Wall clock time and date at job start Tue Mar 31 2020 03:54:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 O 1.21284 * 119.99821 * 2 1 4 4 N 1.34774 * 119.99871 * 179.97438 * 2 1 3 5 5 C 1.46494 * 119.99703 * 180.02562 * 4 2 1 6 6 C 1.53006 * 109.47392 * 296.34375 * 5 4 2 7 7 C 1.52998 * 109.47628 * 56.34543 * 5 4 2 8 8 C 1.50700 * 109.47094 * 176.34563 * 5 4 2 9 9 O 1.21287 * 120.00177 * 138.28043 * 8 5 4 10 10 N 1.34783 * 120.00098 * 318.28407 * 8 5 4 11 11 C 1.47422 * 125.64499 * 4.53238 * 10 8 5 12 12 C 1.54909 * 104.83348 * 204.09382 * 11 10 8 13 13 C 1.55162 * 101.57967 * 322.99218 * 12 11 10 14 14 H 1.09000 * 110.71902 * 277.13886 * 13 12 11 15 15 N 1.46496 * 110.71861 * 154.04023 * 13 12 11 16 16 C 1.46496 * 120.00314 * 301.45629 * 15 13 12 17 17 C 1.36941 * 119.99559 * 121.45129 * 15 13 12 18 18 H 1.07994 * 120.00658 * 325.35756 * 17 15 13 19 19 C 1.38820 * 119.99322 * 145.36338 * 17 15 13 20 20 N 1.31624 * 119.99658 * 161.31928 * 19 17 15 21 21 Si 1.86791 * 120.00165 * 341.31868 * 19 17 15 22 22 H 1.48497 * 109.47502 * 90.80943 * 21 19 17 23 23 H 1.48506 * 109.47090 * 210.80705 * 21 19 17 24 24 H 1.48501 * 109.47367 * 330.80741 * 21 19 17 25 25 C 1.47016 * 125.65164 * 184.22810 * 10 8 5 26 26 H 1.09000 * 109.47039 * 240.00539 * 1 2 3 27 27 H 1.08995 * 109.47003 * 0.02562 * 1 2 3 28 28 H 1.09000 * 109.46813 * 119.99940 * 1 2 3 29 29 H 0.96995 * 119.99851 * 359.73370 * 4 2 1 30 30 H 1.09000 * 109.46984 * 60.00159 * 6 5 4 31 31 H 1.09003 * 109.47344 * 180.02562 * 6 5 4 32 32 H 1.09002 * 109.46928 * 300.00422 * 6 5 4 33 33 H 1.09002 * 109.46680 * 59.99338 * 7 5 4 34 34 H 1.08999 * 109.47715 * 180.02562 * 7 5 4 35 35 H 1.09000 * 109.46931 * 299.99952 * 7 5 4 36 36 H 1.09001 * 110.37040 * 322.93334 * 11 10 8 37 37 H 1.09006 * 110.36569 * 85.25326 * 11 10 8 38 38 H 1.08998 * 111.00610 * 81.06680 * 12 11 10 39 39 H 1.09002 * 111.00320 * 204.91973 * 12 11 10 40 40 H 1.09003 * 109.47411 * 86.66052 * 16 15 13 41 41 H 1.09000 * 109.47342 * 206.66176 * 16 15 13 42 42 H 1.09003 * 109.47285 * 326.66435 * 16 15 13 43 43 H 0.96996 * 120.00046 * 179.97438 * 20 19 17 44 44 H 1.08998 * 109.87976 * 298.39702 * 25 10 8 45 45 H 1.09007 * 109.88182 * 59.55731 * 25 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1135 1.0504 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.6459 -1.1671 0.0011 6 6 4.1564 -0.5273 -1.2916 7 6 4.1555 -0.3675 1.2018 8 6 4.1482 -2.5850 0.0922 9 8 5.0898 -2.9395 -0.5852 10 7 3.5511 -3.4593 0.9263 11 6 2.3460 -3.1918 1.7321 12 6 2.4291 -4.1905 2.9134 13 6 3.0250 -5.4441 2.2201 14 1 2.2425 -6.0205 1.7267 15 7 3.7482 -6.2756 3.1854 16 6 4.8710 -5.7136 3.9400 17 6 3.3746 -7.5783 3.3822 18 1 2.3328 -7.8563 3.3217 19 6 4.3350 -8.5414 3.6598 20 7 3.9807 -9.6866 4.2032 21 14 6.1301 -8.2120 3.2619 22 1 6.7926 -7.5939 4.4384 23 1 6.8062 -9.4917 2.9289 24 1 6.2189 -7.2889 2.1021 25 6 3.9900 -4.8396 1.1784 26 1 -0.3633 -0.5138 0.8900 27 1 -0.3633 1.0276 -0.0005 28 1 -0.3633 -0.5138 -0.8900 29 1 1.6959 -2.0072 0.0048 30 1 3.7931 0.4983 -1.3575 31 1 5.2465 -0.5277 -1.2913 32 1 3.7934 -1.0970 -2.1470 33 1 3.7917 -0.8233 2.1227 34 1 5.2455 -0.3671 1.2020 35 1 3.7922 0.6581 1.1359 36 1 2.3561 -2.1662 2.1011 37 1 1.4473 -3.3750 1.1430 38 1 3.0962 -3.8202 3.6918 39 1 1.4388 -4.4010 3.3174 40 1 4.4961 -5.2247 4.8392 41 1 5.5569 -6.5130 4.2203 42 1 5.3956 -4.9847 3.3222 43 1 4.6517 -10.3597 4.3968 44 1 3.9495 -5.4160 0.2542 45 1 5.0060 -4.8392 1.5733 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192888836.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:54:28 Heat of formation + Delta-G solvation = -48.504420 kcal Electronic energy + Delta-G solvation = -25787.483359 eV Core-core repulsion = 22226.749310 eV Total energy + Delta-G solvation = -3560.734049 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.08742 -40.38561 -39.17908 -36.89916 -36.47835 -33.79017 -33.17611 -31.71037 -29.92021 -29.71470 -28.34146 -28.15758 -26.21750 -24.29215 -23.56787 -21.05493 -20.96500 -20.59392 -19.04589 -18.68378 -17.92567 -17.72585 -17.13878 -16.46287 -16.21931 -16.15726 -15.81908 -15.26626 -14.97274 -14.70263 -14.60685 -14.41206 -14.27278 -14.00975 -13.86543 -13.59740 -13.47327 -13.39130 -13.20111 -13.11487 -12.96769 -12.75160 -12.57892 -12.41487 -12.35647 -12.33399 -12.02153 -11.57712 -11.49169 -11.27708 -10.67301 -10.54313 -10.24383 -9.78788 -8.87884 -8.21996 -5.61443 1.22958 1.25013 1.39440 1.47219 1.67250 1.72532 2.19852 2.36456 3.04008 3.18483 3.24842 3.67299 3.75992 3.81686 3.97744 4.00468 4.20395 4.23184 4.36540 4.42156 4.48825 4.57586 4.59982 4.63662 4.68196 4.73137 4.75306 4.76329 4.85469 4.90931 4.94036 5.06938 5.10819 5.17347 5.19662 5.24153 5.33540 5.36481 5.88781 6.14779 6.34711 6.50310 6.86729 6.91598 7.23688 7.56480 7.97103 8.97145 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.027007 B = 0.004030 C = 0.003732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1036.518570 B = 6945.892226 C = 7501.064384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.513 3.487 3 O -0.577 6.577 4 N -0.720 5.720 5 C 0.173 3.827 6 C -0.141 4.141 7 C -0.157 4.157 8 C 0.525 3.475 9 O -0.573 6.573 10 N -0.606 5.606 11 C 0.095 3.905 12 C -0.138 4.138 13 C 0.166 3.834 14 H 0.089 0.911 15 N -0.609 5.609 16 C 0.102 3.898 17 C -0.254 4.254 18 H 0.060 0.940 19 C -0.019 4.019 20 N -0.948 5.948 21 Si 0.946 3.054 22 H -0.273 1.273 23 H -0.313 1.313 24 H -0.270 1.270 25 C 0.089 3.911 26 H 0.115 0.885 27 H 0.092 0.908 28 H 0.108 0.892 29 H 0.414 0.586 30 H 0.081 0.919 31 H 0.064 0.936 32 H 0.056 0.944 33 H 0.070 0.930 34 H 0.063 0.937 35 H 0.092 0.908 36 H 0.101 0.899 37 H 0.105 0.895 38 H 0.069 0.931 39 H 0.102 0.898 40 H 0.037 0.963 41 H 0.028 0.972 42 H 0.049 0.951 43 H 0.263 0.737 44 H 0.054 0.946 45 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.710 20.492 -6.840 23.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.303 3.697 3 O -0.456 6.456 4 N -0.378 5.378 5 C 0.084 3.916 6 C -0.199 4.199 7 C -0.215 4.215 8 C 0.313 3.687 9 O -0.452 6.452 10 N -0.339 5.339 11 C -0.026 4.026 12 C -0.178 4.178 13 C 0.058 3.942 14 H 0.107 0.893 15 N -0.331 5.331 16 C -0.042 4.042 17 C -0.384 4.384 18 H 0.078 0.922 19 C -0.216 4.216 20 N -0.593 5.593 21 Si 0.777 3.223 22 H -0.201 1.201 23 H -0.242 1.242 24 H -0.195 1.195 25 C -0.036 4.036 26 H 0.133 0.867 27 H 0.111 0.889 28 H 0.126 0.874 29 H 0.253 0.747 30 H 0.099 0.901 31 H 0.083 0.917 32 H 0.075 0.925 33 H 0.089 0.911 34 H 0.082 0.918 35 H 0.111 0.889 36 H 0.119 0.881 37 H 0.123 0.877 38 H 0.088 0.912 39 H 0.121 0.879 40 H 0.055 0.945 41 H 0.046 0.954 42 H 0.067 0.933 43 H 0.072 0.928 44 H 0.073 0.927 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -7.705 20.921 -7.180 23.422 hybrid contribution 1.277 -1.144 -0.110 1.718 sum -6.429 19.777 -7.289 22.036 Atomic orbital electron populations 1.21985 0.87800 1.06392 1.06607 1.21561 0.92116 0.82308 0.73702 1.90659 1.71560 1.32710 1.50712 1.46445 1.04868 1.10370 1.76130 1.20324 0.82109 0.90284 0.98912 1.21941 1.01766 1.01553 0.94687 1.22196 1.01660 1.02138 0.95529 1.20685 0.82800 0.86799 0.78435 1.90715 1.30536 1.78928 1.45010 1.48595 1.29724 1.12651 1.42892 1.22855 0.86897 1.00928 0.91953 1.23212 1.03051 0.94378 0.97121 1.21636 0.92707 0.91660 0.88186 0.89314 1.44114 1.36910 1.09082 1.43044 1.21434 0.90305 0.96888 0.95572 1.18804 0.92689 0.83506 1.43404 0.92190 1.25957 1.01557 0.95086 0.98994 1.69918 1.35256 1.09004 1.45100 0.85930 0.82309 0.75272 0.78749 1.20095 1.24232 1.19542 1.22548 0.99582 0.81959 0.99487 0.86651 0.88904 0.87383 0.74654 0.90066 0.91673 0.92492 0.91073 0.91788 0.88918 0.88130 0.87709 0.91223 0.87912 0.94483 0.95377 0.93274 0.92777 0.92748 0.93556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.06 10.32 71.24 0.74 -0.33 16 2 C 0.51 7.83 7.36 87.66 0.65 8.48 16 3 O -0.58 -13.44 13.31 -3.04 -0.04 -13.48 16 4 N -0.72 -10.85 3.66 -426.32 -1.56 -12.41 16 5 C 0.17 3.77 0.64 2.86 0.00 3.77 16 6 C -0.14 -3.28 7.90 71.98 0.57 -2.71 16 7 C -0.16 -3.28 8.22 71.98 0.59 -2.69 16 8 C 0.52 14.74 6.68 87.66 0.59 15.33 16 9 O -0.57 -21.23 16.35 -3.05 -0.05 -21.28 16 10 N -0.61 -15.53 3.30 -811.77 -2.68 -18.21 16 11 C 0.10 1.61 5.11 86.86 0.44 2.06 16 12 C -0.14 -3.18 6.65 31.99 0.21 -2.97 16 13 C 0.17 5.46 3.42 46.18 0.16 5.62 16 14 H 0.09 2.93 7.95 -2.39 -0.02 2.91 16 15 N -0.61 -26.19 2.58 -696.13 -1.79 -27.99 16 16 C 0.10 4.11 8.26 127.77 1.06 5.16 16 17 C -0.25 -13.47 9.93 84.03 0.83 -12.64 16 18 H 0.06 3.42 8.06 -2.91 -0.02 3.40 16 19 C -0.02 -1.09 5.37 84.86 0.46 -0.64 16 20 N -0.95 -57.52 13.97 21.65 0.30 -57.22 16 21 Si 0.95 46.27 24.83 68.60 1.70 47.98 16 22 H -0.27 -12.68 6.52 99.48 0.65 -12.03 16 23 H -0.31 -15.69 7.11 99.48 0.71 -14.98 16 24 H -0.27 -13.01 7.11 99.48 0.71 -12.30 16 25 C 0.09 2.95 6.47 86.73 0.56 3.51 16 26 H 0.12 0.21 8.14 -2.39 -0.02 0.19 16 27 H 0.09 0.67 8.12 -2.39 -0.02 0.65 16 28 H 0.11 0.32 8.14 -2.39 -0.02 0.30 16 29 H 0.41 4.56 5.67 -92.71 -0.53 4.04 16 30 H 0.08 1.89 6.44 -2.39 -0.02 1.87 16 31 H 0.06 1.62 7.91 -2.39 -0.02 1.60 16 32 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 33 H 0.07 1.34 6.65 -2.39 -0.02 1.32 16 34 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 35 H 0.09 2.05 5.91 -2.39 -0.01 2.04 16 36 H 0.10 1.37 5.45 -2.39 -0.01 1.36 16 37 H 0.11 1.09 7.02 -2.38 -0.02 1.07 16 38 H 0.07 1.74 7.15 -2.39 -0.02 1.73 16 39 H 0.10 2.04 8.14 -2.39 -0.02 2.02 16 40 H 0.04 1.37 7.96 -2.39 -0.02 1.35 16 41 H 0.03 1.26 2.61 -2.39 -0.01 1.26 16 42 H 0.05 1.80 6.19 -2.39 -0.01 1.79 16 43 H 0.26 15.26 8.31 -92.71 -0.77 14.49 16 44 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 45 H 0.05 1.78 6.04 -2.38 -0.01 1.76 16 Total: -1.00 -73.40 341.35 3.15 -70.25 By element: Atomic # 1 Polarization: 10.00 SS G_CDS: 0.42 Total: 10.42 kcal Atomic # 6 Polarization: 15.10 SS G_CDS: 6.85 Total: 21.95 kcal Atomic # 7 Polarization: -110.10 SS G_CDS: -5.73 Total: -115.83 kcal Atomic # 8 Polarization: -34.67 SS G_CDS: -0.09 Total: -34.76 kcal Atomic # 14 Polarization: 46.27 SS G_CDS: 1.70 Total: 47.98 kcal Total: -73.40 3.15 -70.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192888836.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.750 kcal (2) G-P(sol) polarization free energy of solvation -73.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds