Wall clock time and date at job start Tue Mar 31 2020 03:16:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 O 1.21280 * 120.00190 * 2 1 4 4 N 1.34776 * 119.99974 * 180.27631 * 2 1 3 5 5 C 1.46505 * 120.00191 * 179.72391 * 4 2 1 6 6 H 1.08998 * 109.47205 * 325.00249 * 5 4 2 7 7 C 1.53003 * 109.46903 * 85.00020 * 5 4 2 8 8 C 1.50695 * 109.47010 * 204.99813 * 5 4 2 9 9 O 1.21274 * 120.00499 * 337.26734 * 8 5 4 10 10 N 1.34779 * 119.99526 * 157.26767 * 8 5 4 11 11 C 1.46927 * 120.63290 * 4.79284 * 10 8 5 12 12 C 1.52758 * 109.00943 * 233.58455 * 11 10 8 13 13 C 1.53041 * 109.38543 * 305.58845 * 12 11 10 14 14 C 1.52998 * 109.44956 * 181.25568 * 13 12 11 15 15 N 1.46502 * 109.47224 * 64.93365 * 14 13 12 16 16 C 1.36938 * 120.00111 * 179.97438 * 15 14 13 17 17 H 1.08003 * 119.99848 * 0.02562 * 16 15 14 18 18 C 1.38808 * 120.00264 * 180.02562 * 16 15 14 19 19 N 1.31621 * 119.99517 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 120.00154 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.47204 * 60.00219 * 20 18 16 22 22 H 1.48503 * 109.47383 * 180.02562 * 20 18 16 23 23 H 1.48499 * 109.47319 * 300.00304 * 20 18 16 24 24 C 1.53038 * 109.53669 * 61.24030 * 13 12 11 25 25 C 1.46925 * 120.63037 * 185.07671 * 10 8 5 26 26 H 1.09004 * 109.46838 * 0.02562 * 1 2 3 27 27 H 1.09003 * 109.47199 * 119.99490 * 1 2 3 28 28 H 1.08997 * 109.47490 * 240.00278 * 1 2 3 29 29 H 0.96994 * 119.99743 * 359.72417 * 4 2 1 30 30 H 1.09003 * 109.47340 * 296.07459 * 7 5 4 31 31 H 1.09002 * 109.46913 * 56.06965 * 7 5 4 32 32 H 1.08996 * 109.47431 * 176.07413 * 7 5 4 33 33 H 1.09003 * 109.58635 * 353.42326 * 11 10 8 34 34 H 1.09005 * 109.58382 * 113.84669 * 11 10 8 35 35 H 1.09006 * 109.56030 * 185.55426 * 12 11 10 36 36 H 1.08999 * 109.35948 * 65.50056 * 12 11 10 37 37 H 1.09002 * 109.45899 * 301.22168 * 13 12 11 38 38 H 1.08997 * 109.47341 * 184.93943 * 14 13 12 39 39 H 1.09002 * 109.46972 * 304.93960 * 14 13 12 40 40 H 0.96998 * 120.00026 * 0.02562 * 15 14 13 41 41 H 0.97008 * 119.99401 * 180.02562 * 19 18 16 42 42 H 1.08997 * 109.49672 * 178.68289 * 24 13 12 43 43 H 1.09007 * 109.49733 * 58.58731 * 24 13 12 44 44 H 1.09002 * 109.58970 * 246.15831 * 25 10 8 45 45 H 1.09007 * 109.58541 * 6.43941 * 25 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1808 -1.1672 -0.0056 5 6 3.6458 -1.1672 -0.0117 6 1 4.0067 -0.3240 -0.6006 7 6 4.1618 -1.0450 1.4235 8 6 4.1456 -2.4535 -0.6173 9 8 3.4344 -3.4357 -0.6270 10 7 5.3830 -2.5121 -1.1483 11 6 6.2945 -1.3639 -1.0513 12 6 6.7910 -1.0032 -2.4501 13 6 7.4070 -2.2414 -3.1055 14 6 7.9330 -1.8743 -4.4945 15 7 9.0332 -0.9159 -4.3624 16 6 9.6653 -0.4408 -5.4805 17 1 9.3525 -0.7724 -6.4596 18 6 10.7080 0.4668 -5.3554 19 7 11.0895 0.8705 -4.1621 20 14 11.5698 1.1154 -6.8805 21 1 10.5861 1.8160 -7.7447 22 1 12.6401 2.0633 -6.4790 23 1 12.1687 -0.0179 -7.6304 24 6 6.3435 -3.3342 -3.2354 25 6 5.8439 -3.7234 -1.8405 26 1 -0.3633 1.0277 -0.0005 27 1 -0.3634 -0.5138 -0.8901 28 1 -0.3634 -0.5138 0.8900 29 1 1.6958 -2.0072 -0.0056 30 1 3.8588 -0.0834 1.8379 31 1 3.7445 -1.8494 2.0293 32 1 5.2495 -1.1150 1.4258 33 1 5.7657 -0.5128 -0.6220 34 1 7.1446 -1.6244 -0.4207 35 1 7.5429 -0.2171 -2.3791 36 1 5.9527 -0.6522 -3.0518 37 1 8.2296 -2.6065 -2.4905 38 1 8.2921 -2.7728 -4.9962 39 1 7.1301 -1.4271 -5.0806 40 1 9.3144 -0.6184 -3.4831 41 1 11.8180 1.5051 -4.0747 42 1 6.7768 -4.2073 -3.7234 43 1 5.5093 -2.9612 -3.8297 44 1 6.6565 -4.1803 -1.2756 45 1 5.0185 -4.4298 -1.9297 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001204392841.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:16:11 Heat of formation + Delta-G solvation = -71.492010 kcal Electronic energy + Delta-G solvation = -24618.603030 eV Core-core repulsion = 21056.872164 eV Total energy + Delta-G solvation = -3561.730866 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.84107 -39.52614 -37.86476 -35.25157 -35.02589 -33.02717 -31.93217 -30.92850 -30.34437 -29.11911 -26.89972 -24.88079 -23.45816 -23.28105 -21.73551 -20.81369 -20.23419 -19.24956 -17.85140 -17.13081 -16.89392 -16.33601 -15.80630 -15.34519 -15.20082 -14.76896 -14.32885 -14.12772 -13.97479 -13.82475 -13.66672 -13.47220 -13.08900 -12.83724 -12.74611 -12.52483 -12.48519 -12.34999 -12.28969 -11.88034 -11.82766 -11.19595 -11.01246 -10.83094 -10.46799 -10.40930 -10.33505 -10.18888 -10.05024 -9.88011 -9.66062 -9.42926 -8.87580 -8.75216 -6.92540 -5.77535 -3.05731 2.23660 2.41009 2.60571 3.12294 3.43903 3.48347 3.49247 4.12954 4.52112 4.58097 4.73572 4.77848 4.87628 4.94719 4.96749 5.03286 5.06555 5.11582 5.26979 5.31748 5.41179 5.46529 5.53066 5.55868 5.60469 5.72436 5.82211 5.89530 5.90590 6.02360 6.09659 6.14585 6.24559 6.35250 6.42974 6.59299 6.77575 6.89150 7.19711 7.21901 7.69156 7.86750 7.94849 8.41919 9.53006 10.10714 10.45424 11.45389 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.019910 B = 0.003080 C = 0.002860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1406.018208 B = 9088.327713 C = 9786.262161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.512 3.488 3 O -0.544 6.544 4 N -0.716 5.716 5 C 0.121 3.879 6 H 0.114 0.886 7 C -0.159 4.159 8 C 0.515 3.485 9 O -0.547 6.547 10 N -0.600 5.600 11 C 0.099 3.901 12 C -0.127 4.127 13 C -0.094 4.094 14 C 0.158 3.842 15 N -0.732 5.732 16 C -0.240 4.240 17 H 0.069 0.931 18 C -0.014 4.014 19 N -0.934 5.934 20 Si 0.907 3.093 21 H -0.286 1.286 22 H -0.291 1.291 23 H -0.286 1.286 24 C -0.126 4.126 25 C 0.113 3.887 26 H 0.093 0.907 27 H 0.089 0.911 28 H 0.088 0.912 29 H 0.410 0.590 30 H 0.075 0.925 31 H 0.065 0.935 32 H 0.074 0.926 33 H 0.085 0.915 34 H 0.076 0.924 35 H 0.091 0.909 36 H 0.064 0.936 37 H 0.073 0.927 38 H 0.019 0.981 39 H 0.018 0.982 40 H 0.383 0.617 41 H 0.256 0.744 42 H 0.077 0.923 43 H 0.065 0.935 44 H 0.069 0.931 45 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.573 -7.300 11.579 23.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.299 3.701 3 O -0.421 6.421 4 N -0.371 5.371 5 C 0.013 3.987 6 H 0.131 0.869 7 C -0.217 4.217 8 C 0.302 3.698 9 O -0.425 6.425 10 N -0.333 5.333 11 C -0.023 4.023 12 C -0.165 4.165 13 C -0.113 4.113 14 C 0.031 3.969 15 N -0.376 5.376 16 C -0.371 4.371 17 H 0.087 0.913 18 C -0.210 4.210 19 N -0.583 5.583 20 Si 0.738 3.262 21 H -0.213 1.213 22 H -0.217 1.217 23 H -0.213 1.213 24 C -0.165 4.165 25 C -0.009 4.009 26 H 0.112 0.888 27 H 0.108 0.892 28 H 0.107 0.893 29 H 0.247 0.753 30 H 0.094 0.906 31 H 0.084 0.916 32 H 0.093 0.907 33 H 0.104 0.896 34 H 0.095 0.905 35 H 0.110 0.890 36 H 0.083 0.917 37 H 0.091 0.909 38 H 0.036 0.964 39 H 0.036 0.964 40 H 0.217 0.783 41 H 0.065 0.935 42 H 0.095 0.905 43 H 0.084 0.916 44 H 0.087 0.913 45 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -18.450 -7.031 11.396 22.798 hybrid contribution 0.544 0.114 -0.645 0.851 sum -17.907 -6.918 10.752 22.002 Atomic orbital electron populations 1.21903 0.91205 1.05652 1.04441 1.20862 0.90763 0.83157 0.75269 1.90748 1.70769 1.31301 1.49273 1.45883 1.05762 1.09759 1.75721 1.20828 0.82037 0.97104 0.98725 0.86873 1.22122 1.01949 1.03582 0.94070 1.20503 0.81530 0.89721 0.78019 1.90655 1.56150 1.37134 1.58586 1.48118 1.13705 1.16490 1.54940 1.21965 0.93389 0.87779 0.99216 1.21870 1.01432 0.99060 0.94133 1.21311 0.96940 0.94423 0.98621 1.20663 0.90746 0.92761 0.92768 1.42361 1.37616 1.50912 1.06728 1.19184 1.11150 1.19589 0.87166 0.91333 1.24724 0.99417 1.00233 0.96587 1.69642 1.31283 1.36522 1.20866 0.86268 0.79140 0.78448 0.82332 1.21283 1.21678 1.21313 1.21919 0.99139 0.99579 0.95834 1.21671 0.99986 0.86442 0.92802 0.88774 0.89234 0.89288 0.75336 0.90626 0.91632 0.90724 0.89628 0.90539 0.89025 0.91719 0.90860 0.96362 0.96443 0.78266 0.93470 0.90468 0.91591 0.91260 0.89222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.04 10.32 36.00 0.37 -0.67 16 2 C 0.51 5.30 7.90 -10.99 -0.09 5.22 16 3 O -0.54 -7.92 16.75 5.56 0.09 -7.83 16 4 N -0.72 -6.98 5.05 -54.93 -0.28 -7.26 16 5 C 0.12 1.30 2.12 -69.08 -0.15 1.15 16 6 H 0.11 1.33 6.05 -51.93 -0.31 1.02 16 7 C -0.16 -1.45 9.21 37.16 0.34 -1.11 16 8 C 0.52 6.28 6.92 -10.99 -0.08 6.20 16 9 O -0.55 -7.81 15.40 5.56 0.09 -7.73 16 10 N -0.60 -7.03 2.98 -173.03 -0.52 -7.55 16 11 C 0.10 1.12 5.65 -3.93 -0.02 1.09 16 12 C -0.13 -1.81 5.23 -26.83 -0.14 -1.95 16 13 C -0.09 -1.41 2.19 -90.58 -0.20 -1.61 16 14 C 0.16 3.09 5.65 -4.04 -0.02 3.06 16 15 N -0.73 -18.07 5.32 -59.91 -0.32 -18.39 16 16 C -0.24 -6.67 9.99 -15.06 -0.15 -6.82 16 17 H 0.07 1.86 7.83 -52.48 -0.41 1.45 16 18 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 19 N -0.93 -27.91 13.06 55.49 0.72 -27.19 16 20 Si 0.91 22.38 29.55 -169.99 -5.02 17.35 16 21 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 22 H -0.29 -7.22 7.11 56.52 0.40 -6.81 16 23 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 24 C -0.13 -1.56 5.36 -26.61 -0.14 -1.70 16 25 C 0.11 1.30 6.42 -3.71 -0.02 1.27 16 26 H 0.09 0.58 8.12 -51.93 -0.42 0.15 16 27 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.09 0.36 8.14 -51.93 -0.42 -0.07 16 29 H 0.41 3.51 7.76 -40.82 -0.32 3.19 16 30 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.07 0.62 7.15 -51.93 -0.37 0.24 16 33 H 0.09 0.87 5.06 -51.93 -0.26 0.60 16 34 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.09 1.51 7.15 -51.93 -0.37 1.13 16 36 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 38 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 39 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 40 H 0.38 9.80 6.84 -40.82 -0.28 9.52 16 41 H 0.26 7.41 8.31 -40.82 -0.34 7.08 16 42 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 43 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 44 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 45 H 0.09 1.06 7.04 -51.92 -0.37 0.70 16 LS Contribution 360.89 15.07 5.44 5.44 Total: -1.00 -33.75 360.89 -7.51 -41.26 By element: Atomic # 1 Polarization: 15.56 SS G_CDS: -7.32 Total: 8.23 kcal Atomic # 6 Polarization: 4.05 SS G_CDS: -0.39 Total: 3.66 kcal Atomic # 7 Polarization: -60.00 SS G_CDS: -0.39 Total: -60.39 kcal Atomic # 8 Polarization: -15.73 SS G_CDS: 0.18 Total: -15.55 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -5.02 Total: 17.35 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -33.75 -7.51 -41.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001204392841.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.237 kcal (2) G-P(sol) polarization free energy of solvation -33.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds