08 0.98 6.44 -51.93 -0.33 0.64 16 31 H 0.07 0.94 7.91 -51.93 -0.41 0.53 16 32 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 33 H 0.06 0.69 6.65 -51.93 -0.35 0.34 16 34 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.09 1.14 5.91 -51.93 -0.31 0.84 16 36 H 0.08 0.74 5.45 -51.93 -0.28 0.46 16 37 H 0.07 0.54 7.02 -51.93 -0.36 0.18 16 38 H 0.08 1.09 7.15 -51.93 -0.37 0.72 16 39 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 40 H 0.02 0.40 7.96 -51.93 -0.41 -0.02 16 41 H 0.05 1.14 2.61 -51.93 -0.14 1.01 16 42 H 0.03 0.62 6.19 -51.93 -0.32 0.30 16 43 H 0.27 7.47 8.31 -40.82 -0.34 7.14 16 44 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 45 H 0.07 1.39 6.04 -51.93 -0.31 1.08 16 LS Contribution 341.35 15.07 5.14 5.14 Total: -1.00 -32.71 341.35 -5.55 -38.26 By element: Atomic # 1 Polarization: 7.99 SS G_CDS: -6.79 Total: 1.19 kcal Atomic # 6 Polarization: 9.17 SS G_CDS: 0.56 Total: 9.73 kcal Atomic # 7 Polarization: -55.17 SS G_CDS: -0.41 Total: -55.58 kcal Atomic # 8 Polarization: -16.78 SS G_CDS: 0.16 Total: -16.61 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -4.22 Total: 17.86 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -32.71 -5.55 -38.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192888836.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.384 kcal (2) G-P(sol) polarization free energy of solvation -32.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds