Wall clock time and date at job start Tue Mar 31 2020 03:16:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 O 1.21283 * 119.99810 * 2 1 4 4 N 1.34778 * 120.00191 * 180.02562 * 2 1 3 5 5 C 1.46492 * 119.99903 * 179.97438 * 4 2 1 6 6 H 1.08996 * 109.47832 * 35.00033 * 5 4 2 7 7 C 1.52998 * 109.47182 * 274.99346 * 5 4 2 8 8 C 1.50703 * 109.46999 * 154.99736 * 5 4 2 9 9 O 1.21288 * 119.99752 * 22.92462 * 8 5 4 10 10 N 1.34780 * 120.00334 * 202.91921 * 8 5 4 11 11 C 1.46925 * 120.63076 * 174.83526 * 10 8 5 12 12 C 1.53185 * 108.77328 * 233.59048 * 11 10 8 13 13 C 1.53037 * 109.31515 * 305.36397 * 12 11 10 14 14 C 1.52998 * 109.46302 * 181.38825 * 13 12 11 15 15 N 1.46497 * 109.47138 * 64.93508 * 14 13 12 16 16 C 1.36939 * 120.00160 * 180.02562 * 15 14 13 17 17 H 1.08007 * 119.99794 * 359.97438 * 16 15 14 18 18 C 1.38814 * 120.00218 * 179.97438 * 16 15 14 19 19 N 1.31621 * 119.99850 * 180.02562 * 18 16 15 20 20 Si 1.86797 * 119.99946 * 0.02562 * 18 16 15 21 21 H 1.48498 * 109.47244 * 89.99145 * 20 18 16 22 22 H 1.48490 * 109.47346 * 209.99625 * 20 18 16 23 23 H 1.48501 * 109.46984 * 329.99810 * 20 18 16 24 24 C 1.53048 * 109.53539 * 61.36839 * 13 12 11 25 25 C 1.46921 * 120.62716 * 354.82139 * 10 8 5 26 26 H 1.08994 * 109.46889 * 269.99577 * 1 2 3 27 27 H 1.09001 * 109.47028 * 29.99596 * 1 2 3 28 28 H 1.09005 * 109.47100 * 149.99604 * 1 2 3 29 29 H 0.97002 * 119.99526 * 359.97438 * 4 2 1 30 30 H 1.09002 * 109.47373 * 301.20758 * 7 5 4 31 31 H 1.09000 * 109.46802 * 61.20483 * 7 5 4 32 32 H 1.08997 * 109.47187 * 181.20440 * 7 5 4 33 33 H 1.08998 * 109.58451 * 353.37812 * 11 10 8 34 34 H 1.09003 * 109.58298 * 113.80582 * 11 10 8 35 35 H 1.08999 * 109.50468 * 65.32170 * 12 11 10 36 36 H 1.09004 * 109.49637 * 185.41733 * 12 11 10 37 37 H 1.08996 * 109.46291 * 301.35192 * 13 12 11 38 38 H 1.08998 * 109.47582 * 184.93656 * 14 13 12 39 39 H 1.09004 * 109.47199 * 304.93149 * 14 13 12 40 40 H 0.96995 * 120.00149 * 359.97438 * 15 14 13 41 41 H 0.97006 * 119.99462 * 180.02562 * 19 18 16 42 42 H 1.09006 * 109.49699 * 178.68020 * 24 13 12 43 43 H 1.08997 * 109.52085 * 58.60286 * 24 13 12 44 44 H 1.09002 * 109.58835 * 246.19894 * 25 10 8 45 45 H 1.09007 * 109.58914 * 6.47745 * 25 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1810 -1.1672 -0.0005 5 6 3.6459 -1.1671 -0.0011 6 1 4.0095 -0.3255 0.5884 7 6 4.1553 -1.0412 -1.4383 8 6 4.1485 -2.4549 0.5990 9 8 3.4386 -3.4383 0.6061 10 7 5.3869 -2.5140 1.1275 11 6 5.8499 -3.7265 1.8162 12 6 6.3527 -3.3400 3.2106 13 6 7.4155 -2.2466 3.0803 14 6 7.9450 -1.8823 4.4687 15 7 8.6418 -3.0356 5.0437 16 6 9.2030 -2.9452 6.2895 17 1 9.1321 -2.0236 6.8481 18 6 9.8628 -4.0382 6.8345 19 7 10.4017 -3.9514 8.0323 20 14 9.9859 -5.6320 5.8681 21 1 11.2185 -5.6149 5.0401 22 1 10.0379 -6.7791 6.8097 23 1 8.7991 -5.7690 4.9861 24 6 6.7975 -1.0071 2.4290 25 6 6.2997 -1.3672 1.0258 26 1 -0.3633 -0.0001 1.0276 27 1 -0.3633 0.8900 -0.5138 28 1 -0.3633 -0.8900 -0.5139 29 1 1.6959 -2.0072 -0.0005 30 1 3.7743 -1.8714 -2.0329 31 1 3.8095 -0.0998 -1.8651 32 1 5.2451 -1.0627 -1.4406 33 1 5.0243 -4.4323 1.9081 34 1 6.6613 -4.1819 1.2484 35 1 5.5199 -2.9685 3.8077 36 1 6.7875 -4.2139 3.6957 37 1 8.2367 -2.6100 2.4626 38 1 8.6370 -1.0442 4.3855 39 1 7.1118 -1.6027 5.1135 40 1 8.7051 -3.8634 4.5422 41 1 10.8631 -4.7151 8.4129 42 1 7.5489 -0.2206 2.3579 43 1 5.9606 -0.6572 3.0333 44 1 7.1477 -1.6301 0.3935 45 1 5.7716 -0.5171 0.5937 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001204392844.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:16:12 Heat of formation + Delta-G solvation = -92.962448 kcal Electronic energy + Delta-G solvation = -24630.113622 eV Core-core repulsion = 21067.451728 eV Total energy + Delta-G solvation = -3562.661894 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.78200 -40.43522 -39.04759 -36.75873 -36.13351 -34.57271 -33.03212 -32.56435 -31.77861 -29.75491 -28.55999 -26.01791 -25.07439 -24.01536 -23.12779 -21.83760 -21.31658 -20.32201 -19.66859 -18.64815 -17.87120 -17.24428 -16.74925 -16.60149 -16.21884 -16.14412 -15.89943 -15.51853 -15.14173 -14.93026 -14.74499 -14.60227 -14.40101 -14.11238 -13.82811 -13.55623 -13.41189 -13.32985 -13.25434 -13.08566 -12.96644 -12.81282 -12.66045 -12.22472 -12.19563 -11.90776 -11.69242 -11.56507 -11.44944 -11.05861 -10.97486 -10.87438 -10.28184 -9.75597 -9.29901 -8.03841 -5.37258 1.31837 1.36442 1.40946 1.48211 1.58939 1.72173 2.32509 2.47661 3.22431 3.27550 3.54820 3.76184 3.79817 3.86984 3.95170 4.02233 4.06042 4.13408 4.31231 4.38217 4.49549 4.53406 4.61764 4.65569 4.67716 4.70669 4.76981 4.83487 4.91429 4.95005 5.06504 5.07209 5.11200 5.12699 5.22041 5.30329 5.47830 5.48548 5.74737 6.20327 6.25128 6.46104 6.92038 7.07493 7.15703 7.83715 8.03348 9.17945 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.028241 B = 0.002974 C = 0.002900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 991.222210 B = 9411.911801 C = 9651.878703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.510 3.490 3 O -0.590 6.590 4 N -0.713 5.713 5 C 0.123 3.877 6 H 0.109 0.891 7 C -0.152 4.152 8 C 0.514 3.486 9 O -0.572 6.572 10 N -0.601 5.601 11 C 0.118 3.882 12 C -0.122 4.122 13 C -0.088 4.088 14 C 0.158 3.842 15 N -0.756 5.756 16 C -0.236 4.236 17 H 0.053 0.947 18 C -0.067 4.067 19 N -0.986 5.986 20 Si 0.957 3.043 21 H -0.275 1.275 22 H -0.298 1.298 23 H -0.248 1.248 24 C -0.123 4.123 25 C 0.102 3.898 26 H 0.106 0.894 27 H 0.099 0.901 28 H 0.105 0.895 29 H 0.416 0.584 30 H 0.065 0.935 31 H 0.071 0.929 32 H 0.090 0.910 33 H 0.079 0.921 34 H 0.086 0.914 35 H 0.053 0.947 36 H 0.064 0.936 37 H 0.084 0.916 38 H 0.028 0.972 39 H 0.014 0.986 40 H 0.367 0.633 41 H 0.258 0.742 42 H 0.097 0.903 43 H 0.061 0.939 44 H 0.098 0.902 45 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.653 5.533 -24.247 30.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.299 3.701 3 O -0.470 6.470 4 N -0.368 5.368 5 C 0.015 3.985 6 H 0.127 0.873 7 C -0.210 4.210 8 C 0.302 3.698 9 O -0.452 6.452 10 N -0.333 5.333 11 C -0.005 4.005 12 C -0.160 4.160 13 C -0.106 4.106 14 C 0.032 3.968 15 N -0.402 5.402 16 C -0.367 4.367 17 H 0.071 0.929 18 C -0.258 4.258 19 N -0.636 5.636 20 Si 0.784 3.216 21 H -0.201 1.201 22 H -0.224 1.224 23 H -0.173 1.173 24 C -0.161 4.161 25 C -0.020 4.020 26 H 0.125 0.875 27 H 0.117 0.883 28 H 0.123 0.877 29 H 0.254 0.746 30 H 0.085 0.915 31 H 0.090 0.910 32 H 0.108 0.892 33 H 0.098 0.902 34 H 0.104 0.896 35 H 0.072 0.928 36 H 0.083 0.917 37 H 0.102 0.898 38 H 0.046 0.954 39 H 0.032 0.968 40 H 0.201 0.799 41 H 0.067 0.933 42 H 0.116 0.884 43 H 0.079 0.921 44 H 0.117 0.883 45 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -17.549 5.869 -24.054 30.349 hybrid contribution 0.313 -1.406 0.579 1.553 sum -17.236 4.463 -23.476 29.463 Atomic orbital electron populations 1.21910 0.88011 1.06397 1.06158 1.21573 0.92288 0.82359 0.73876 1.90709 1.71892 1.32679 1.51764 1.46003 1.05682 1.10095 1.74991 1.20840 0.82653 0.95507 0.99539 0.87322 1.22084 1.02888 1.03363 0.92678 1.20842 0.81350 0.90006 0.77639 1.90667 1.56937 1.38238 1.59355 1.48164 1.13741 1.16635 1.54721 1.21597 1.00117 0.86655 0.92095 1.21860 0.98428 0.99368 0.96375 1.21276 0.97660 0.96266 0.95439 1.20830 0.93791 0.89284 0.92854 1.42715 1.67213 1.12926 1.17388 1.19045 1.26420 0.98179 0.93044 0.92919 1.25566 1.00595 1.01954 0.97697 1.69901 1.43359 1.32037 1.18347 0.85380 0.79041 0.79059 0.78137 1.20123 1.22448 1.17253 1.21881 1.01279 0.97247 0.95707 1.22133 0.94113 0.88158 0.97556 0.87533 0.88261 0.87667 0.74650 0.91545 0.90956 0.89161 0.90221 0.89625 0.92802 0.91702 0.89815 0.95374 0.96783 0.79936 0.93339 0.88412 0.92053 0.88342 0.87557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.42 10.30 71.24 0.73 -0.69 16 2 C 0.51 8.86 7.90 87.66 0.69 9.55 16 3 O -0.59 -15.10 16.76 -3.04 -0.05 -15.15 16 4 N -0.71 -11.62 5.05 -446.11 -2.25 -13.87 16 5 C 0.12 2.10 2.11 44.25 0.09 2.19 16 6 H 0.11 1.96 6.06 -2.39 -0.01 1.94 16 7 C -0.15 -1.99 9.23 71.98 0.66 -1.33 16 8 C 0.51 10.80 6.92 87.66 0.61 11.41 16 9 O -0.57 -15.40 15.40 -3.05 -0.05 -15.44 16 10 N -0.60 -11.56 2.97 -818.92 -2.43 -14.00 16 11 C 0.12 2.59 6.42 86.36 0.55 3.14 16 12 C -0.12 -3.21 5.25 30.67 0.16 -3.05 16 13 C -0.09 -2.23 2.19 -10.77 -0.02 -2.26 16 14 C 0.16 5.74 5.65 86.38 0.49 6.23 16 15 N -0.76 -34.65 5.12 -343.45 -1.76 -36.41 16 16 C -0.24 -13.54 10.47 84.03 0.88 -12.66 16 17 H 0.05 3.34 8.06 -2.91 -0.02 3.32 16 18 C -0.07 -3.96 5.50 84.86 0.47 -3.49 16 19 N -0.99 -63.73 13.97 21.65 0.30 -63.43 16 20 Si 0.96 45.07 27.74 68.60 1.90 46.97 16 21 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 22 H -0.30 -14.30 7.11 99.48 0.71 -13.59 16 23 H -0.25 -10.36 6.52 99.48 0.65 -9.71 16 24 C -0.12 -2.28 5.36 30.67 0.16 -2.12 16 25 C 0.10 1.45 5.71 86.36 0.49 1.94 16 26 H 0.11 0.73 8.14 -2.39 -0.02 0.71 16 27 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 28 H 0.10 0.41 8.14 -2.38 -0.02 0.39 16 29 H 0.42 6.03 7.76 -92.71 -0.72 5.31 16 30 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.09 0.87 7.10 -2.39 -0.02 0.85 16 33 H 0.08 1.97 7.04 -2.39 -0.02 1.95 16 34 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 35 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 36 H 0.06 1.95 7.15 -2.38 -0.02 1.93 16 37 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 38 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 39 H 0.01 0.55 8.14 -2.38 -0.02 0.53 16 40 H 0.37 15.79 4.70 -92.71 -0.44 15.35 16 41 H 0.26 15.84 8.31 -92.70 -0.77 15.07 16 42 H 0.10 1.55 8.14 -2.38 -0.02 1.53 16 43 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 44 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 45 H 0.11 1.16 5.02 -2.38 -0.01 1.15 16 Total: -1.00 -77.90 357.80 1.42 -76.48 By element: Atomic # 1 Polarization: 26.20 SS G_CDS: -0.22 Total: 25.98 kcal Atomic # 6 Polarization: 2.89 SS G_CDS: 5.98 Total: 8.86 kcal Atomic # 7 Polarization: -121.57 SS G_CDS: -6.14 Total: -127.71 kcal Atomic # 8 Polarization: -30.49 SS G_CDS: -0.10 Total: -30.59 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 1.90 Total: 46.97 kcal Total: -77.90 1.42 -76.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001204392844.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.481 kcal (2) G-P(sol) polarization free energy of solvation -77.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.481 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds