Wall clock time and date at job start Tue Mar 31 2020 03:16:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 O 1.21283 * 119.99810 * 2 1 4 4 N 1.34778 * 120.00191 * 180.02562 * 2 1 3 5 5 C 1.46492 * 119.99903 * 179.97438 * 4 2 1 6 6 H 1.08996 * 109.47832 * 35.00033 * 5 4 2 7 7 C 1.52998 * 109.47182 * 274.99346 * 5 4 2 8 8 C 1.50703 * 109.46999 * 154.99736 * 5 4 2 9 9 O 1.21288 * 119.99752 * 22.92462 * 8 5 4 10 10 N 1.34780 * 120.00334 * 202.91921 * 8 5 4 11 11 C 1.46925 * 120.63076 * 174.83526 * 10 8 5 12 12 C 1.53185 * 108.77328 * 233.59048 * 11 10 8 13 13 C 1.53037 * 109.31515 * 305.36397 * 12 11 10 14 14 C 1.52998 * 109.46302 * 181.38825 * 13 12 11 15 15 N 1.46497 * 109.47138 * 64.93508 * 14 13 12 16 16 C 1.36939 * 120.00160 * 180.02562 * 15 14 13 17 17 H 1.08007 * 119.99794 * 359.97438 * 16 15 14 18 18 C 1.38814 * 120.00218 * 179.97438 * 16 15 14 19 19 N 1.31621 * 119.99850 * 180.02562 * 18 16 15 20 20 Si 1.86797 * 119.99946 * 0.02562 * 18 16 15 21 21 H 1.48498 * 109.47244 * 89.99145 * 20 18 16 22 22 H 1.48490 * 109.47346 * 209.99625 * 20 18 16 23 23 H 1.48501 * 109.46984 * 329.99810 * 20 18 16 24 24 C 1.53048 * 109.53539 * 61.36839 * 13 12 11 25 25 C 1.46921 * 120.62716 * 354.82139 * 10 8 5 26 26 H 1.08994 * 109.46889 * 269.99577 * 1 2 3 27 27 H 1.09001 * 109.47028 * 29.99596 * 1 2 3 28 28 H 1.09005 * 109.47100 * 149.99604 * 1 2 3 29 29 H 0.97002 * 119.99526 * 359.97438 * 4 2 1 30 30 H 1.09002 * 109.47373 * 301.20758 * 7 5 4 31 31 H 1.09000 * 109.46802 * 61.20483 * 7 5 4 32 32 H 1.08997 * 109.47187 * 181.20440 * 7 5 4 33 33 H 1.08998 * 109.58451 * 353.37812 * 11 10 8 34 34 H 1.09003 * 109.58298 * 113.80582 * 11 10 8 35 35 H 1.08999 * 109.50468 * 65.32170 * 12 11 10 36 36 H 1.09004 * 109.49637 * 185.41733 * 12 11 10 37 37 H 1.08996 * 109.46291 * 301.35192 * 13 12 11 38 38 H 1.08998 * 109.47582 * 184.93656 * 14 13 12 39 39 H 1.09004 * 109.47199 * 304.93149 * 14 13 12 40 40 H 0.96995 * 120.00149 * 359.97438 * 15 14 13 41 41 H 0.97006 * 119.99462 * 180.02562 * 19 18 16 42 42 H 1.09006 * 109.49699 * 178.68020 * 24 13 12 43 43 H 1.08997 * 109.52085 * 58.60286 * 24 13 12 44 44 H 1.09002 * 109.58835 * 246.19894 * 25 10 8 45 45 H 1.09007 * 109.58914 * 6.47745 * 25 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1810 -1.1672 -0.0005 5 6 3.6459 -1.1671 -0.0011 6 1 4.0095 -0.3255 0.5884 7 6 4.1553 -1.0412 -1.4383 8 6 4.1485 -2.4549 0.5990 9 8 3.4386 -3.4383 0.6061 10 7 5.3869 -2.5140 1.1275 11 6 5.8499 -3.7265 1.8162 12 6 6.3527 -3.3400 3.2106 13 6 7.4155 -2.2466 3.0803 14 6 7.9450 -1.8823 4.4687 15 7 8.6418 -3.0356 5.0437 16 6 9.2030 -2.9452 6.2895 17 1 9.1321 -2.0236 6.8481 18 6 9.8628 -4.0382 6.8345 19 7 10.4017 -3.9514 8.0323 20 14 9.9859 -5.6320 5.8681 21 1 11.2185 -5.6149 5.0401 22 1 10.0379 -6.7791 6.8097 23 1 8.7991 -5.7690 4.9861 24 6 6.7975 -1.0071 2.4290 25 6 6.2997 -1.3672 1.0258 26 1 -0.3633 -0.0001 1.0276 27 1 -0.3633 0.8900 -0.5138 28 1 -0.3633 -0.8900 -0.5139 29 1 1.6959 -2.0072 -0.0005 30 1 3.7743 -1.8714 -2.0329 31 1 3.8095 -0.0998 -1.8651 32 1 5.2451 -1.0627 -1.4406 33 1 5.0243 -4.4323 1.9081 34 1 6.6613 -4.1819 1.2484 35 1 5.5199 -2.9685 3.8077 36 1 6.7875 -4.2139 3.6957 37 1 8.2367 -2.6100 2.4626 38 1 8.6370 -1.0442 4.3855 39 1 7.1118 -1.6027 5.1135 40 1 8.7051 -3.8634 4.5422 41 1 10.8631 -4.7151 8.4129 42 1 7.5489 -0.2206 2.3579 43 1 5.9606 -0.6572 3.0333 44 1 7.1477 -1.6301 0.3935 45 1 5.7716 -0.5171 0.5937 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001204392844.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:16:13 Heat of formation + Delta-G solvation = -67.065908 kcal Electronic energy + Delta-G solvation = -24628.990663 eV Core-core repulsion = 21067.451728 eV Total energy + Delta-G solvation = -3561.538936 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.93191 -39.61856 -37.98118 -35.34681 -35.22662 -33.02809 -32.04140 -31.09609 -30.72630 -29.19086 -27.20083 -24.99910 -23.73373 -23.00928 -21.62788 -20.94605 -20.34590 -19.36838 -18.03045 -17.49614 -17.05177 -16.42259 -15.89851 -15.45333 -15.27125 -14.73760 -14.54954 -14.23238 -14.09478 -14.00752 -13.65840 -13.52667 -13.20170 -12.96418 -12.87088 -12.65658 -12.59952 -12.41183 -12.30285 -12.06185 -11.92491 -11.48001 -11.27742 -10.92519 -10.59427 -10.51873 -10.33204 -10.28121 -10.12195 -9.99562 -9.59883 -9.51888 -8.91752 -8.84564 -7.24465 -5.78236 -3.13713 2.15649 2.32017 2.51382 3.03386 3.34625 3.37102 3.43517 4.01934 4.43237 4.56960 4.57363 4.66681 4.73922 4.79328 4.84622 4.87466 5.03097 5.04323 5.15929 5.18941 5.27082 5.34325 5.41480 5.46848 5.52321 5.59977 5.70504 5.71078 5.76196 5.88568 5.94373 5.98675 6.08420 6.15847 6.32458 6.45553 6.64909 6.76200 7.10427 7.13211 7.78850 7.85546 7.98196 8.40862 9.19925 9.92167 10.11948 11.40311 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.028241 B = 0.002974 C = 0.002900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 991.222210 B = 9411.911801 C = 9651.878703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.514 3.486 3 O -0.547 6.547 4 N -0.716 5.716 5 C 0.122 3.878 6 H 0.112 0.888 7 C -0.158 4.158 8 C 0.514 3.486 9 O -0.543 6.543 10 N -0.601 5.601 11 C 0.111 3.889 12 C -0.127 4.127 13 C -0.098 4.098 14 C 0.163 3.837 15 N -0.755 5.755 16 C -0.244 4.244 17 H 0.089 0.911 18 C 0.003 3.997 19 N -0.935 5.935 20 Si 0.885 3.115 21 H -0.284 1.284 22 H -0.291 1.291 23 H -0.277 1.277 24 C -0.128 4.128 25 C 0.101 3.899 26 H 0.095 0.905 27 H 0.094 0.906 28 H 0.081 0.919 29 H 0.411 0.589 30 H 0.065 0.935 31 H 0.075 0.925 32 H 0.073 0.927 33 H 0.091 0.909 34 H 0.069 0.931 35 H 0.067 0.933 36 H 0.083 0.917 37 H 0.073 0.927 38 H 0.028 0.972 39 H 0.026 0.974 40 H 0.360 0.640 41 H 0.259 0.741 42 H 0.081 0.919 43 H 0.069 0.931 44 H 0.076 0.924 45 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.857 5.917 -21.250 27.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.301 3.699 3 O -0.424 6.424 4 N -0.371 5.371 5 C 0.014 3.986 6 H 0.130 0.870 7 C -0.217 4.217 8 C 0.301 3.699 9 O -0.420 6.420 10 N -0.334 5.334 11 C -0.011 4.011 12 C -0.165 4.165 13 C -0.117 4.117 14 C 0.036 3.964 15 N -0.401 5.401 16 C -0.374 4.374 17 H 0.107 0.893 18 C -0.193 4.193 19 N -0.583 5.583 20 Si 0.716 3.284 21 H -0.211 1.211 22 H -0.217 1.217 23 H -0.204 1.204 24 C -0.166 4.166 25 C -0.022 4.022 26 H 0.114 0.886 27 H 0.113 0.887 28 H 0.100 0.900 29 H 0.248 0.752 30 H 0.084 0.916 31 H 0.094 0.906 32 H 0.092 0.908 33 H 0.109 0.891 34 H 0.087 0.913 35 H 0.086 0.914 36 H 0.101 0.899 37 H 0.091 0.909 38 H 0.046 0.954 39 H 0.044 0.956 40 H 0.193 0.807 41 H 0.069 0.931 42 H 0.099 0.901 43 H 0.088 0.912 44 H 0.094 0.906 45 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -16.724 6.234 -21.009 27.566 hybrid contribution 0.093 -1.628 -0.431 1.687 sum -16.631 4.606 -21.439 27.522 Atomic orbital electron populations 1.21873 0.91145 1.04992 1.05080 1.20870 0.90784 0.83113 0.75115 1.90732 1.70749 1.31316 1.49633 1.45935 1.05747 1.09836 1.75533 1.20816 0.82174 0.96994 0.98656 0.86991 1.22120 1.01869 1.03589 0.94123 1.20522 0.81578 0.89796 0.78034 1.90680 1.56162 1.37075 1.58094 1.48100 1.13528 1.16460 1.55294 1.21749 1.00085 0.86269 0.93009 1.21957 0.98997 1.00179 0.95357 1.21369 0.97360 0.94762 0.98239 1.20642 0.94630 0.90755 0.90422 1.42722 1.67296 1.11185 1.18926 1.19065 1.27120 0.99627 0.91550 0.89275 1.24684 1.00331 0.97753 0.96488 1.69707 1.41668 1.30843 1.16042 0.86541 0.77762 0.84692 0.79453 1.21098 1.21734 1.20361 1.21917 1.01285 0.98484 0.94949 1.21966 0.93552 0.88167 0.98514 0.88601 0.88692 0.90015 0.75224 0.91574 0.90643 0.90818 0.89081 0.91281 0.91414 0.89874 0.90910 0.95419 0.95614 0.80691 0.93058 0.90067 0.91208 0.90622 0.89545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.91 10.30 36.01 0.37 -0.54 16 2 C 0.51 4.80 7.90 -10.98 -0.09 4.72 16 3 O -0.55 -7.21 16.76 5.56 0.09 -7.12 16 4 N -0.72 -6.37 5.05 -54.94 -0.28 -6.64 16 5 C 0.12 1.16 2.11 -69.09 -0.15 1.01 16 6 H 0.11 1.11 6.06 -51.93 -0.31 0.80 16 7 C -0.16 -1.23 9.23 37.16 0.34 -0.89 16 8 C 0.51 5.90 6.92 -10.98 -0.08 5.82 16 9 O -0.54 -7.66 15.40 5.55 0.09 -7.58 16 10 N -0.60 -6.54 2.97 -172.77 -0.51 -7.06 16 11 C 0.11 1.34 6.42 -3.71 -0.02 1.31 16 12 C -0.13 -1.76 5.25 -26.62 -0.14 -1.90 16 13 C -0.10 -1.36 2.19 -90.58 -0.20 -1.56 16 14 C 0.16 3.00 5.65 -4.04 -0.02 2.98 16 15 N -0.76 -17.55 5.12 -59.91 -0.31 -17.85 16 16 C -0.24 -6.88 10.47 -15.06 -0.16 -7.04 16 17 H 0.09 2.70 8.06 -52.48 -0.42 2.28 16 18 C 0.00 0.09 5.50 -17.43 -0.10 0.00 16 19 N -0.93 -29.42 13.97 55.49 0.78 -28.64 16 20 Si 0.89 21.93 27.74 -169.99 -4.71 17.22 16 21 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 22 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 23 H -0.28 -6.37 6.52 56.52 0.37 -6.00 16 24 C -0.13 -1.36 5.36 -26.61 -0.14 -1.50 16 25 C 0.10 0.89 5.71 -3.72 -0.02 0.87 16 26 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 29 H 0.41 3.29 7.76 -40.82 -0.32 2.97 16 30 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.07 0.48 7.10 -51.93 -0.37 0.11 16 33 H 0.09 1.18 7.04 -51.93 -0.37 0.82 16 34 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.08 1.31 7.15 -51.93 -0.37 0.94 16 37 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 38 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.36 8.09 4.70 -40.82 -0.19 7.90 16 41 H 0.26 7.76 8.31 -40.82 -0.34 7.42 16 42 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 43 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 44 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 45 H 0.09 0.63 5.02 -51.93 -0.26 0.37 16 LS Contribution 357.80 15.07 5.39 5.39 Total: -1.00 -35.04 357.80 -7.14 -42.18 By element: Atomic # 1 Polarization: 14.10 SS G_CDS: -7.28 Total: 6.82 kcal Atomic # 6 Polarization: 3.67 SS G_CDS: -0.40 Total: 3.28 kcal Atomic # 7 Polarization: -59.87 SS G_CDS: -0.32 Total: -60.19 kcal Atomic # 8 Polarization: -14.87 SS G_CDS: 0.18 Total: -14.69 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -4.71 Total: 17.22 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -35.04 -7.14 -42.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001204392844.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.890 kcal (2) G-P(sol) polarization free energy of solvation -35.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds