Wall clock time and date at job start Tue Mar 31 2020 03:16:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 O 1.21280 * 120.00190 * 2 1 4 4 N 1.34776 * 119.99974 * 180.27631 * 2 1 3 5 5 C 1.46505 * 120.00191 * 179.72391 * 4 2 1 6 6 H 1.08998 * 109.47205 * 325.00249 * 5 4 2 7 7 C 1.53003 * 109.46903 * 85.00020 * 5 4 2 8 8 C 1.50695 * 109.47010 * 204.99813 * 5 4 2 9 9 O 1.21274 * 120.00499 * 337.26734 * 8 5 4 10 10 N 1.34779 * 119.99526 * 157.26767 * 8 5 4 11 11 C 1.46927 * 120.63290 * 4.79284 * 10 8 5 12 12 C 1.52758 * 109.00943 * 233.58455 * 11 10 8 13 13 C 1.53041 * 109.38543 * 305.58845 * 12 11 10 14 14 C 1.52998 * 109.44956 * 181.25568 * 13 12 11 15 15 N 1.46502 * 109.47224 * 64.93365 * 14 13 12 16 16 C 1.36938 * 120.00111 * 179.97438 * 15 14 13 17 17 H 1.08003 * 119.99848 * 0.02562 * 16 15 14 18 18 C 1.38808 * 120.00264 * 180.02562 * 16 15 14 19 19 N 1.31621 * 119.99517 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 120.00154 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.47204 * 60.00219 * 20 18 16 22 22 H 1.48503 * 109.47383 * 180.02562 * 20 18 16 23 23 H 1.48499 * 109.47319 * 300.00304 * 20 18 16 24 24 C 1.53038 * 109.53669 * 61.24030 * 13 12 11 25 25 C 1.46925 * 120.63037 * 185.07671 * 10 8 5 26 26 H 1.09004 * 109.46838 * 0.02562 * 1 2 3 27 27 H 1.09003 * 109.47199 * 119.99490 * 1 2 3 28 28 H 1.08997 * 109.47490 * 240.00278 * 1 2 3 29 29 H 0.96994 * 119.99743 * 359.72417 * 4 2 1 30 30 H 1.09003 * 109.47340 * 296.07459 * 7 5 4 31 31 H 1.09002 * 109.46913 * 56.06965 * 7 5 4 32 32 H 1.08996 * 109.47431 * 176.07413 * 7 5 4 33 33 H 1.09003 * 109.58635 * 353.42326 * 11 10 8 34 34 H 1.09005 * 109.58382 * 113.84669 * 11 10 8 35 35 H 1.09006 * 109.56030 * 185.55426 * 12 11 10 36 36 H 1.08999 * 109.35948 * 65.50056 * 12 11 10 37 37 H 1.09002 * 109.45899 * 301.22168 * 13 12 11 38 38 H 1.08997 * 109.47341 * 184.93943 * 14 13 12 39 39 H 1.09002 * 109.46972 * 304.93960 * 14 13 12 40 40 H 0.96998 * 120.00026 * 0.02562 * 15 14 13 41 41 H 0.97008 * 119.99401 * 180.02562 * 19 18 16 42 42 H 1.08997 * 109.49672 * 178.68289 * 24 13 12 43 43 H 1.09007 * 109.49733 * 58.58731 * 24 13 12 44 44 H 1.09002 * 109.58970 * 246.15831 * 25 10 8 45 45 H 1.09007 * 109.58541 * 6.43941 * 25 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1808 -1.1672 -0.0056 5 6 3.6458 -1.1672 -0.0117 6 1 4.0067 -0.3240 -0.6006 7 6 4.1618 -1.0450 1.4235 8 6 4.1456 -2.4535 -0.6173 9 8 3.4344 -3.4357 -0.6270 10 7 5.3830 -2.5121 -1.1483 11 6 6.2945 -1.3639 -1.0513 12 6 6.7910 -1.0032 -2.4501 13 6 7.4070 -2.2414 -3.1055 14 6 7.9330 -1.8743 -4.4945 15 7 9.0332 -0.9159 -4.3624 16 6 9.6653 -0.4408 -5.4805 17 1 9.3525 -0.7724 -6.4596 18 6 10.7080 0.4668 -5.3554 19 7 11.0895 0.8705 -4.1621 20 14 11.5698 1.1154 -6.8805 21 1 10.5861 1.8160 -7.7447 22 1 12.6401 2.0633 -6.4790 23 1 12.1687 -0.0179 -7.6304 24 6 6.3435 -3.3342 -3.2354 25 6 5.8439 -3.7234 -1.8405 26 1 -0.3633 1.0277 -0.0005 27 1 -0.3634 -0.5138 -0.8901 28 1 -0.3634 -0.5138 0.8900 29 1 1.6958 -2.0072 -0.0056 30 1 3.8588 -0.0834 1.8379 31 1 3.7445 -1.8494 2.0293 32 1 5.2495 -1.1150 1.4258 33 1 5.7657 -0.5128 -0.6220 34 1 7.1446 -1.6244 -0.4207 35 1 7.5429 -0.2171 -2.3791 36 1 5.9527 -0.6522 -3.0518 37 1 8.2296 -2.6065 -2.4905 38 1 8.2921 -2.7728 -4.9962 39 1 7.1301 -1.4271 -5.0806 40 1 9.3144 -0.6184 -3.4831 41 1 11.8180 1.5051 -4.0747 42 1 6.7768 -4.2073 -3.7234 43 1 5.5093 -2.9612 -3.8297 44 1 6.6565 -4.1803 -1.2756 45 1 5.0185 -4.4298 -1.9297 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001204392841.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:16:10 Heat of formation + Delta-G solvation = -95.447128 kcal Electronic energy + Delta-G solvation = -24619.641802 eV Core-core repulsion = 21056.872164 eV Total energy + Delta-G solvation = -3562.769638 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.78628 -40.43836 -39.01155 -36.60855 -36.14660 -34.56346 -32.99022 -32.05213 -31.84692 -29.76488 -28.32482 -26.12501 -24.94348 -24.36986 -23.08812 -21.78357 -21.30045 -20.27335 -19.19943 -18.63541 -17.86082 -17.25316 -16.73903 -16.69084 -16.18060 -16.07359 -15.64783 -15.43261 -15.35467 -14.96530 -14.76043 -14.69992 -14.06121 -14.02285 -13.75411 -13.59091 -13.40250 -13.24878 -13.12192 -13.00869 -12.92641 -12.72701 -12.68116 -12.24719 -12.18887 -11.95991 -11.70167 -11.56172 -11.34168 -11.06537 -10.94185 -10.85468 -10.28761 -9.75521 -8.98106 -7.94931 -5.22771 1.31094 1.47276 1.49709 1.55892 1.59080 1.72423 2.31468 2.56261 3.21041 3.38450 3.71563 3.74302 3.85022 3.87626 4.00016 4.02411 4.08850 4.28116 4.33067 4.39516 4.50854 4.56597 4.59345 4.66166 4.68738 4.71454 4.79016 4.84369 4.93598 4.99301 5.06678 5.08123 5.10329 5.15324 5.23614 5.30894 5.46073 5.51742 5.53213 6.22966 6.28056 6.46904 6.90843 7.17035 7.34792 8.11190 8.35225 9.28190 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.019910 B = 0.003080 C = 0.002860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1406.018208 B = 9088.327713 C = 9786.262161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.507 3.493 3 O -0.593 6.593 4 N -0.711 5.711 5 C 0.121 3.879 6 H 0.101 0.899 7 C -0.152 4.152 8 C 0.518 3.482 9 O -0.567 6.567 10 N -0.600 5.600 11 C 0.107 3.893 12 C -0.122 4.122 13 C -0.084 4.084 14 C 0.157 3.843 15 N -0.742 5.742 16 C -0.248 4.248 17 H 0.071 0.929 18 C -0.073 4.073 19 N -0.967 5.967 20 Si 0.971 3.029 21 H -0.280 1.280 22 H -0.294 1.294 23 H -0.278 1.278 24 C -0.116 4.116 25 C 0.116 3.884 26 H 0.092 0.908 27 H 0.107 0.893 28 H 0.114 0.886 29 H 0.417 0.583 30 H 0.069 0.931 31 H 0.071 0.929 32 H 0.084 0.916 33 H 0.098 0.902 34 H 0.092 0.908 35 H 0.066 0.934 36 H 0.054 0.946 37 H 0.074 0.926 38 H 0.020 0.980 39 H 0.012 0.988 40 H 0.376 0.624 41 H 0.252 0.748 42 H 0.090 0.910 43 H 0.059 0.941 44 H 0.085 0.915 45 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.633 -8.414 11.861 24.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.297 3.703 3 O -0.473 6.473 4 N -0.366 5.366 5 C 0.012 3.988 6 H 0.119 0.881 7 C -0.211 4.211 8 C 0.306 3.694 9 O -0.447 6.447 10 N -0.331 5.331 11 C -0.015 4.015 12 C -0.160 4.160 13 C -0.103 4.103 14 C 0.030 3.970 15 N -0.385 5.385 16 C -0.380 4.380 17 H 0.089 0.911 18 C -0.265 4.265 19 N -0.617 5.617 20 Si 0.800 3.200 21 H -0.206 1.206 22 H -0.220 1.220 23 H -0.204 1.204 24 C -0.155 4.155 25 C -0.006 4.006 26 H 0.111 0.889 27 H 0.126 0.874 28 H 0.133 0.867 29 H 0.255 0.745 30 H 0.088 0.912 31 H 0.090 0.910 32 H 0.103 0.897 33 H 0.116 0.884 34 H 0.110 0.890 35 H 0.085 0.915 36 H 0.073 0.927 37 H 0.092 0.908 38 H 0.038 0.962 39 H 0.030 0.970 40 H 0.209 0.791 41 H 0.060 0.940 42 H 0.109 0.891 43 H 0.078 0.922 44 H 0.103 0.897 45 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -19.547 -8.197 11.663 24.193 hybrid contribution 0.826 0.408 -0.768 1.199 sum -18.721 -7.789 10.895 23.018 Atomic orbital electron populations 1.21931 0.87661 1.06289 1.06505 1.21659 0.92435 0.82341 0.73888 1.90727 1.72046 1.32895 1.51658 1.45911 1.05428 1.10116 1.75112 1.20813 0.82821 0.95767 0.99402 0.88110 1.22078 1.02589 1.03481 0.92912 1.20674 0.81292 0.89801 0.77678 1.90646 1.56602 1.37920 1.59489 1.48153 1.13689 1.16563 1.54743 1.21909 0.93969 0.88266 0.97368 1.21750 1.00263 0.98035 0.95944 1.21198 0.97705 0.95558 0.95807 1.20819 0.89091 0.91424 0.95657 1.42544 1.38611 1.51719 1.05666 1.19574 1.11043 1.19171 0.88195 0.91085 1.25513 1.00578 1.01063 0.99366 1.69790 1.31860 1.37325 1.22743 0.85254 0.77880 0.77804 0.79078 1.20621 1.22024 1.20447 1.21829 0.97935 0.98945 0.96752 1.21687 1.00446 0.86310 0.92185 0.88905 0.87421 0.86730 0.74456 0.91161 0.90983 0.89721 0.88412 0.89008 0.91530 0.92714 0.90805 0.96235 0.97050 0.79091 0.93957 0.89105 0.92204 0.89705 0.89173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.65 10.32 71.23 0.74 -0.92 16 2 C 0.51 10.06 7.90 87.65 0.69 10.75 16 3 O -0.59 -17.35 16.75 -3.03 -0.05 -17.40 16 4 N -0.71 -13.03 5.05 -446.10 -2.25 -15.28 16 5 C 0.12 2.47 2.12 44.24 0.09 2.56 16 6 H 0.10 2.35 6.05 -2.39 -0.01 2.33 16 7 C -0.15 -2.58 9.21 71.98 0.66 -1.91 16 8 C 0.52 11.83 6.92 87.66 0.61 12.43 16 9 O -0.57 -15.23 15.40 -3.01 -0.05 -15.27 16 10 N -0.60 -13.04 2.98 -819.73 -2.44 -15.48 16 11 C 0.11 2.28 5.65 86.22 0.49 2.77 16 12 C -0.12 -3.44 5.23 30.53 0.16 -3.29 16 13 C -0.08 -2.45 2.19 -10.77 -0.02 -2.47 16 14 C 0.16 6.09 5.65 86.38 0.49 6.58 16 15 N -0.74 -37.04 5.32 -343.45 -1.83 -38.87 16 16 C -0.25 -13.86 9.99 84.03 0.84 -13.02 16 17 H 0.07 3.85 7.83 -2.91 -0.02 3.82 16 18 C -0.07 -4.16 5.50 84.86 0.47 -3.70 16 19 N -0.97 -58.48 13.06 21.65 0.28 -58.20 16 20 Si 0.97 46.10 29.55 68.60 2.03 48.13 16 21 H -0.28 -12.89 7.11 99.48 0.71 -12.19 16 22 H -0.29 -14.01 7.11 99.48 0.71 -13.30 16 23 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 24 C -0.12 -2.68 5.36 30.67 0.16 -2.52 16 25 C 0.12 2.40 6.42 86.36 0.55 2.96 16 26 H 0.09 1.00 8.12 -2.39 -0.02 0.98 16 27 H 0.11 0.72 8.14 -2.39 -0.02 0.70 16 28 H 0.11 0.58 8.14 -2.39 -0.02 0.56 16 29 H 0.42 6.45 7.76 -92.71 -0.72 5.73 16 30 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 32 H 0.08 1.25 7.15 -2.39 -0.02 1.23 16 33 H 0.10 1.88 5.06 -2.39 -0.01 1.87 16 34 H 0.09 1.74 8.14 -2.38 -0.02 1.72 16 35 H 0.07 2.24 7.15 -2.38 -0.02 2.23 16 36 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 37 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 38 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 39 H 0.01 0.46 8.14 -2.39 -0.02 0.45 16 40 H 0.38 19.62 6.84 -92.71 -0.63 18.98 16 41 H 0.25 14.80 8.31 -92.70 -0.77 14.03 16 42 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 43 H 0.06 1.47 8.14 -2.38 -0.02 1.45 16 44 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 45 H 0.09 1.94 7.04 -2.38 -0.02 1.92 16 Total: -1.00 -72.63 360.89 1.26 -71.37 By element: Atomic # 1 Polarization: 31.14 SS G_CDS: -0.36 Total: 30.78 kcal Atomic # 6 Polarization: 4.31 SS G_CDS: 5.93 Total: 10.23 kcal Atomic # 7 Polarization: -121.60 SS G_CDS: -6.24 Total: -127.84 kcal Atomic # 8 Polarization: -32.58 SS G_CDS: -0.10 Total: -32.68 kcal Atomic # 14 Polarization: 46.10 SS G_CDS: 2.03 Total: 48.13 kcal Total: -72.63 1.26 -71.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001204392841.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.081 kcal (2) G-P(sol) polarization free energy of solvation -72.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds